mRNA_H-elongata_contig47929.11929.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig47929.11929.1 vs. uniprot
Match: D7FMI8_ECTSI (NPC1_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMI8_ECTSI) HSP 1 Score: 411 bits (1057), Expect = 2.300e-140 Identity = 200/308 (64.94%), Postives = 242/308 (78.57%), Query Frame = 1
Query: 1 CFQAGVDTECTPEQAK-DGALSFPLDSAHGFGVLHDKVWDGSVENPSTGLCRRGTPDEEGRCMVDFVAPKGLDPVAPVICPQYEDDGCCSWQQNYALYQNLRTLVDSFGSSTGCLACAVNLVNFWCALVCSPDQGAFVTLHDPPYAEASRADDLTGGSGTVLQADVVVDGDLACRIYESCRSVAIVGETTGMQSGLGLLKFQMQTGAVGHGEYFFLSF-ANATSDSAKRDARLQWDMSTLDTHANIISRGAPVPTLSAFSKAKEDHNGGSALALETLSCESFYNPGTKNVPFAYPPPTKDIDSCRQDH 918
CFQ G+DT+CTP A+ D A+SFP+DS+HGFGV HDKVWDGSVENPSTGLC G PD +GRC+VDFVAPKGL VAP++CPQY+D GCCSWQQNYALYQNL LV+SFGS+TGCLACAVNLVNFWCALVCSPDQGAF ++HDPP+ + R DDLTGGS VLQ DV VDGD+ACRIYESC+S+A+VGETT MQSGLGLLKFQ+QTGAVGHGE+FF SF NA+++S + RL LD A + P SA + + E S+++ +TL+C+SF++PG+ +PFAYPP +DI SC D+
Sbjct: 48 CFQFGLDTDCTPIPAEGDTAVSFPMDSSHGFGVFHDKVWDGSVENPSTGLCDEGRPDSDGRCIVDFVAPKGLKDVAPIVCPQYKDSGCCSWQQNYALYQNLGLLVESFGSTTGCLACAVNLVNFWCALVCSPDQGAFASMHDPPFDQ--RRDDLTGGSSRVLQLDVNVDGDMACRIYESCKSIAVVGETTAMQSGLGLLKFQLQTGAVGHGEFFFPSFETNASAESPCGNKRLPVS-GGLDVRATE-RKDDPQAAASAPTASSES----SSMSFDTLACDSFFDPGSSTIPFAYPPKREDIISCTCDY 347
BLAST of mRNA_H-elongata_contig47929.11929.1 vs. uniprot
Match: A0A835YTW9_9STRA (NPC1_N domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTW9_9STRA) HSP 1 Score: 321 bits (823), Expect = 1.250e-105 Identity = 161/308 (52.27%), Postives = 204/308 (66.23%), Query Frame = 1
Query: 1 CFQAGVDTECTPEQAKDGALS--FPLDSAHGFGVLHDKVWDGSVENPSTGLCRRGTPDEEGRCMVDFVAPKGLDPVAPVICPQYEDDGCCSWQQNYALYQNLRTLVDSFGSSTGCLACAVNLVNFWCALVCSPDQGAFVTLHDPPYAEASRADDLTGGSGT-VLQADVVVDGDLACRIYESCRSVAIVGETTGMQSGLGLLKFQMQTGAVGHGEYFFLSFANATSDSAKR--DARLQWDM-STLDTHANIISRGAPVPTLSAFSKAKEDHNGGSALALETLSCESFYNPGTKNVPFAYPPPTKDIDSC 906
CFQ GVDT CTP + D S FP+++AHGF V HD +WDGS+ + S+GLC RG PD +GRC+ + A L VAP++CPQY GCC+WQQNYAL+QNLRTLVDSFG +TGCLACA NLVN WCALVCSP QG++VTLHDPP A DDLTG + VLQADVV+D D AC ++ESC + AI G +T MQS +GLL+FQ+QTGA+GHGEYF+L+F + +A R D R + D + + AP P S F + L C+S++ PG+ + PF YPPP + + SC
Sbjct: 17 CFQNGVDTACTPREYTDRESSAPFPMNAAHGFNVAHDTIWDGSMADASSGLCARGRPDVQGRCIQSWDA--SLAAVAPIMCPQYAGAGCCTWQQNYALFQNLRTLVDSFGGATGCLACAANLVNLWCALVCSPQQGSYVTLHDPP--RALMDDDLTGAAQLPVLQADVVLDADYACAVFESCSATAIAGASTAMQSAVGLLQFQLQTGAIGHGEYFYLAFDGRAAPNATRSHDVRCPHQLVQREDAEQSTQALPAPEPQYSGFK-------------TDVLQCDSYWYPGSDSPPFPYPPPQQTLTSC 307
BLAST of mRNA_H-elongata_contig47929.11929.1 vs. uniprot
Match: A0A6H5KYY4_9PHAE (NPC1_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYY4_9PHAE) HSP 1 Score: 261 bits (668), Expect = 8.880e-83 Identity = 114/150 (76.00%), Postives = 131/150 (87.33%), Query Frame = 1
