mRNA_H-elongata_contig48.11936.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig48.11936.1 vs. uniprot
Match: A0A6H5JBB0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBB0_9PHAE) HSP 1 Score: 229 bits (584), Expect = 7.980e-60 Identity = 215/624 (34.46%), Postives = 295/624 (47.28%), Query Frame = 3
Query: 45 AVLSPSMFMVYKLRTPLSAAAAAGEFALFKTVDHAVNRCI-EQRPDLSREEHHLSQLDMMDADGLTLAMHAARSGNVSIFEAVLDRIDRAKVSDRLLKKDYAXXXXXXXXXXXXXXXXXXKVANSIQENFTNTELVAHLQESSDDNRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGCREGTAKTGSQMTQRQKKQSXXXXXXXXXXXXXXXXQQS-GVGSNNDLSSSIPSADRRNSAPGRQRIISESDEKTDLNRFQEEKLSESDSGDGGVALASKMSRDDSGDDDDDKYGVDRAMMPSEARGIDDDEEAVKYSASNIGVNTQKNELV------VFRVAWSLVKDTLWKQQVRGQLRARDSWGRNILIHAVLSRRLQVFDAVFYAVNEEIIGYEIEDLMGINKDDNEESIMEITLSGASKDMVRLVTRLDQQLKKTVAIREKASTIEAKIQSFIPGKSIVIFQLLLPEMNEASWALILLIFMSALAPLFSYGSSLVLKEMPSSRNNLRKSISSILMSAPAMWWWGIGTSSIAQD-SFGWSENSSSASLAVATILIPALDQFLSSHRMEKVYDELSCQRRRFARKAQLEWNREQGRLEAEVA 1889
AVL+PSM +++RTPL AAAA G ALF TV HAVNR I EQR + +R QL+ MD G+TL M AARSGNV I EAV++R+ A + XXXXXXXXXXXXX + N +Q + + L S+DD A+ G QM + S GV L +I + AP G G ++E V V + A +LV ++VR QL+A DSWGR I HAVL+RR +VFDAVF+A E I+ EI LMGINK+D +++ME L + M V R DQ+LK+ + + E+ASTIE+KIQSFIPGK IVIFQLLLPE+ + L LLI MSA+AP S+ + LV +E P S R+S+ S+ +SAPAM++WG+GTS++ GW++++++A+LAVATI+IPA+D F +S ++E+ YD+ SCQR RF+++A +W ++ G++ A
Sbjct: 98 AVLAPSMSFEHRMRTPLMAAAATGSLALFATVLHAVNRAIGEQRMETNRISLRKKQLEYMDESGMTLLMLAARSGNVGILEAVVERVRIAP--EXXXXXXXXXXXXXXXXXXXXXSAVFTVILNELQRCYKDNVEEQLLASSADDRTILMH----------------------------------------------------AARCGDQMGVLSVSHACQRFIMPSRLRKLVKQVDSEGV---TFLMHAISATSFHTGAPTATXXXXXXXXXXXXXXXXXXXX---------------------------XAGEXXXXXXXXXXXXXXXXXXXXXXXXXXGEGAPRDEWVLDPGMAVLKSALALV------EEVREQLKATDSWGRTIFGHAVLTRRPKVFDAVFFAAREHILDDEIAALMGINKEDKSDTVMETALQTVPRAMAARVARRDQELKRAITLEERASTIESKIQSFIPGKLIVIFQLLLPEVGSSD-KLTLLIIMSAIAPGLSWAAGLVAREKPGSTEK-RRSLVSLFLSAPAMFFWGLGTSTVGMTHGMGWNDSATAAALAVATIIIPAMDAFFNSRKVEQWYDKWSCQRWRFSQRAHAKWVKKHGKVSPAAA 629
BLAST of mRNA_H-elongata_contig48.11936.1 vs. uniprot
Match: D7FN08_ECTSI (Kinase, NEK n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN08_ECTSI) HSP 1 Score: 160 bits (405), Expect = 1.680e-37 Identity = 101/251 (40.24%), Postives = 154/251 (61.35%), Query Frame = 3
Query: 1062 GVNTQKNELV-VFRVAWSLVKDTLWKQQVRGQLRARDSWGRNILIHAVLSRRLQVFDAVFYAVNEEIIGYEIEDLMGINKDDNEESIMEITLSGASKDMVRLVTRLDQQLKKTVAIREKASTIEAKIQSFIPGKSIVIFQLLLPEMNEASWALILLIFMSALAPLFSYGSSLVLKEMPSSRNNL--RKSISSILMSAPAMWWWGIGTSSIAQDSFGWSENSSSASLAVATILIPALDQFLSSHRMEKVYDE 1805
GVN + +V VF+VA LV LW +V QL+A D WGR++L HA+LS +F+A + AV + + + ++M N+ + E++ M L+ + DM +L QLKK V R K ST++AKI+ FIPGK +V+FQLLLP++ E LILL M ALAPL ++ + + S + R + S+L+ APAM++WG+GTS++ Q + GWS + S+ S+A AT+ IPA+D F +S + + D+
Sbjct: 326 GVNKRDAVVVPVFKVAVRLVTRCLWTDEVLQQLKAVDLWGRSVLTHALLSGHEMMFEAAYGAVRDVLQDELVSEMMETNEGEREDTPMIDALARGNTDMRKLYALRAGQLKKDVDARSKLSTMDAKIEGFIPGKLVVMFQLLLPQIAEGR-QLILLYIMCALAPLVKLATTGSVDDSDSKHTGVKARSNKLSVLLGAPAMFFWGVGTSTVGQTALGWSSSLSATSMAAATLAIPAVDSFFNSRKASAIGDK 575
BLAST of mRNA_H-elongata_contig48.11936.1 vs. uniprot
Match: D7FWX2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWX2_ECTSI) HSP 1 Score: 150 bits (379), Expect = 7.400e-35 Identity = 94/233 (40.34%), Postives = 140/233 (60.09%), Query Frame = 3
