mRNA_H-elongata_contig47932.11930.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig47932.11930.1
Unique NamemRNA_H-elongata_contig47932.11930.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig47932.11930.1 vs. uniprot
Match: D7FVS6_ECTSI (G-rich sequence factor 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVS6_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 4.520e-24
Identity = 46/86 (53.49%), Postives = 66/86 (76.74%), Query Frame = 1 
Query:    1 VQVDGIAFNVSQGEVEQWFRDAGVTPAKVTLVMRPEDSPRAGQNKGRAFVELETEEDTQTSLSVSGRSMGDRWVSIARLDSPLEEV 258
            +QVDG+ F ++  E+EQWF +AG +P KVT+ + PE S RAGQNKG+A++    EED + +LS+SGRS+G+RW++I+RL  PLEE 
Sbjct:  123 IQVDGLPFTMATEELEQWFEEAGCSPPKVTVPLWPERSIRAGQNKGKAYLHFSGEEDVRKALSLSGRSIGERWINISRLAQPLEEA 208
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BLAST of mRNA_H-elongata_contig47932.11930.1 vs. uniprot
Match: A0A6H5KVQ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVQ1_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 7.940e-24
Identity = 47/85 (55.29%), Postives = 66/85 (77.65%), Query Frame = 1 
Query:    1 VQVDGIAFNVSQGEVEQWFRDAGVTPAKVTLVMRPEDSPRAGQNKGRAFVELETEEDTQTSLSVSGRSMGDRWVSIARLDSPLEE 255
            +QV+G+ F ++  E+EQWF +A  +PAKV + + PE S RAGQNKG A++   +EEDTQ +LS+SGRS+GDRW++I+RL  PLEE
Sbjct:  123 IQVNGLPFTMATEEIEQWFDEAACSPAKVVVPLWPERSIRAGQNKGMAYLYFSSEEDTQKALSLSGRSIGDRWINISRLVQPLEE 207
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47932.11930.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FVS6_ECTSI4.520e-2453.49G-rich sequence factor 1 n=1 Tax=Ectocarpus silicu... [more]
A0A6H5KVQ1_9PHAE7.940e-2455.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig47932contigH-elongata_contig47932:3555..3830 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size276
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930790.5643477-CDS-H-elongata_contig47932:3554..38301622930790.5643477-CDS-H-elongata_contig47932:3554..3830Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47932 3555..3830 +
1691679571.5147102-CDS-H-elongata_contig47932:3554..38301691679571.5147102-CDS-H-elongata_contig47932:3554..3830Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47932 3555..3830 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig47932.11930.1prot_H-elongata_contig47932.11930.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig47932 3555..3830 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig47932.11930.1

>prot_H-elongata_contig47932.11930.1 ID=prot_H-elongata_contig47932.11930.1|Name=mRNA_H-elongata_contig47932.11930.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=92bp
VQVDGIAFNVSQGEVEQWFRDAGVTPAKVTLVMRPEDSPRAGQNKGRAFV
ELETEEDTQTSLSVSGRSMGDRWVSIARLDSPLEEVRGKNLM
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mRNA from alignment at H-elongata_contig47932:3555..3830+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig47932.11930.1 ID=mRNA_H-elongata_contig47932.11930.1|Name=mRNA_H-elongata_contig47932.11930.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=276bp|location=Sequence derived from alignment at H-elongata_contig47932:3555..3830+ (Himanthalia elongata Himel1 dioecious)
GTCCAGGTCGATGGAATCGCGTTTAACGTGTCTCAGGGAGAAGTTGAGCA
ATGGTTCAGGGACGCCGGGGTGACTCCTGCAAAGGTGACCCTGGTCATGA
GGCCAGAGGACTCCCCGCGGGCCGGGCAGAACAAGGGTAGGGCCTTCGTC
GAATTGGAGACCGAGGAGGACACGCAGACATCTTTGAGCGTCAGTGGGAG
GTCGATGGGAGATCGATGGGTTAGCATCGCTCGTTTGGACTCGCCTCTCG
AAGAGGTGAGAGGAAAGAACCTGATG
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Coding sequence (CDS) from alignment at H-elongata_contig47932:3555..3830+

>mRNA_H-elongata_contig47932.11930.1 ID=mRNA_H-elongata_contig47932.11930.1|Name=mRNA_H-elongata_contig47932.11930.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=552bp|location=Sequence derived from alignment at H-elongata_contig47932:3555..3830+ (Himanthalia elongata Himel1 dioecious)
GTCCAGGTCGATGGAATCGCGTTTAACGTGTCTCAGGGAGAAGTTGAGCA
ATGGTTCAGGGACGCCGGGGTGACTCCTGCAAAGGTGACCCTGGTCATGA
GGCCAGAGGACTCCCCGCGGGCCGGGCAGAACAAGGGTAGGGCCTTCGTC
GAATTGGAGACCGAGGAGGACACGCAGACATCTTTGAGCGTCAGTGGGAG
GTCGATGGGAGATCGATGGGTTAGCATCGCTCGTTTGGACTCGCCTCTCG
AAGAGGTGAGAGGAAAGAACCTGATGGTCCAGGTCGATGGAATCGCGTTT
AACGTGTCTCAGGGAGAAGTTGAGCAATGGTTCAGGGACGCCGGGGTGAC
TCCTGCAAAGGTGACCCTGGTCATGAGGCCAGAGGACTCCCCGCGGGCCG
GGCAGAACAAGGGTAGGGCCTTCGTCGAATTGGAGACCGAGGAGGACACG
CAGACATCTTTGAGCGTCAGTGGGAGGTCGATGGGAGATCGATGGGTTAG
CATCGCTCGTTTGGACTCGCCTCTCGAAGAGGTGAGAGGAAAGAACCTGA
TG
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