mRNA_H-elongata_contig47937.11931.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig47937.11931.1
Unique NamemRNA_H-elongata_contig47937.11931.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47937.11931.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig47937contigH-elongata_contig47937:189..609 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size409
Cds size246
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig47937.11931.1prot_H-elongata_contig47937.11931.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig47937 340..597 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930790.6065598-UTR-H-elongata_contig47937:188..3391622930790.6065598-UTR-H-elongata_contig47937:188..339Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47937 189..339 +
1691679571.523829-UTR-H-elongata_contig47937:188..3391691679571.523829-UTR-H-elongata_contig47937:188..339Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47937 189..339 +
1622930790.6604311-UTR-H-elongata_contig47937:597..6091622930790.6604311-UTR-H-elongata_contig47937:597..609Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47937 598..609 +
1691679571.551876-UTR-H-elongata_contig47937:597..6091691679571.551876-UTR-H-elongata_contig47937:597..609Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47937 598..609 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930790.6252592-CDS-H-elongata_contig47937:339..5121622930790.6252592-CDS-H-elongata_contig47937:339..512Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47937 340..512 +
1691679571.5326645-CDS-H-elongata_contig47937:339..5121691679571.5326645-CDS-H-elongata_contig47937:339..512Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47937 340..512 +
1622930790.64162-CDS-H-elongata_contig47937:524..5971622930790.64162-CDS-H-elongata_contig47937:524..597Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47937 525..597 +
1691679571.5418875-CDS-H-elongata_contig47937:524..5971691679571.5418875-CDS-H-elongata_contig47937:524..597Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47937 525..597 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig47937.11931.1

>prot_H-elongata_contig47937.11931.1 ID=prot_H-elongata_contig47937.11931.1|Name=mRNA_H-elongata_contig47937.11931.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=82bp
MVVVVVAVIVAHFVSFCFILVFANITAWPSAICTFLIFTSLFLSARKALF
FALFIIRTIYVCVCKCTYCRDWNSSRALRGC*
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mRNA from alignment at H-elongata_contig47937:189..609+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig47937.11931.1 ID=mRNA_H-elongata_contig47937.11931.1|Name=mRNA_H-elongata_contig47937.11931.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=421bp|location=Sequence derived from alignment at H-elongata_contig47937:189..609+ (Himanthalia elongata Himel1 dioecious)
ATGCTCTACTCTCTACGCTGTAGCCTTAACTATTAAGCACTTCTGCTGAC
GCGAGGCATTCTTGGTGTGCCTCCCTTTCTTGTCGACGGGAAGGCAAGAC
AATCTCACTAACGTTACTAACTGTTCGACTCGAAGTACGTGCTAGGTCGT
TATGGTTGTGGTGGTGGTAGCTGTAATTGTTGCTCATTTTGTTTCGTTTT
GTTTCATTTTGGTCTTCGCCAATATTACCGCGTGGCCCTCGGCGATATGT
ACATTCTTAATCTTCACCTCTCTCTTCCTATCGGCACGGAAGGCGCTCTT
TTTCGCTTTGTTCATCATACGCACTATATATATATATATATATGTGTGTG
TCTGTAAATGTACATATTGCCGAGATTGGAACTCCTCGAGGGCGCTGCGC
GGTTGCTGAGGTTCCGCGGAC
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Coding sequence (CDS) from alignment at H-elongata_contig47937:189..609+

>mRNA_H-elongata_contig47937.11931.1 ID=mRNA_H-elongata_contig47937.11931.1|Name=mRNA_H-elongata_contig47937.11931.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=492bp|location=Sequence derived from alignment at H-elongata_contig47937:189..609+ (Himanthalia elongata Himel1 dioecious)
ATGGTTGTGGTGGTGGTAGCTGTAATTGTTGCTCATTTTGTTTCGTTTTG
TTTCATTTTGGTCTTCGCCAATATTACCGCGTGGCCCTCGGCGATATGTA
CATTCTTAATCTTCACCTCTCTCTTCCTATCGGCACGGAAGGCGCTCTTT
TTCGCTTTGTTCATCATACGCACATGGTTGTGGTGGTGGTAGCTGTAATT
GTTGCTCATTTTGTTTCGTTTTGTTTCATTTTGGTCTTCGCCAATATTAC
CGCGTGGCCCTCGGCGATATGTACATTCTTAATCTTCACCTCTCTCTTCC
TATCGGCACGGAAGGCGCTCTTTTTCGCTTTGTTCATCATACGCACTATA
TATGTGTGTGTCTGTAAATGTACATATTGCCGAGATTGGAACTCCTCGAG
GGCGCTGCGCGGTTGCTGATATATATGTGTGTGTCTGTAAATGTACATAT
TGCCGAGATTGGAACTCCTCGAGGGCGCTGCGCGGTTGCTGA
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