mRNA_H-elongata_contig47912.11927.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig47912.11927.1
Unique NamemRNA_H-elongata_contig47912.11927.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig47912.11927.1 vs. uniprot
Match: D7FMK5_ECTSI (Dynein-1-alpha heavy chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMK5_ECTSI)

HSP 1 Score: 181 bits (460), Expect = 5.390e-51
Identity = 91/101 (90.10%), Postives = 97/101 (96.04%), Query Frame = 1 
Query:    1 MAEIEFWRRRSSSLSALYEQINMPKVQKMLKIMDEVEAPILPTFNYHFSELSRLYIEAKDNVKFLTTLERHFKNINNTQGSFRVILDTLPSMMNAIRMVWV 303
            MAEIEFWRRR++SLSALYEQINMPKVQ+MLK+MDEVEAP+LPTFNYHFSELSRLYIEAKDNVKFLTTLERHFKNI+  QGSF V LDTLPSMMNAIRMVWV
Sbjct:  296 MAEIEFWRRRNASLSALYEQINMPKVQRMLKVMDEVEAPMLPTFNYHFSELSRLYIEAKDNVKFLTTLERHFKNIS--QGSFGVTLDTLPSMMNAIRMVWV 394
[Close]
BLAST of mRNA_H-elongata_contig47912.11927.1 vs. uniprot
Match: A0A8K1C6K4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C6K4_PYTOL)

HSP 1 Score: 153 bits (386), Expect = 5.000e-41
Identity = 75/101 (74.26%), Postives = 87/101 (86.14%), Query Frame = 1 
Query:    1 MAEIEFWRRRSSSLSALYEQINMPKVQKMLKIMDEVEAPILPTFNYHFSELSRLYIEAKDNVKFLTTLERHFKNINNTQGSFRVILDTLPSMMNAIRMVWV 303
            +AEIEFWR R+++LS +YEQINMP VQKM+K+++ VEA +L TF YHFSELS+LYIEAKDNVKFLTTLERHFKNI    GSF  I DTLPSMMNAIRMVW+
Sbjct:  349 LAEIEFWRERNATLSTIYEQINMPHVQKMIKLLELVEASMLLTFKYHFSELSKLYIEAKDNVKFLTTLERHFKNI--ASGSFNTIADTLPSMMNAIRMVWI 447
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BLAST of mRNA_H-elongata_contig47912.11927.1 vs. uniprot
Match: A0A662WMP9_9STRA (UDENN domain-containing protein n=5 Tax=Peronosporaceae TaxID=4777 RepID=A0A662WMP9_9STRA)

HSP 1 Score: 152 bits (383), Expect = 1.290e-40
Identity = 75/101 (74.26%), Postives = 87/101 (86.14%), Query Frame = 1 
Query:    1 MAEIEFWRRRSSSLSALYEQINMPKVQKMLKIMDEVEAPILPTFNYHFSELSRLYIEAKDNVKFLTTLERHFKNINNTQGSFRVILDTLPSMMNAIRMVWV 303
            +AEIEFWR R+++LS ++EQINMP VQKMLK+++ VEA +L TF YHFSELS+LYIEAKDNVKFLTTLERHFKNI    GSF  I DTLPSMMNAIRMVW+
Sbjct:  320 LAEIEFWRERNATLSTIFEQINMPTVQKMLKLLELVEASMLLTFKYHFSELSKLYIEAKDNVKFLTTLERHFKNI--ASGSFATIADTLPSMMNAIRMVWI 418
[Close]
BLAST of mRNA_H-elongata_contig47912.11927.1 vs. uniprot
Match: W2PCB2_PHYPN (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2PCB2_PHYPN)

HSP 1 Score: 151 bits (382), Expect = 1.740e-40
Identity = 74/101 (73.27%), Postives = 87/101 (86.14%), Query Frame = 1 
Query:    1 MAEIEFWRRRSSSLSALYEQINMPKVQKMLKIMDEVEAPILPTFNYHFSELSRLYIEAKDNVKFLTTLERHFKNINNTQGSFRVILDTLPSMMNAIRMVWV 303
            +AEIEFWR R+++LS ++EQINMP VQKMLK+++ VEA +L TF YHFSELS+LY+EAKDNVKFLTTLERHFKNI    GSF  I DTLPSMMNAIRMVW+
Sbjct:  268 LAEIEFWRERNATLSTIFEQINMPTVQKMLKLLELVEASMLLTFKYHFSELSKLYVEAKDNVKFLTTLERHFKNI--ASGSFSAIADTLPSMMNAIRMVWI 366
[Close]
BLAST of mRNA_H-elongata_contig47912.11927.1 vs. uniprot
Match: A0A6G0NFF5_9STRA (Dynein-1-alpha heavy chain, flagellar inner arm I1 complex n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0NFF5_9STRA)

