mRNA_H-elongata_contig47929.11929.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig47929.11929.1
Unique NamemRNA_H-elongata_contig47929.11929.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig47929.11929.1 vs. uniprot
Match: D7FMI8_ECTSI (NPC1_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMI8_ECTSI)

HSP 1 Score: 411 bits (1057), Expect = 2.300e-140
Identity = 200/308 (64.94%), Postives = 242/308 (78.57%), Query Frame = 1
Query:    1 CFQAGVDTECTPEQAK-DGALSFPLDSAHGFGVLHDKVWDGSVENPSTGLCRRGTPDEEGRCMVDFVAPKGLDPVAPVICPQYEDDGCCSWQQNYALYQNLRTLVDSFGSSTGCLACAVNLVNFWCALVCSPDQGAFVTLHDPPYAEASRADDLTGGSGTVLQADVVVDGDLACRIYESCRSVAIVGETTGMQSGLGLLKFQMQTGAVGHGEYFFLSF-ANATSDSAKRDARLQWDMSTLDTHANIISRGAPVPTLSAFSKAKEDHNGGSALALETLSCESFYNPGTKNVPFAYPPPTKDIDSCRQDH 918
            CFQ G+DT+CTP  A+ D A+SFP+DS+HGFGV HDKVWDGSVENPSTGLC  G PD +GRC+VDFVAPKGL  VAP++CPQY+D GCCSWQQNYALYQNL  LV+SFGS+TGCLACAVNLVNFWCALVCSPDQGAF ++HDPP+ +  R DDLTGGS  VLQ DV VDGD+ACRIYESC+S+A+VGETT MQSGLGLLKFQ+QTGAVGHGE+FF SF  NA+++S   + RL      LD  A    +  P    SA + + E     S+++ +TL+C+SF++PG+  +PFAYPP  +DI SC  D+
Sbjct:   48 CFQFGLDTDCTPIPAEGDTAVSFPMDSSHGFGVFHDKVWDGSVENPSTGLCDEGRPDSDGRCIVDFVAPKGLKDVAPIVCPQYKDSGCCSWQQNYALYQNLGLLVESFGSTTGCLACAVNLVNFWCALVCSPDQGAFASMHDPPFDQ--RRDDLTGGSSRVLQLDVNVDGDMACRIYESCKSIAVVGETTAMQSGLGLLKFQLQTGAVGHGEFFFPSFETNASAESPCGNKRLPVS-GGLDVRATE-RKDDPQAAASAPTASSES----SSMSFDTLACDSFFDPGSSTIPFAYPPKREDIISCTCDY 347          
BLAST of mRNA_H-elongata_contig47929.11929.1 vs. uniprot
Match: A0A835YTW9_9STRA (NPC1_N domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTW9_9STRA)

HSP 1 Score: 321 bits (823), Expect = 1.250e-105
Identity = 161/308 (52.27%), Postives = 204/308 (66.23%), Query Frame = 1
Query:    1 CFQAGVDTECTPEQAKDGALS--FPLDSAHGFGVLHDKVWDGSVENPSTGLCRRGTPDEEGRCMVDFVAPKGLDPVAPVICPQYEDDGCCSWQQNYALYQNLRTLVDSFGSSTGCLACAVNLVNFWCALVCSPDQGAFVTLHDPPYAEASRADDLTGGSGT-VLQADVVVDGDLACRIYESCRSVAIVGETTGMQSGLGLLKFQMQTGAVGHGEYFFLSFANATSDSAKR--DARLQWDM-STLDTHANIISRGAPVPTLSAFSKAKEDHNGGSALALETLSCESFYNPGTKNVPFAYPPPTKDIDSC 906
            CFQ GVDT CTP +  D   S  FP+++AHGF V HD +WDGS+ + S+GLC RG PD +GRC+  + A   L  VAP++CPQY   GCC+WQQNYAL+QNLRTLVDSFG +TGCLACA NLVN WCALVCSP QG++VTLHDPP   A   DDLTG +   VLQADVV+D D AC ++ESC + AI G +T MQS +GLL+FQ+QTGA+GHGEYF+L+F    + +A R  D R    +    D   +  +  AP P  S F               + L C+S++ PG+ + PF YPPP + + SC
Sbjct:   17 CFQNGVDTACTPREYTDRESSAPFPMNAAHGFNVAHDTIWDGSMADASSGLCARGRPDVQGRCIQSWDA--SLAAVAPIMCPQYAGAGCCTWQQNYALFQNLRTLVDSFGGATGCLACAANLVNLWCALVCSPQQGSYVTLHDPP--RALMDDDLTGAAQLPVLQADVVLDADYACAVFESCSATAIAGASTAMQSAVGLLQFQLQTGAIGHGEYFYLAFDGRAAPNATRSHDVRCPHQLVQREDAEQSTQALPAPEPQYSGFK-------------TDVLQCDSYWYPGSDSPPFPYPPPQQTLTSC 307          