Query: 1086 LVVFRVAWSLVKDTLWKQQVRGQLRARDSWGRNILIHAVLSRRLQVFDAVFYAVNEEIIGYEIEDLM--GINKDDNEESIMEITLSGASKDMVRLVTRLDQQLKKTVAIREKASTIEAKIQSFIPGKSIVIFQLLLPEMNEAS-WALILLIFMSALAPLFSYGSSLVLKEMPSSRNNLRKSISSILMSAPAMWWWGIGTSSIAQDSFGWSENSSSASLAVATILIPALDQFLS 1775
L V + A + LW + R L ARD W R+I+ HA++S R Q+F+AVF A ++ +I+ L+ G+ + S+ S M +LV LK V R+ ST+ AKIQ+FIPG IVIFQLLLPE +E+ L LL+ + +AP +S+G+++ +K P + N ++PAM++WG+GTS IA +SF W+E++S+A+LAVATI+IPALD + S
Sbjct: 135 LPVIQAALEFARANLWMPEYRKLLEARDGWHRSIIEHAIMSGRTQIFEAVFNAFRRDVHDEKIDLLLDPGVETSHAQTSLRRAMNSQEGTPMAQLVREKTTSLKSDVTKRKDDSTVAAKIQAFIPGNLIVIFQLLLPEFDESGDGPLYLLLVLCFIAPFWSWGAAMSVKRDPETTNT---------RASPAMFFWGVGTSKIAPNSFNWAESASAAALAVATIVIPALDTYFS 358
BLAST of mRNA_H-elongata_contig48.11936.1 vs. uniprot
Match: A0A6H5KM21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM21_9PHAE) HSP 1 Score: 152 bits (383), Expect = 1.370e-34 Identity = 94/234 (40.17%), Postives = 142/234 (60.68%), Query Frame = 3
Query: 1086 LVVFRVAWSLVKDTLWKQQVRGQLRARDSWGRNILIHAVLSRRLQVFDAVFYAVNEEIIGYEIEDLM--GINKDDNEESIMEITLSGASKDMVRLVTRLDQQLKKTVAIREKASTIEAKIQSFIPGKSIVIFQLLLPEMNEAS-WALILLIFMSALAPLFSYGSSLVLKEMPSSRNN-LRKSISSILMSAPAMWWWGIGTSSIAQDSFGWSENSSSASLAVATILIPALDQFLS 1775
L V + + LW + R L ARD W R+I+ HA++S R Q+F+ +F A +I +I+ L+ G+ + S+ T S M +LV LK V+ R+ ST+ AKIQ+FIPG IVIFQLLLPE +E+ L LL+ + +AP +S+G ++ +K P N R++ + ++ PAM++WG+GTS IA +SF W+E++S+A+LAVATI+IPALD + S
Sbjct: 253 LPVIQAVLEFARANLWMPEYRKLLEARDGWHRSIIEHAIMSGRTQIFETIFNAFRRDIHDEKIDLLLDPGVETSHAQTSLRRATNSQEGTPMAQLVQEKTTSLKSDVSKRKDDSTVAAKIQAFIPGNLIVIFQLLLPEFDESGDGPLYLLLVLCFIAPFWSWGVAMSVKRDPEITNTRARQTAAKYFLAIPAMFFWGVGTSKIAPNSFNWAESASAAALAVATIVIPALDTYFS 486
BLAST of mRNA_H-elongata_contig48.11936.1 vs. uniprot
Match: D7FST7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FST7_ECTSI) HSP 1 Score: 125 bits (313), Expect = 1.480e-26 Identity = 69/128 (53.91%), Postives = 88/128 (68.75%), Query Frame = 3
Query: 1086 LVVFRVAWSLVKDTLWKQQVRGQLRARDSWGRNILIHAVLSRRLQVFDAVFYAVNEEIIGYEIEDLMGINKDDNEESIMEITLSGASKDMVRLVTRLDQQLKKTVAIREKASTIEAKIQSFIPGKSIV 1469
+ V + AW+LVK+ VR QL+A DSWGR I HAVL+RR +VFDAVF+A E I+ EI LMGINK+D ++IME L + M V R DQ+LK+ + + E+ASTIE+KIQSFIPGK IV
Sbjct: 325 MAVLKSAWALVKE------VREQLKATDSWGRTIFGHAVLTRRPKVFDAVFFAAREYILDDEIAALMGINKEDKSDTIMETALQTVPRAMAARVARRDQELKRAITLEERASTIESKIQSFIPGKLIV 446 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48.11936.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig48.11936.1 >prot_H-elongata_contig48.11936.1 ID=prot_H-elongata_contig48.11936.1|Name=mRNA_H-elongata_contig48.11936.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=648bp MFMVYKLRTPLSAAAAAGEFALFKTVDHAVNRCIEQRPDLSREEHHLSQLback to top mRNA from alignment at H-elongata_contig48:11202..21195+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig48.11936.1 ID=mRNA_H-elongata_contig48.11936.1|Name=mRNA_H-elongata_contig48.11936.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=9994bp|location=Sequence derived from alignment at H-elongata_contig48:11202..21195+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig48:11202..21195+ >mRNA_H-elongata_contig48.11936.1 ID=mRNA_H-elongata_contig48.11936.1|Name=mRNA_H-elongata_contig48.11936.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3888bp|location=Sequence derived from alignment at H-elongata_contig48:11202..21195+ (Himanthalia elongata Himel1 dioecious)back to top |