HSP 1 Score: 151 bits (382), Expect = 1.750e-40
Identity = 74/101 (73.27%), Postives = 87/101 (86.14%), Query Frame = 1 
Query:    1 MAEIEFWRRRSSSLSALYEQINMPKVQKMLKIMDEVEAPILPTFNYHFSELSRLYIEAKDNVKFLTTLERHFKNINNTQGSFRVILDTLPSMMNAIRMVWV 303
            +AEIEFWR R+++LS ++EQINMP VQKMLK+++ VEA +L TF YHFSELS+LY+EAKDNVKFLTTLERHFKNI    GSF  I DTLPSMMNAIRMVW+
Sbjct:  323 LAEIEFWRERNATLSTIFEQINMPTVQKMLKLLELVEASMLLTFKYHFSELSKLYVEAKDNVKFLTTLERHFKNI--ASGSFSAIADTLPSMMNAIRMVWI 421
[Close]
BLAST of mRNA_H-elongata_contig47912.11927.1 vs. uniprot
Match: W2RHC9_PHYPN (Uncharacterized protein n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2RHC9_PHYPN)

HSP 1 Score: 151 bits (382), Expect = 1.750e-40
Identity = 74/101 (73.27%), Postives = 87/101 (86.14%), Query Frame = 1 
Query:    1 MAEIEFWRRRSSSLSALYEQINMPKVQKMLKIMDEVEAPILPTFNYHFSELSRLYIEAKDNVKFLTTLERHFKNINNTQGSFRVILDTLPSMMNAIRMVWV 303
            +AEIEFWR R+++LS ++EQINMP VQKMLK+++ VEA +L TF YHFSELS+LY+EAKDNVKFLTTLERHFKNI    GSF  I DTLPSMMNAIRMVW+
Sbjct:  323 LAEIEFWRERNATLSTIFEQINMPTVQKMLKLLELVEASMLLTFKYHFSELSKLYVEAKDNVKFLTTLERHFKNI--ASGSFSAIADTLPSMMNAIRMVWI 421
[Close]
BLAST of mRNA_H-elongata_contig47912.11927.1 vs. uniprot
Match: H3G8E7_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G8E7_PHYRM)

HSP 1 Score: 151 bits (382), Expect = 1.760e-40
Identity = 74/101 (73.27%), Postives = 87/101 (86.14%), Query Frame = 1 
Query:    1 MAEIEFWRRRSSSLSALYEQINMPKVQKMLKIMDEVEAPILPTFNYHFSELSRLYIEAKDNVKFLTTLERHFKNINNTQGSFRVILDTLPSMMNAIRMVWV 303
            +AEIEFWR R+++LS ++EQINMP VQKMLK+++ VEA +L TF YHFSELS+LY+EAKDNVKFLTTLERHFKNI    GSF  I DTLPSMMNAIRMVW+
Sbjct:  154 LAEIEFWRERNATLSTIFEQINMPAVQKMLKLLELVEASMLLTFKYHFSELSKLYVEAKDNVKFLTTLERHFKNI--ASGSFSTIADTLPSMMNAIRMVWI 252
[Close]
BLAST of mRNA_H-elongata_contig47912.11927.1 vs. uniprot
Match: D0MTX3_PHYIT (Dynein heavy chain n=15 Tax=Phytophthora TaxID=4783 RepID=D0MTX3_PHYIT)