BLAST of mRNA_H-elongata_contig47929.11929.1 vs. uniprot
Match: A0A6H5KYY4_9PHAE (NPC1_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYY4_9PHAE)

HSP 1 Score: 261 bits (668), Expect = 8.880e-83
Identity = 114/150 (76.00%), Postives = 131/150 (87.33%), Query Frame = 1
Query:    1 CFQAGVDTECTPEQAK-DGALSFPLDSAHGFGVLHDKVWDGSVENPSTGLCRRGTPDEEGRCMVDFVAPKGLDPVAPVICPQYEDDGCCSWQQNYALYQNLRTLVDSFGSSTGCLACAVNLVNFWCALVCSPDQGAFVTLHDPPYAEASR 447
            CFQ G+DT+CTP  A+ D A+SFP+DS+HGFGV HDKVWDGSVE+PSTGLC  G PD +GRC+VDFVAPKGL  VAP+ICPQY+D GCCSWQQNYALYQNL  LV+SFGS+TGCLACAVNLVNFWCALVCSPDQGAF ++HDPP+ +A  
Sbjct:  163 CFQFGLDTDCTPIPAEGDTAVSFPMDSSHGFGVFHDKVWDGSVEDPSTGLCDEGRPDSDGRCIVDFVAPKGLKDVAPIICPQYKDSGCCSWQQNYALYQNLGLLVESFGSTTGCLACAVNLVNFWCALVCSPDQGAFASMHDPPFDQAKE 312          
BLAST of mRNA_H-elongata_contig47929.11929.1 vs. uniprot
Match: K3X0G1_GLOUD (NPC1_N domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X0G1_GLOUD)

HSP 1 Score: 160 bits (404), Expect = 8.380e-43
Identity = 93/255 (36.47%), Postives = 128/255 (50.20%), Query Frame = 1
Query:   28 CTPEQAKDGALSFPLDSAHGFGVLHDKVWDGSVENPSTGLCRRGTPDEEGRCMVDFVAPKGLDPVAPVICPQYEDDGCCSWQQNYALYQNLRTLVDSFGSSTG--CLACAVNLVNFWCALVCSPDQGAFVTLHDPPYAEASRADDLTGGSGT-VLQADVVVDGDLACRIYESCRSVAIVGETTGMQSGLGLLKFQMQTGAVGHGEYFFLSF--ANATSDSAKRDAR-------------LQWDMSTLDTHANIIS 738
            C PE     A   P+  A    V       G  +  S G C  G       C+ D +       +  + CP+Y+D  CCSWQQN A+ +N + L ++F ++ G  C ACAVNL+N WC L+CSP Q  F+ +H P  +   R D +TG     VL+ DV +D    C +Y+SC++ AI     GM+S LG L +QMQTGA+GHGEY  L F  AN T+ +   DA                 D+ TL T A ++S
Sbjct:   48 CIPEAHAVPADPQPMRGASWANVTGGGACKGDSDCNSKGSCTNGAC----ACLNDGIVAGAHCELFAIQCPEYKDAACCSWQQNQAMAENFKVLANTFANNDGGGCDACAVNLLNLWCGLMCSPHQADFMRMHLPFPSINHRLDPMTGEENVKVLEMDVTLDKPFTCALYDSCKNTAIASVAEGMKSSLGFLNYQMQTGAIGHGEYMLLHFTSANTTTKATSADAFDHHVFKCSNYSEVTTMDIETLPTQAQLLS 298          
BLAST of mRNA_H-elongata_contig47929.11929.1 vs. uniprot
Match: H3H0H3_PHYRM (NPC1_N domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H0H3_PHYRM)

HSP 1 Score: 147 bits (371), Expect = 6.370e-39
Identity = 83/240 (34.58%), Postives = 119/240 (49.58%), Query Frame = 1
Query:   25 ECTPEQAKDGALSFPLDSAHGFGVLHDKVWDGSVENPSTGLCRRGTPDEEGRCMVDFVAPKGLDPVAPVICPQYEDDGCCSWQQNYALYQNLRTLVDSFG--SSTGCLACAVNLVNFWCALVCSPDQGAFVTLHDPPYAEASRADDLTGGSGT-VLQADVVVDGDLACRIYESCRSVAIVGETTGMQSGLGLLKFQMQTGAVGHGEYFFLSFANATSDSAKRDARLQWDMSTLDTHANII 735
            EC PE  K  A   P+        +       + +    G C  G       C  D +A         + CP Y+DD CCSWQQN A+ +N + +   F   S+ GC ACA NL+N WC LVCSP+Q  F+ +  P  +   R D +TG     VL+ DV +D D  C +++SC++ A+      M+S LG L +QMQ GAVGHGEY  L F      +A +DA  + D+     ++ ++
