mRNA_H-elongata_contig47985.11933.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig47985.11933.1 vs. uniprot
Match: UPI001ABC6C57 (uncharacterized protein LOC109780584 n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=UPI001ABC6C57) HSP 1 Score: 56.2 bits (134), Expect = 3.690e-7 Identity = 33/85 (38.82%), Postives = 45/85 (52.94%), Query Frame = 1
Query: 22 QLITLGVRDNNNNILLVASAIVDKEDEASYTYFLRNCMKSAAFASTFNSADMTIFIDVHKGSPPALKKCLPNAETYRCLQHYLKN 276
Q++ RD NNNI +A AIVDKED AS+++FL +K A + + TI D KG A+ PN CL+H +N
Sbjct: 93 QILAATGRDGNNNIFPIAFAIVDKEDTASWSWFLTQ-LKYALGGESGKYGNYTIISDRQKGLLKAINNVFPNCPQRFCLRHIYQN 176
BLAST of mRNA_H-elongata_contig47985.11933.1 vs. uniprot
Match: UPI00188F24EB (uncharacterized protein LOC119299508 n=1 Tax=Triticum dicoccoides TaxID=85692 RepID=UPI00188F24EB) HSP 1 Score: 55.8 bits (133), Expect = 4.680e-7 Identity = 33/85 (38.82%), Postives = 46/85 (54.12%), Query Frame = 1
Query: 22 QLITLGVRDNNNNILLVASAIVDKEDEASYTYFLRNCMKSAAFASTFNSADMTIFIDVHKGSPPALKKCLPNAETYRCLQHYLKN 276
Q++ RD+NNNI +A AIVDKED AS+++FL +K A + N + TI D K A+ PN CL+H +N
Sbjct: 148 QILAATGRDSNNNIFPIAFAIVDKEDTASWSWFLTQ-LKYALGGESGNYGNYTIISDRQKCLLKAINNVFPNCPQRYCLRHIYQN 231
BLAST of mRNA_H-elongata_contig47985.11933.1 vs. uniprot
Match: UPI001E1CA521 (uncharacterized protein LOC123494533 n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=UPI001E1CA521) HSP 1 Score: 55.8 bits (133), Expect = 5.190e-7 Identity = 33/85 (38.82%), Postives = 45/85 (52.94%), Query Frame = 1
Query: 22 QLITLGVRDNNNNILLVASAIVDKEDEASYTYFLRNCMKSAAFASTFNSADMTIFIDVHKGSPPALKKCLPNAETYRCLQHYLKN 276
Q++ RD NNNI +A AIVDKED AS+++FL +K A + + TI D KG A+ PN CL+H +N
Sbjct: 601 QILAATGRDGNNNIFPIAFAIVDKEDTASWSWFLTQ-LKYALGGESGKYGNYTIISDRQKGVLKAVNNVFPNCPQRFCLRHIYQN 684
BLAST of mRNA_H-elongata_contig47985.11933.1 vs. uniprot
Match: A0A6L2NWE1_TANCI (Multidrug resistance-associated protein 5 n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2NWE1_TANCI) HSP 1 Score: 54.3 bits (129), Expect = 1.800e-6 Identity = 33/84 (39.29%), Postives = 50/84 (59.52%), Query Frame = 1
Query: 25 LITLGVRDNNNNILLVASAIVDKEDEASYTYFLRNCMKSAAFASTFNSADMTIFIDVHKGSPPALKKCLPNAETYRCLQHYLKN 276
L T+G RD NNNI LVA A+V+ E++ ++T+FL ++ S N +T+ D HKG A+K +PN E +C +H +N
Sbjct: 495 LTTIG-RDGNNNIYLVAWAVVNVENKDNWTWFLE-LLEEDLGCSRGNG--LTLMFDQHKGLIEAVKDVMPNVEHRQCARHIYEN 574
BLAST of mRNA_H-elongata_contig47985.11933.1 vs. uniprot
Match: UPI001FB0F2F0 (uncharacterized protein LOC124899435 n=1 Tax=Capsicum annuum TaxID=4072 RepID=UPI001FB0F2F0) HSP 1 Score: 53.5 bits (127), Expect = 3.110e-6 Identity = 31/86 (36.05%), Postives = 49/86 (56.98%), Query Frame = 1
Query: 19 GQLITLGVRDNNNNILLVASAIVDKEDEASYTYFLRNCMKSAAFASTFNSADMTIFIDVHKGSPPALKKCLPNAETYRCLQHYLKN 276
G+L+ ++ NN + +A A+VDKE E S+++F+ N +K T A +T+ D+ KG A+ + LPNAE RC +H N
Sbjct: 77 GELLVAVGKNGNNQMFPIAWAVVDKETEHSWSFFV-NYLKENLQLGT--GAGLTVMADMQKGFHVAVLELLPNAEIRRCARHIWAN 159
BLAST of mRNA_H-elongata_contig47985.11933.1 vs. uniprot
Match: UPI001E1CA68C (uncharacterized protein LOC120968045 n=4 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=UPI001E1CA68C) HSP 1 Score: 53.5 bits (127), Expect = 3.340e-6 Identity = 32/85 (37.65%), Postives = 45/85 (52.94%), Query Frame = 1
Query: 22 QLITLGVRDNNNNILLVASAIVDKEDEASYTYFLRNCMKSAAFASTFNSADMTIFIDVHKGSPPALKKCLPNAETYRCLQHYLKN 276
Q++ RD NNNI +A AIVDKE+ AS+++FL +K A + TI D KG A+ PN + CL+H +N