HSP 1 Score: 151 bits (382), Expect = 1.760e-40
Identity = 74/101 (73.27%), Postives = 87/101 (86.14%), Query Frame = 1 
Query:    1 MAEIEFWRRRSSSLSALYEQINMPKVQKMLKIMDEVEAPILPTFNYHFSELSRLYIEAKDNVKFLTTLERHFKNINNTQGSFRVILDTLPSMMNAIRMVWV 303
            +AEIEFWR R+++LS ++EQINMP VQKMLK+++ VEA +L TF YHFSELS+LY+EAKDNVKFLTTLERHFKNI    GSF  I DTLPSMMNAIRMVW+
Sbjct:  323 LAEIEFWRERNATLSTIFEQINMPTVQKMLKLLELVEASMLLTFKYHFSELSKLYVEAKDNVKFLTTLERHFKNI--ASGSFSAIADTLPSMMNAIRMVWI 421
[Close]
BLAST of mRNA_H-elongata_contig47912.11927.1 vs. uniprot
Match: A0A397F791_9STRA (DHC_N1 domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397F791_9STRA)

HSP 1 Score: 150 bits (380), Expect = 3.190e-40
Identity = 74/101 (73.27%), Postives = 86/101 (85.15%), Query Frame = 1 
Query:    1 MAEIEFWRRRSSSLSALYEQINMPKVQKMLKIMDEVEAPILPTFNYHFSELSRLYIEAKDNVKFLTTLERHFKNINNTQGSFRVILDTLPSMMNAIRMVWV 303
            +AEIEFWR R+++LS ++EQINMP VQKML +++ VEA +L TF YHFSELS+LYIEAKDNVKFLTTLERHFKNI    GSF  I DTLPSMMNAIRMVW+
Sbjct:  295 LAEIEFWRERNATLSTIFEQINMPNVQKMLALLELVEASMLSTFRYHFSELSKLYIEAKDNVKFLTTLERHFKNI--ASGSFSTIADTLPSMMNAIRMVWI 393
[Close]
BLAST of mRNA_H-elongata_contig47912.11927.1 vs. uniprot
Match: A0A6A5AQN2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AQN2_9STRA)

HSP 1 Score: 150 bits (380), Expect = 3.240e-40
Identity = 74/101 (73.27%), Postives = 86/101 (85.15%), Query Frame = 1 
Query:    1 MAEIEFWRRRSSSLSALYEQINMPKVQKMLKIMDEVEAPILPTFNYHFSELSRLYIEAKDNVKFLTTLERHFKNINNTQGSFRVILDTLPSMMNAIRMVWV 303
            +AEIEFWR R+++LS ++EQINMP VQKML +++ VEA +L TF YHFSELS+LYIEAKDNVKFLTTLERHFKNI    GSF  I DTLPSMMNAIRMVW+
Sbjct:  369 LAEIEFWRERNATLSTIFEQINMPNVQKMLALLELVEASMLSTFRYHFSELSKLYIEAKDNVKFLTTLERHFKNI--ASGSFSTIADTLPSMMNAIRMVWI 467
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47912.11927.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMK5_ECTSI5.390e-5190.10Dynein-1-alpha heavy chain n=2 Tax=Ectocarpus TaxI... [more]
A0A8K1C6K4_PYTOL5.000e-4174.26Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A662WMP9_9STRA1.290e-4074.26UDENN domain-containing protein n=5 Tax=Peronospor... [more]
W2PCB2_PHYPN1.740e-4073.27Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
A0A6G0NFF5_9STRA1.750e-4073.27Dynein-1-alpha heavy chain, flagellar inner arm I1... [more]
W2RHC9_PHYPN1.750e-4073.27Uncharacterized protein n=1 Tax=Phytophthora paras... [more]
H3G8E7_PHYRM1.760e-4073.27Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
D0MTX3_PHYIT1.760e-4073.27Dynein heavy chain n=15 Tax=Phytophthora TaxID=478... [more]
A0A397F791_9STRA3.190e-4073.27DHC_N1 domain-containing protein (Fragment) n=1 Ta... [more]
A0A6A5AQN2_9STRA3.240e-4073.27Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig47912contigH-elongata_contig47912:1517..2455 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score182.2
Seed ortholog evalue1.2e-43
Seed eggNOG ortholog2880.D7FMK5
Preferred nameDNAH10
KEGG koko:K10408
KEGG Pathwayko05016,map05016
GOsGO:0000226,GO:0001539,GO:0001578,GO:0003341,GO:0003674,GO:0003774,GO:0003777,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005858,GO:0005875,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0008017,GO:0008092,GO:0008150,GO:0008569,GO:0009987,GO:0015630,GO:0015631,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022607,GO:0030030,GO:0030031,GO:0030286,GO:0031514,GO:0032838,GO:0032991,GO:0034622,GO:0035082,GO:0036156,GO:0036159,GO:0040011,GO:0042623,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044463,GO:0044464,GO:0044782,GO:0045503,GO:0045505,GO:0048870,GO:0051179,GO:0051674,GO:0051959,GO:0060271,GO:0060285,GO:0060294,GO:0065003,GO:0070286,GO:0070925,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1902494,GO:1990939
EggNOG free text desc.dynein light chain binding
EggNOG OGsCOG5245@1,KOG3595@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Hectar predicted targeting categoryother localisation
Exons3
Model size305
Cds size303
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig47912.11927.1prot_H-elongata_contig47912.11927.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig47912 1517..2455 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930790.280105-CDS-H-elongata_contig47912:1516..16311622930790.280105-CDS-H-elongata_contig47912:1516..1631Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47912 1517..1631 -
1691679571.408109-CDS-H-elongata_contig47912:1516..16311691679571.408109-CDS-H-elongata_contig47912:1516..1631Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47912 1517..1631 -
1622930790.2927794-CDS-H-elongata_contig47912:1825..19381622930790.2927794-CDS-H-elongata_contig47912:1825..1938Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47912 1826..1938 -
1691679571.4183116-CDS-H-elongata_contig47912:1825..19381691679571.4183116-CDS-H-elongata_contig47912:1825..1938Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47912 1826..1938 -
1622930790.3085155-CDS-H-elongata_contig47912:2380..24551622930790.3085155-CDS-H-elongata_contig47912:2380..2455Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47912 2381..2455 -
1691679571.4258764-CDS-H-elongata_contig47912:2380..24551691679571.4258764-CDS-H-elongata_contig47912:2380..2455Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47912 2381..2455 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig47912.11927.1