Sbjct:   40 ECIPEAHKQPAEPQPMTGDGWPSTIGGGSCTNATDCYGKGQCINGACV----CRQDGMAAGPHCNQFAIQCPAYKDDACCSWQQNQAMAENFKLVASVFAKNSAGGCDACAANLMNLWCGLVCSPEQDQFMQMAHPWPSTNYRPDPMTGKEKVKVLELDVALDKDFTCAVFDSCKNTAMASMAAAMKSSLGFLNYQMQVGAVGHGEYISLKF------NASKDASFEHDVLKCSNYSEVV 269          
BLAST of mRNA_H-elongata_contig47929.11929.1 vs. uniprot
Match: A0A8K1CL61_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CL61_PYTOL)

HSP 1 Score: 148 bits (373), Expect = 2.260e-38
Identity = 89/227 (39.21%), Postives = 120/227 (52.86%), Query Frame = 1
Query:   28 CTPEQAKDGALSFPLDSAHGFGVLHDKVWDGSV----ENPSTGLCRRGTPDEEGRCMVD-FVAPKGLDPVAPVICPQYEDDGCCSWQQNYALYQNLRTLVDSFGSST--GCLACAVNLVNFWCALVCSPDQGAFVTLHDPPYAEASRADDLTGGSGT-VLQADVVVDGDLACRIYESCRSVAIVGETTGMQSGLGLLKFQMQTGAVGHGEYFFLSFANATSDSAKRD 684
            C PE     A   P+D     G     V  G      +  + G C RG       C VD   A    D  A + CP+Y+D  CCSWQQN AL QN + +   FG ++  GC ACA NL+  WC ++CSP Q  F+ +H P  + + R D +TG     VL+ DV +  D  C +++SC++ AI   +  M+S LG L +QMQTGA+GHGEY  L F NATS++   D
Sbjct:   46 CIPE-----ANPMPVDPKPMTGAGWANVTGGGACTTDKECNKGACVRGNCV----CQVDGMTAGAHCDDFA-IQCPEYKDAACCSWQQNQALAQNFKLVTTIFGKNSVGGCDACATNLLELWCGMICSPRQSEFMKMHLPYPSNSYRPDPMTGKDHVKVLEMDVTLAKDFTCAVFDSCKNTAIASVSEAMKSSLGFLNYQMQTGAIGHGEYMHLHF-NATSNATAFD 261          
BLAST of mRNA_H-elongata_contig47929.11929.1 vs. uniprot
Match: A0A662XWU5_9STRA (NPC1_N domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XWU5_9STRA)

HSP 1 Score: 142 bits (357), Expect = 5.200e-37
Identity = 69/152 (45.39%), Postives = 96/152 (63.16%), Query Frame = 1
Query:  229 VICPQYEDDGCCSWQQNYALYQNLRTLVDSFG--SSTGCLACAVNLVNFWCALVCSPDQGAFVTLHDPPYAEASRADDLTGGSGT-VLQADVVVDGDLACRIYESCRSVAIVGETTGMQSGLGLLKFQMQTGAVGHGEYFFLSFANATSDSA 675
            + CP Y+DD CCSWQQN A+ +N + +   F   S+ GC ACA NL+N WC LVCSP Q  F+ L  P  +   R D +TG     VL+ DV +D D  C +++SC++ A+      M+S LG L +QMQ GAVGHGE+  L+F NA++D++
Sbjct:   12 IQCPAYKDDACCSWQQNRAMAENFQLVASVFARNSAGGCDACAANLMNLWCGLVCSPAQDQFMQLAHPWPSTTYRPDPMTGKERVKVLELDVALDKDFTCAVFDSCKNTAMASMAAAMKSSLGFLNYQMQVGAVGHGEFITLAF-NASADAS 162          
BLAST of mRNA_H-elongata_contig47929.11929.1 vs. uniprot
Match: M4C709_HYAAE (NPC1_N domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C709_HYAAE)

HSP 1 Score: 134 bits (338), Expect = 4.370e-35
Identity = 73/182 (40.11%), Postives = 102/182 (56.04%), Query Frame = 1
Query:  229 VICPQYEDDGCCSWQQNYALYQNLRTLVDSFGSST--GCLACAVNLVNFWCALVCSPDQGAFVTLHDPPYAEASRADDLTGGSGT-VLQADVVVDGDLACRIYESCRSVAIVGETTGMQSGLGLLKFQMQTGAVGHGEYFFLSFANATSDSAKRDARLQWDMSTLD--THANIISRGAPVPT 759