Sbjct: 213 QILAATGRDGNNNIFPIAFAIVDKENTASWSWFLTQ-LKYAIGGESGKFGYYTIISDRQKGLLTAINNVFPNCKQRFCLRHIYQN 296
BLAST of mRNA_H-elongata_contig47985.11933.1 vs. uniprot
Match: UPI001E1C9E67 (uncharacterized protein LOC120975571 n=3 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=UPI001E1C9E67) HSP 1 Score: 53.5 bits (127), Expect = 3.430e-6 Identity = 32/85 (37.65%), Postives = 45/85 (52.94%), Query Frame = 1
Query: 22 QLITLGVRDNNNNILLVASAIVDKEDEASYTYFLRNCMKSAAFASTFNSADMTIFIDVHKGSPPALKKCLPNAETYRCLQHYLKN 276
Q++ RD NNNI +A AIVDKE+ AS+++FL +K A + TI D KG A+ PN + CL+H +N
Sbjct: 940 QILAATGRDGNNNIFPIAFAIVDKENTASWSWFLTQ-LKYAIGGESGKFGYYTIISDRQKGLLTAINNVFPNCKQRFCLRHIYQN 1023
BLAST of mRNA_H-elongata_contig47985.11933.1 vs. uniprot
Match: A0A6A3D4R8_HIBSY (Uncharacterized protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3D4R8_HIBSY) HSP 1 Score: 52.0 bits (123), Expect = 1.190e-5 Identity = 31/92 (33.70%), Postives = 49/92 (53.26%), Query Frame = 1
Query: 1 MKTYHHGQLITLGVRDNNNNILLVASAIVDKEDEASYTYFLRNCMKSAAFASTFNSADMTIFIDVHKGSPPALKKCLPNAETYRCLQHYLKN 276
+K Y+ G L+ D N++I +A A+V+ E+E+S+T+FL + A S ++T D KG A+ LPNAE C++H N
Sbjct: 406 LKGYYGGTLLAAVGIDGNDSIYPIAYAVVESENESSWTWFL---LLLATDLEIETSHNITFMSDKQKGLVEAMMHVLPNAEHRTCVRHLYSN 494
BLAST of mRNA_H-elongata_contig47985.11933.1 vs. uniprot
Match: A0A6D2KW85_9BRAS (SWIM-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KW85_9BRAS) HSP 1 Score: 51.2 bits (121), Expect = 2.050e-5 Identity = 31/88 (35.23%), Postives = 45/88 (51.14%), Query Frame = 1
Query: 13 HHGQLITLGVRDNNNNILLVASAIVDKEDEASYTYFLRNCMKSAAFASTFNSADMTIFIDVHKGSPPALKKCLPNAETYRCLQHYLKN 276
+ G L+T +D N + +A A+VD EDE S+T+FL + A +S +TI D HK P A+K P A C+ H +N
Sbjct: 57 YQGVLLTAVGQDANFQLFPLAYAVVDVEDEESWTWFLTKLEQILA-----DSPTLTIVSDRHKAIPLAIKAAYPKATHVACIVHLARN 139
BLAST of mRNA_H-elongata_contig47985.11933.1 vs. uniprot
Match: A0A834LBD0_RHOSS (SWIM-type domain-containing protein n=1 Tax=Rhododendron simsii TaxID=118357 RepID=A0A834LBD0_RHOSS) HSP 1 Score: 51.2 bits (121), Expect = 2.190e-5 Identity = 32/92 (34.78%), Postives = 46/92 (50.00%), Query Frame = 1
Query: 1 MKTYHHGQLITLGVRDNNNNILLVASAIVDKEDEASYTYFLRNCMKSAAFASTFNSADMTIFIDVHKGSPPALKKCLPNAETYRCLQHYLKN 276
+K H GQL+ D NN I VA A+V+ E+EAS+++FL++ N TI D KG A++ LP E C++H N
Sbjct: 410 LKGPHGGQLLAAVGIDGNNQIYPVAYAMVEVEEEASWSWFLQHLKNDLQIP---NQPTFTIISDKQKGLMNAIRDLLPCVEHRHCVRHLHSN 498 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47985.11933.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig47985.11933.1 >prot_H-elongata_contig47985.11933.1 ID=prot_H-elongata_contig47985.11933.1|Name=mRNA_H-elongata_contig47985.11933.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=92bp MKTYHHGQLITLGVRDNNNNILLVASAIVDKEDEASYTYFLRNCMKSAAFback to top mRNA from alignment at H-elongata_contig47985:421..696+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig47985.11933.1 ID=mRNA_H-elongata_contig47985.11933.1|Name=mRNA_H-elongata_contig47985.11933.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=276bp|location=Sequence derived from alignment at H-elongata_contig47985:421..696+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig47985:421..696+ >mRNA_H-elongata_contig47985.11933.1 ID=mRNA_H-elongata_contig47985.11933.1|Name=mRNA_H-elongata_contig47985.11933.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=552bp|location=Sequence derived from alignment at H-elongata_contig47985:421..696+ (Himanthalia elongata Himel1 dioecious)back to top |