Query: 1 CFQAGVDTECTPEQAK-DGALSFPLDSAHGFGVLHDKVWDGSVENPSTGLCRRGTPDEEGRCMVDFVAPKGLDPVAPVICPQYEDDGCCSWQQNYALYQNLRTLVDSFGSSTGCLACAVNLVNFWCALVCSPDQGAFVTLHDPPYAEASR 447
CFQ G+DT+CTP A+ D A+SFP+DS+HGFGV HDKVWDGSVE+PSTGLC G PD +GRC+VDFVAPKGL VAP+ICPQY+D GCCSWQQNYALYQNL LV+SFGS+TGCLACAVNLVNFWCALVCSPDQGAF ++HDPP+ +A
Sbjct: 163 CFQFGLDTDCTPIPAEGDTAVSFPMDSSHGFGVFHDKVWDGSVEDPSTGLCDEGRPDSDGRCIVDFVAPKGLKDVAPIICPQYKDSGCCSWQQNYALYQNLGLLVESFGSTTGCLACAVNLVNFWCALVCSPDQGAFASMHDPPFDQAKE 312
BLAST of mRNA_H-elongata_contig47929.11929.1 vs. uniprot
Match: K3X0G1_GLOUD (NPC1_N domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X0G1_GLOUD) HSP 1 Score: 160 bits (404), Expect = 8.380e-43 Identity = 93/255 (36.47%), Postives = 128/255 (50.20%), Query Frame = 1
Query: 28 CTPEQAKDGALSFPLDSAHGFGVLHDKVWDGSVENPSTGLCRRGTPDEEGRCMVDFVAPKGLDPVAPVICPQYEDDGCCSWQQNYALYQNLRTLVDSFGSSTG--CLACAVNLVNFWCALVCSPDQGAFVTLHDPPYAEASRADDLTGGSGT-VLQADVVVDGDLACRIYESCRSVAIVGETTGMQSGLGLLKFQMQTGAVGHGEYFFLSF--ANATSDSAKRDAR-------------LQWDMSTLDTHANIIS 738
C PE A P+ A V G + S G C G C+ D + + + CP+Y+D CCSWQQN A+ +N + L ++F ++ G C ACAVNL+N WC L+CSP Q F+ +H P + R D +TG VL+ DV +D C +Y+SC++ AI GM+S LG L +QMQTGA+GHGEY L F AN T+ + DA D+ TL T A ++S
Sbjct: 48 CIPEAHAVPADPQPMRGASWANVTGGGACKGDSDCNSKGSCTNGAC----ACLNDGIVAGAHCELFAIQCPEYKDAACCSWQQNQAMAENFKVLANTFANNDGGGCDACAVNLLNLWCGLMCSPHQADFMRMHLPFPSINHRLDPMTGEENVKVLEMDVTLDKPFTCALYDSCKNTAIASVAEGMKSSLGFLNYQMQTGAIGHGEYMLLHFTSANTTTKATSADAFDHHVFKCSNYSEVTTMDIETLPTQAQLLS 298
BLAST of mRNA_H-elongata_contig47929.11929.1 vs. uniprot
Match: H3H0H3_PHYRM (NPC1_N domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H0H3_PHYRM) HSP 1 Score: 147 bits (371), Expect = 6.370e-39 Identity = 83/240 (34.58%), Postives = 119/240 (49.58%), Query Frame = 1
Query: 25 ECTPEQAKDGALSFPLDSAHGFGVLHDKVWDGSVENPSTGLCRRGTPDEEGRCMVDFVAPKGLDPVAPVICPQYEDDGCCSWQQNYALYQNLRTLVDSFG--SSTGCLACAVNLVNFWCALVCSPDQGAFVTLHDPPYAEASRADDLTGGSGT-VLQADVVVDGDLACRIYESCRSVAIVGETTGMQSGLGLLKFQMQTGAVGHGEYFFLSFANATSDSAKRDARLQWDMSTLDTHANII 735
EC PE K A P+ + + + G C G C D +A + CP Y+DD CCSWQQN A+ +N + + F S+ GC ACA NL+N WC LVCSP+Q F+ + P + R D +TG VL+ DV +D D C +++SC++ A+ M+S LG L +QMQ GAVGHGEY L F +A +DA + D+ ++ ++
Sbjct: 40 ECIPEAHKQPAEPQPMTGDGWPSTIGGGSCTNATDCYGKGQCINGACV----CRQDGMAAGPHCNQFAIQCPAYKDDACCSWQQNQAMAENFKLVASVFAKNSAGGCDACAANLMNLWCGLVCSPEQDQFMQMAHPWPSTNYRPDPMTGKEKVKVLELDVALDKDFTCAVFDSCKNTAMASMAAAMKSSLGFLNYQMQVGAVGHGEYISLKF------NASKDASFEHDVLKCSNYSEVV 269
BLAST of mRNA_H-elongata_contig47929.11929.1 vs. uniprot