            + CP Y    CCSWQQN A+ +N + L   F  ++  GC ACA NL+  WC LVCSP+Q  F+ L     +   R D LTG     VL+  V +D D  C I++SC++ A+      M+S +G L +QMQ GAVGHGEY  L F NA+ D +       +D S L+   ++ I++R   +PT
Sbjct:   12 IQCPMYMASACCSWQQNEAMAENFKLLASVFAKNSVGGCDACAANLMELWCGLVCSPEQDEFMQLAHAWPSTTFRPDPLTGNERVKVLELFVALDKDFTCAIFDSCKNTAMASMAAAMKSSIGFLNYQMQVGAVGHGEYMTLHF-NASKDKS-------FDSSVLNCSNYSEIVTRRETLPT 185          
BLAST of mRNA_H-elongata_contig47929.11929.1 vs. uniprot
Match: A0A024U1M0_9STRA (NPC1_N domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U1M0_9STRA)

HSP 1 Score: 138 bits (347), Expect = 6.380e-35
Identity = 68/177 (38.42%), Postives = 100/177 (56.50%), Query Frame = 1
Query:  142 GLCRRGTPDEEGRCMVDFVAPKGLDPVAPVICPQYEDDGCCSWQQNYALYQNLRTLVDSFGSSTG-CLACAVNLVNFWCALVCSPDQGAFVTLHDPPYAEASRADDLTGGSGT-VLQADVVVDGDLACRIYESCRSVAIVGETTGMQSGLGLLKFQMQTGAVGHGEYFFLSFANATS 666
            G C       +G C+    A    D  A + CP+Y+DD CCSWQQN AL  N + +   FGS  G C ACAVN++  WC LVCSP Q  F+ +H P  + + R D +TG     VL+ +V +     C +++SC++  +V  T  ++S +G L +Q QTG++GHG++ +L F    S
Sbjct:   43 GACSTDADCHKGTCVDGVTAGAHCDDFA-IQCPEYKDDACCSWQQNRALAANFKLISSFFGSDGGGCDACAVNIMQLWCGLVCSPFQADFMQMHMPYPSNSFRLDPMTGVDHVKVLEMNVSLSTPFTCGLFDSCKNTPLVSVTDALKSSVGFLNYQAQTGSIGHGQFMYLQFGRNAS 218          
BLAST of mRNA_H-elongata_contig47929.11929.1 vs. uniprot
Match: A0A2D4C7W7_PYTIN (NPC1_N domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C7W7_PYTIN)

HSP 1 Score: 137 bits (346), Expect = 1.190e-34
Identity = 76/209 (36.36%), Postives = 114/209 (54.55%), Query Frame = 1
Query:  229 VICPQYEDDGCCSWQQNYALYQNLRTLVDSFGSSTG--CLACAVNLVNFWCALVCSPDQGAFVTLHDPPYAEASRADDLTGGSGT-VLQADVVVDGDLACRIYESCRSVAIVGETTGMQSGLGLLKFQMQTGAVGHGEYFFLSFANATSDSAKRDAR-LQWD--MSTLDTHANIISRGAPVPTLSAFSKAKEDHNGGSALALETLSCES 837
            + CP+++D  CC+WQQN  + QN + L   FG + G  C ACA NL+  WC LVCSP Q  F+ +H P  +   R D +T      VL+ DV +     C +++SC++ AI   +  M+S LG L +Q QTGA+GHGEY +L F NATS++   D   L+ D         A++ ++   +P++++   AKE   G      +  S  S
Sbjct:   81 IQCPEHKDAACCTWQQNEGIAQNFKLLASVFGQNDGGGCDACAANLMQLWCGLVCSPRQDEFMKMHLPYPSINHRKDPMTDKDNVKVLELDVTLSKSFTCALFDSCKNTAIASVSEAMKSSLGFLNYQAQTGAIGHGEYMYLHF-NATSNATAFDHHVLKCDNYSEVTSLKASLPAQAQQLPSIASPDAAKECPCGACRATCDAHSSSS 288          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47929.11929.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
D7FMI8_ECTSI2.300e-14064.94NPC1_N domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A835YTW9_9STRA1.250e-10552.27NPC1_N domain-containing protein n=1 Tax=Tribonema... [more]
A0A6H5KYY4_9PHAE8.880e-8376.00NPC1_N domain-containing protein n=1 Tax=Ectocarpu... [more]
K3X0G1_GLOUD8.380e-4336.47NPC1_N domain-containing protein n=1 Tax=Globispor... [more]
H3H0H3_PHYRM6.370e-3934.58NPC1_N domain-containing protein n=1 Tax=Phytophth... [more]
A0A8K1CL61_PYTOL2.260e-3839.21Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A662XWU5_9STRA5.200e-3745.39NPC1_N domain-containing protein n=1 Tax=Nothophyt... [more]
M4C709_HYAAE4.370e-3540.11NPC1_N domain-containing protein n=1 Tax=Hyalopero... [more]
A0A024U1M0_9STRA6.380e-3538.42NPC1_N domain-containing protein n=1 Tax=Aphanomyc... [more]
A0A2D4C7W7_PYTIN1.190e-3436.36NPC1_N domain-containing protein n=1 Tax=Pythium i... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig47929contigH-elongata_contig47929:184..3990 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score413.7
Seed ortholog evalue7.5e-113
Seed eggNOG ortholog2880.D7FMI8
EggNOG free text desc.Niemann-Pick C1 N terminus
EggNOG OGs28I52@1,2QQFF@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons6
Model size918
Cds size918
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig47929.11929.1prot_H-elongata_contig47929.11929.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig47929 184..3990 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930790.4104877-CDS-H-elongata_contig47929:183..4491622930790.4104877-CDS-H-elongata_contig47929:183..449Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47929 184..449 -
1691679571.4454448-CDS-H-elongata_contig47929:183..4491691679571.4454448-CDS-H-elongata_contig47929:183..449Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47929 184..449 -
1622930790.43081-CDS-H-elongata_contig47929:944..10111622930790.43081-CDS-H-elongata_contig47929:944..1011Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47929 945..1011 -
1691679571.45454-CDS-H-elongata_contig47929:944..10111691679571.45454-CDS-H-elongata_contig47929:944..1011Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47929 945..1011 -
1622930790.4483788-CDS-H-elongata_contig47929:1465..16061622930790.4483788-CDS-H-elongata_contig47929:1465..1606Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47929 1466..1606 -
1691679571.4625247-CDS-H-elongata_contig47929:1465..16061691679571.4625247-CDS-H-elongata_contig47929:1465..1606Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47929 1466..1606 -
1622930790.4681642-CDS-H-elongata_contig47929:2182..23091622930790.4681642-CDS-H-elongata_contig47929:2182..2309Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47929 2183..2309 -
1691679571.471214-CDS-H-elongata_contig47929:2182..23091691679571.471214-CDS-H-elongata_contig47929:2182..2309Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47929 2183..2309 -