Match: A0A8K1CL61_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CL61_PYTOL) HSP 1 Score: 148 bits (373), Expect = 2.260e-38 Identity = 89/227 (39.21%), Postives = 120/227 (52.86%), Query Frame = 1
Query: 28 CTPEQAKDGALSFPLDSAHGFGVLHDKVWDGSV----ENPSTGLCRRGTPDEEGRCMVD-FVAPKGLDPVAPVICPQYEDDGCCSWQQNYALYQNLRTLVDSFGSST--GCLACAVNLVNFWCALVCSPDQGAFVTLHDPPYAEASRADDLTGGSGT-VLQADVVVDGDLACRIYESCRSVAIVGETTGMQSGLGLLKFQMQTGAVGHGEYFFLSFANATSDSAKRD 684
C PE A P+D G V G + + G C RG C VD A D A + CP+Y+D CCSWQQN AL QN + + FG ++ GC ACA NL+ WC ++CSP Q F+ +H P + + R D +TG VL+ DV + D C +++SC++ AI + M+S LG L +QMQTGA+GHGEY L F NATS++ D
Sbjct: 46 CIPE-----ANPMPVDPKPMTGAGWANVTGGGACTTDKECNKGACVRGNCV----CQVDGMTAGAHCDDFA-IQCPEYKDAACCSWQQNQALAQNFKLVTTIFGKNSVGGCDACATNLLELWCGMICSPRQSEFMKMHLPYPSNSYRPDPMTGKDHVKVLEMDVTLAKDFTCAVFDSCKNTAIASVSEAMKSSLGFLNYQMQTGAIGHGEYMHLHF-NATSNATAFD 261
BLAST of mRNA_H-elongata_contig47929.11929.1 vs. uniprot
Match: A0A662XWU5_9STRA (NPC1_N domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XWU5_9STRA) HSP 1 Score: 142 bits (357), Expect = 5.200e-37 Identity = 69/152 (45.39%), Postives = 96/152 (63.16%), Query Frame = 1
Query: 229 VICPQYEDDGCCSWQQNYALYQNLRTLVDSFG--SSTGCLACAVNLVNFWCALVCSPDQGAFVTLHDPPYAEASRADDLTGGSGT-VLQADVVVDGDLACRIYESCRSVAIVGETTGMQSGLGLLKFQMQTGAVGHGEYFFLSFANATSDSA 675
+ CP Y+DD CCSWQQN A+ +N + + F S+ GC ACA NL+N WC LVCSP Q F+ L P + R D +TG VL+ DV +D D C +++SC++ A+ M+S LG L +QMQ GAVGHGE+ L+F NA++D++
Sbjct: 12 IQCPAYKDDACCSWQQNRAMAENFQLVASVFARNSAGGCDACAANLMNLWCGLVCSPAQDQFMQLAHPWPSTTYRPDPMTGKERVKVLELDVALDKDFTCAVFDSCKNTAMASMAAAMKSSLGFLNYQMQVGAVGHGEFITLAF-NASADAS 162
BLAST of mRNA_H-elongata_contig47929.11929.1 vs. uniprot
Match: M4C709_HYAAE (NPC1_N domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C709_HYAAE) HSP 1 Score: 134 bits (338), Expect = 4.370e-35 Identity = 73/182 (40.11%), Postives = 102/182 (56.04%), Query Frame = 1
Query: 229 VICPQYEDDGCCSWQQNYALYQNLRTLVDSFGSST--GCLACAVNLVNFWCALVCSPDQGAFVTLHDPPYAEASRADDLTGGSGT-VLQADVVVDGDLACRIYESCRSVAIVGETTGMQSGLGLLKFQMQTGAVGHGEYFFLSFANATSDSAKRDARLQWDMSTLD--THANIISRGAPVPT 759
+ CP Y CCSWQQN A+ +N + L F ++ GC ACA NL+ WC LVCSP+Q F+ L + R D LTG VL+ V +D D C I++SC++ A+ M+S +G L +QMQ GAVGHGEY L F NA+ D + +D S L+ ++ I++R +PT
Sbjct: 12 IQCPMYMASACCSWQQNEAMAENFKLLASVFAKNSVGGCDACAANLMELWCGLVCSPEQDEFMQLAHAWPSTTFRPDPLTGNERVKVLELFVALDKDFTCAIFDSCKNTAMASMAAAMKSSIGFLNYQMQVGAVGHGEYMTLHF-NASKDKS-------FDSSVLNCSNYSEIVTRRETLPT 185
BLAST of mRNA_H-elongata_contig47929.11929.1 vs. uniprot
Match: A0A024U1M0_9STRA (NPC1_N domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U1M0_9STRA) HSP 1 Score: 138 bits (347), Expect = 6.380e-35 Identity = 68/177 (38.42%), Postives = 100/177 (56.50%), Query Frame = 1