1622930790.4847414-CDS-H-elongata_contig47929:2859..29971622930790.4847414-CDS-H-elongata_contig47929:2859..2997Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47929 2860..2997 -
1691679571.4871807-CDS-H-elongata_contig47929:2859..29971691679571.4871807-CDS-H-elongata_contig47929:2859..2997Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47929 2860..2997 -
1622930790.5031843-CDS-H-elongata_contig47929:3811..39901622930790.5031843-CDS-H-elongata_contig47929:3811..3990Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47929 3812..3990 -
1691679571.5046878-CDS-H-elongata_contig47929:3811..39901691679571.5046878-CDS-H-elongata_contig47929:3811..3990Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47929 3812..3990 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig47929.11929.1

>prot_H-elongata_contig47929.11929.1 ID=prot_H-elongata_contig47929.11929.1|Name=mRNA_H-elongata_contig47929.11929.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=306bp
CFQAGVDTECTPEQAKDGALSFPLDSAHGFGVLHDKVWDGSVENPSTGLC
RRGTPDEEGRCMVDFVAPKGLDPVAPVICPQYEDDGCCSWQQNYALYQNL
RTLVDSFGSSTGCLACAVNLVNFWCALVCSPDQGAFVTLHDPPYAEASRA
DDLTGGSGTVLQADVVVDGDLACRIYESCRSVAIVGETTGMQSGLGLLKF
QMQTGAVGHGEYFFLSFANATSDSAKRDARLQWDMSTLDTHANIISRGAP
VPTLSAFSKAKEDHNGGSALALETLSCESFYNPGTKNVPFAYPPPTKDID
SCRQDH
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mRNA from alignment at H-elongata_contig47929:184..3990-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig47929.11929.1 ID=mRNA_H-elongata_contig47929.11929.1|Name=mRNA_H-elongata_contig47929.11929.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3807bp|location=Sequence derived from alignment at H-elongata_contig47929:184..3990- (Himanthalia elongata Himel1 dioecious)
TGCTTCCAGGCGGGAGTAGATACAGAATGCACCCCGGAACAGGCGAAAGA CGGAGCGTTGTCGTTTCCCTTAGATTCGGCACATGGATTCGGCGTGCTGC ACGATAAGGTTTGGGATGGGTCCGTCGAGAATCCATCGACCGGATTGTGC CGCCGAGGAACGCCGGACGAAGAGGGCAGGTTGGTTCAAATGCTACAATC TCATATCTGTCACAGTAGTATGCCCTTAAGTTAATTTGCACTTTCCGCCC TTAGAGTTGATTTGACCCTGTAAGATGTAAGGAGGCGTTATCGTCAGCAC TAATGGTGGTGTATACCGTAGCCCCCCCCCGGGGGGAACGGAAGATTGCC CAGTACACGACCTGTGTCTTGGAAATACATCGTCAGTTTGGTTTGCGCTC CGGGGTTCGCTGTCTAGCTTGCAGCTGGGTGTAACGGGTTTGAAACGAAC GTCGACGGATGTACTGTTTTATTCTCGGCATCCAGTGCCGATCAGATCGC GGTCGCGGTCGCCAAATGTAATGTTTTACCTCGGACAACTCACTGACTCC ATTGAGGTTTCCTTTCCCTGCCCCCCGACTCCGACTCTATTCCATATAGC ATATAGCATATAGCCATGAGTTTCGAGACCTCCGATGCCCAAACATTAAA AACGATTCCTAAATGCAGGGATTCCGAAGCCTTTGATCTTCAAATAACTC TTAGCGTACTCGAGTATTATAGTGTAATATATTGTAATATAGTGTAATAT AGTGTAACATAGTGTAATATAGTGTAACATAGTGTAATATATTGTAATAT AGTGTAATATAGTGTAACATAGTGTAATATAGTGTAACATAGTGTAATAT AGTGTAATATAGTGTAATGTAGTGTAATATAGTGTAATGTAGTGTAACAT AGTGTAATATAGTGTAATGTAGTGTAATATAGTGTAATATAGTGTACTTG GCCCATAATAATGCTATTATATCTTGCTATCTTGTTCCGACAGGTGCATG GTAGACTTTGTTGCCCCCAAAGGATTGGATCCCGTGGCGCCTGTCATTTG CCCGCAGTACGAGGACGATGGGTGCTGCAGCTGGCAGCAGAATTACGCTC TGTACCAGAACCTAAGGACGCTCGTCGACAGGTATGGATTTCCTACGGAA GACCCCAGTGCGGGTGTTCAGGTTGCGTCTTGCACCGTGCATGAGGAACC CTATTAATAGTCCAACAACATTTTCGGTCTTCTCGATACTGAATACTATA CTAGCATATTATTATTACAGTTAAATAGTTAAATAGTTAAATGTAGTATT AATAGAGTAATCTTTAGTCCTTAATTATATAGATTTATTTTCTTTCCCAT GGCGAGGCGATTGGGCTGTACTGTACTAAATACTAAATTGGGCTGTCGTG GCAGACTAACTGACTGGATTTGACACTGGATTTGACTTACCTCTGCAGAG CTTAATTGTACGCACACGTCCATGCACGCACTACGGGTGCTTTGGGTAAC TGCCTCAAAATGCGATCACGAAATCGATCTAACCTTCCCCCCGTTTCGCT GTGACGTCACCACCATTACCACCATGTTGTGGCGCTGTCATGATAATGTC ATCATGATGTTGTGGCGCTGTTATCCCGCTGTTTTGTCTTTTTTTGCACT GCTATGACGCTATTTCCTTTATTTATGAAAGCTTCGGTTCCTCTACGGGA TGTCTGGCCTGCGCGGTTAACCTGGTAAACTTCTGGTGTGCTCTTGTTTG CTCCCCTGACCAAGGCGCATTCGTTACGTTGCACGATCCGCCGTATGCTG AGGCGAGTGTGGGTATCTTATCTTACATTATCAGTATGCAAGTATTTCTA TCGTTTTTTAGGATTTAGTTTAGCTAGGCTCCTTTTGCAGCTCTTACCAT ACCAATACCAATACCACTACCATACCATACCATACCACTACTGTACCACT ACCGTACGGTATTAATAGCTGCCAAATGTAATTTTAGCTCTCAAAGGACG ACAATGAGGCGTCACGGCCTCATCGCGAAAATAAAACATGTTTGCACACG CATCTTTTATTTTCTCCCCCTCGAGGTGACGATCCTTTATCCTTCATTGT TCACCTATACTGCAGACGAAGGTATCCCATCGCGCCAGAACTCTGAACAG TCCTTATATTATAGAGCTAGAGCTTATGAATTTCTATTTACTTGAGCACA CAGCCTTAGCTAGAGCCAAAGCTAGATAACGGTATGATATGGTATGATAA CGGTATGATATGGTATAATAACGGTATGGTACGGTACGATAACGGTATGG TTTGATATGATATCGTAGAAAGAACCCTCCTGCGCCGTTGCCCTTGCATT GCATCCTTGCGTTGCTATTGGTGCTCTCTGACAGAGGGCAGACGACCTTA CAGGTGGCTCCGGAACAGTCCTCCAGGCAGACGTCGTTGTCGATGGAGAT CTAGCATGCCGGATCTACGAGTCATGCAGAAGCGTGGCTATTGTCGGAGA GACTACAGGAATGCAGTCCGGACTGGTGAGAAAATATAATAAGCAGACCA GGACTCTCCGCTCCGCTCGGTCATGGTCTATTCTCACTATTCACTACTCA CTATGTTACCTACATGCGGAGGGGGTTGATATTATTTTTCAAGTCTGAAT ATTCTTTACGGTTTACGGTTTACGGTACCGGTTATGTTGAGAAGGACTGT TGCCGCGGCAAGGACTAAATCACTAAATCACTAAGTCACTAAATCACTAA AACGTATCAAGCGGAGACCACGATGTCAGAGAGTCAGAGTGTCAAAGTGC CAGAGTTCCAGTAATTAATATGAGATGCAGTATATGCGCTAAGCCATATC TTGACCTGACTCCACACTGCCTTAACAATGCTGAGAACGAGTGTGTCCGT GTGTTTTATGTGATTTGTTGTAAATTGGCGTTTTGTGTTCTGTGCTTGCT CGATCGGCCATTGCGAGACATGTTAACAGGGCCTCCTAAAGTTCCAGATG CAAACAGGTGCGGTAGGCCACGGAGAGTACTTCTTCCTTTCATTTGGTGA GTACTATATACTATATCCTATATACTATATCCTATATCTTAAACCTCCAT CCCTCTAGACGATGGAGCCTGTGCCATGCATGGCGTGACGTGACGTCATC GTGAATAAAGCGTGAGAAGGTCGGTCAGGGAGAAGCTAGGCAGAAATTAG GACACAAACCGCATTGGAAGAAAATCACTCGATCCATTTAATTTCCTGTT TTTTGTTTGTGCTTCTCACGTCCTTTCTCGTCCTTTCTCCTTGGAGGGTA TAAAGGTATACAACTACAACAACCTCAACAATCACAATTCTGTCCTGTCA TTTCTCTTTATTGTCCTGTCGTTTTCTCTTTCTCTTTAATGAAGACGACC ATATCCCTTCGACGACCATATCCCTTCGCCGCCTCCTTTCGCGTTTTGTT AGATGTTAACCGTTAAACGTTATCCGTACGTAACATGCCCAATTTGCGAT ACTCCCTTGTGGTTGCGTTCGTTTACGTGTTCGTCATTTAGCCAACGCAA CCTCAGACTCTGCAAAGAGAGATGCGCGGTTGCAGTGGGATATGTCTACT CTTGACACCCACGCCAACATTATCAGCCGAGGCGCCCCTGTCCCAACATT ATCAGCATTTTCAAAAGCAAAAGAGGATCACAATGGCGGATCTGCCCTGG CCCTCGAGACTCTGTCGTGCGAGTCATTCTACAATCCTGGAACCAAGAAT GTTCCCTTCGCGTATCCTCCTCCAACAAAAGACATAGATTCTTGCAGGCA AGACCAT