Query: 142 GLCRRGTPDEEGRCMVDFVAPKGLDPVAPVICPQYEDDGCCSWQQNYALYQNLRTLVDSFGSSTG-CLACAVNLVNFWCALVCSPDQGAFVTLHDPPYAEASRADDLTGGSGT-VLQADVVVDGDLACRIYESCRSVAIVGETTGMQSGLGLLKFQMQTGAVGHGEYFFLSFANATS 666
G C +G C+ A D A + CP+Y+DD CCSWQQN AL N + + FGS G C ACAVN++ WC LVCSP Q F+ +H P + + R D +TG VL+ +V + C +++SC++ +V T ++S +G L +Q QTG++GHG++ +L F S
Sbjct: 43 GACSTDADCHKGTCVDGVTAGAHCDDFA-IQCPEYKDDACCSWQQNRALAANFKLISSFFGSDGGGCDACAVNIMQLWCGLVCSPFQADFMQMHMPYPSNSFRLDPMTGVDHVKVLEMNVSLSTPFTCGLFDSCKNTPLVSVTDALKSSVGFLNYQAQTGSIGHGQFMYLQFGRNAS 218
BLAST of mRNA_H-elongata_contig47929.11929.1 vs. uniprot
Match: A0A2D4C7W7_PYTIN (NPC1_N domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C7W7_PYTIN) HSP 1 Score: 137 bits (346), Expect = 1.190e-34 Identity = 76/209 (36.36%), Postives = 114/209 (54.55%), Query Frame = 1
Query: 229 VICPQYEDDGCCSWQQNYALYQNLRTLVDSFGSSTG--CLACAVNLVNFWCALVCSPDQGAFVTLHDPPYAEASRADDLTGGSGT-VLQADVVVDGDLACRIYESCRSVAIVGETTGMQSGLGLLKFQMQTGAVGHGEYFFLSFANATSDSAKRDAR-LQWD--MSTLDTHANIISRGAPVPTLSAFSKAKEDHNGGSALALETLSCES 837
+ CP+++D CC+WQQN + QN + L FG + G C ACA NL+ WC LVCSP Q F+ +H P + R D +T VL+ DV + C +++SC++ AI + M+S LG L +Q QTGA+GHGEY +L F NATS++ D L+ D A++ ++ +P++++ AKE G + S S
Sbjct: 81 IQCPEHKDAACCTWQQNEGIAQNFKLLASVFGQNDGGGCDACAANLMQLWCGLVCSPRQDEFMKMHLPYPSINHRKDPMTDKDNVKVLELDVTLSKSFTCALFDSCKNTAIASVSEAMKSSLGFLNYQAQTGAIGHGEYMYLHF-NATSNATAFDHHVLKCDNYSEVTSLKASLPAQAQQLPSIASPDAAKECPCGACRATCDAHSSSS 288 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47929.11929.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 24
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig47929.11929.1 >prot_H-elongata_contig47929.11929.1 ID=prot_H-elongata_contig47929.11929.1|Name=mRNA_H-elongata_contig47929.11929.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=306bp CFQAGVDTECTPEQAKDGALSFPLDSAHGFGVLHDKVWDGSVENPSTGLCback to top mRNA from alignment at H-elongata_contig47929:184..3990- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig47929.11929.1 ID=mRNA_H-elongata_contig47929.11929.1|Name=mRNA_H-elongata_contig47929.11929.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3807bp|location=Sequence derived from alignment at H-elongata_contig47929:184..3990- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig47929:184..3990- >mRNA_H-elongata_contig47929.11929.1 ID=mRNA_H-elongata_contig47929.11929.1|Name=mRNA_H-elongata_contig47929.11929.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1836bp|location=Sequence derived from alignment at H-elongata_contig47929:184..3990- (Himanthalia elongata Himel1 dioecious)back to top |