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Coding sequence (CDS) from alignment at H-elongata_contig47929:184..3990-

>mRNA_H-elongata_contig47929.11929.1 ID=mRNA_H-elongata_contig47929.11929.1|Name=mRNA_H-elongata_contig47929.11929.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1836bp|location=Sequence derived from alignment at H-elongata_contig47929:184..3990- (Himanthalia elongata Himel1 dioecious)
TGCTTCCAGGCGGGAGTAGATACAGAATGCACCCCGGAACAGGCGAAAGA
CGGAGCGTTGTCGTTTCCCTTAGATTCGGCACATGGATTCGGCGTGCTGC
ACGATAAGGTTTGGGATGGGTCCGTCGAGAATCCATCGACCGGATTGTGC
CGCCGAGGAACGCCGGACGAAGAGGGCAGTGCTTCCAGGCGGGAGTAGAT
ACAGAATGCACCCCGGAACAGGCGAAAGACGGAGCGTTGTCGTTTCCCTT
AGATTCGGCACATGGATTCGGCGTGCTGCACGATAAGGTTTGGGATGGGT
CCGTCGAGAATCCATCGACCGGATTGTGCCGCCGAGGAACGCCGGACGAA
GAGGGCAGGTGCATGGTAGACTTTGTTGCCCCCAAAGGATTGGATCCCGT
GGCGCCTGTCATTTGCCCGCAGTACGAGGACGATGGGTGCTGCAGCTGGC
AGCAGAATTACGCTCTGTACCAGAACCTAAGGACGCTCGTCGACAGGTGC
ATGGTAGACTTTGTTGCCCCCAAAGGATTGGATCCCGTGGCGCCTGTCAT
TTGCCCGCAGTACGAGGACGATGGGTGCTGCAGCTGGCAGCAGAATTACG
CTCTGTACCAGAACCTAAGGACGCTCGTCGACAGCTTCGGTTCCTCTACG
GGATGTCTGGCCTGCGCGGTTAACCTGGTAAACTTCTGGTGTGCTCTTGT
TTGCTCCCCTGACCAAGGCGCATTCGTTACGTTGCACGATCCGCCGTATG
CTGAGGCGAGTCTTCGGTTCCTCTACGGGATGTCTGGCCTGCGCGGTTAA
CCTGGTAAACTTCTGGTGTGCTCTTGTTTGCTCCCCTGACCAAGGCGCAT
TCGTTACGTTGCACGATCCGCCGTATGCTGAGGCGAGTAGGGCAGACGAC
CTTACAGGTGGCTCCGGAACAGTCCTCCAGGCAGACGTCGTTGTCGATGG
AGATCTAGCATGCCGGATCTACGAGTCATGCAGAAGCGTGGCTATTGTCG
GAGAGACTACAGGAATGCAGTCCGGACTGAGGGCAGACGACCTTACAGGT
GGCTCCGGAACAGTCCTCCAGGCAGACGTCGTTGTCGATGGAGATCTAGC
ATGCCGGATCTACGAGTCATGCAGAAGCGTGGCTATTGTCGGAGAGACTA
CAGGAATGCAGTCCGGACTGGGCCTCCTAAAGTTCCAGATGCAAACAGGT
GCGGTAGGCCACGGAGAGTACTTCTTCCTTTCATTTGGGCCTCCTAAAGT
TCCAGATGCAAACAGGTGCGGTAGGCCACGGAGAGTACTTCTTCCTTTCA
TTTGCCAACGCAACCTCAGACTCTGCAAAGAGAGATGCGCGGTTGCAGTG
GGATATGTCTACTCTTGACACCCACGCCAACATTATCAGCCGAGGCGCCC
CTGTCCCAACATTATCAGCATTTTCAAAAGCAAAAGAGGATCACAATGGC
GGATCTGCCCTGGCCCTCGAGACTCTGTCGTGCGAGTCATTCTACAATCC
TGGAACCAAGAATGTTCCCTTCGCGTATCCTCCTCCAACAAAAGACATAG
ATTCTTGCAGGCAAGACCATCCAACGCAACCTCAGACTCTGCAAAGAGAG
ATGCGCGGTTGCAGTGGGATATGTCTACTCTTGACACCCACGCCAACATT
ATCAGCCGAGGCGCCCCTGTCCCAACATTATCAGCATTTTCAAAAGCAAA
AGAGGATCACAATGGCGGATCTGCCCTGGCCCTCGAGACTCTGTCGTGCG
AGTCATTCTACAATCCTGGAACCAAGAATGTTCCCTTCGCGTATCCTCCT
CCAACAAAAGACATAGATTCTTGCAGGCAAGACCAT
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