>prot_H-elongata_contig47912.11927.1 ID=prot_H-elongata_contig47912.11927.1|Name=mRNA_H-elongata_contig47912.11927.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
MAEIEFWRRRSSSLSALYEQINMPKVQKMLKIMDEVEAPILPTFNYHFSE
LSRLYIEAKDNVKFLTTLERHFKNINNTQGSFRVILDTLPSMMNAIRMVW
V
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mRNA from alignment at H-elongata_contig47912:1517..2455-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig47912.11927.1 ID=mRNA_H-elongata_contig47912.11927.1|Name=mRNA_H-elongata_contig47912.11927.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=939bp|location=Sequence derived from alignment at H-elongata_contig47912:1517..2455- (Himanthalia elongata Himel1 dioecious)
ATGGCCGAGATCGAATTCTGGCGCCGCAGAAGTTCCTCCCTCAGCGCCCT
GTATGAGCAAATCAATATGCCCAAGGTAATTGTCCAACATACAACATAAA
AATGAATAAAGCGTTTTGGCCCAACGAACTCCGTATCTACGTCGAGAAGA
GAAGGTACGAGTACGGTACTTGTTGCGTTCATTTCAGCGGCACGTTTCGA
CTGACAAGCTACTTTCCTATGGTAAGCTTTCTCTTTACATAGGAGTGATG
CCGCGGTAGGTCCGATGTGTCGAGGATGCAAACATGGAGTATCACACGAA
GAGCTATCGGCATCGCTCGAGACGTGGACATGAACTACAGTACTTGCACT
TTCCTTCCCTTTTTTCCCTTTGATATATAGTATTATATATTTAGTTGTAT
TTATATTTTAAAACCTTGAACTCATTCGAACCCTTCGAACAGTTACGTAT
TCCGCTATATCTGATGACCATGCATTCCTTACTATAGTACTTACTGTTTC
TAACAATACCCTGAAAGGTCCAGAAGATGCTCAAGATTATGGATGAGGTT
GAAGCGCCCATACTACCTACATTTAATTACCATTTCTCAGAATTATCAAG
GCTGTACATCGAGGCCAAGGATAATGTCAAGTTAAGTGATATCTAGACGG
CTACTCATCCATCCACCCATCCGGCATGGGTTACGGGTCAGAGCTACCCA
CGTCAAATATCCGCTATGTCCGTTGCGTAGTATTAAATTAGAGAAATATT
TGTGGGATGCTTTCAGCGCATTCCCCACCTTACAGTATAATTGGTATCCC
TCTGGATACCGCATGCCTTCTCAGGTTTCTGACTACTCTGGAGCGTCACT
TCAAAAACATCAACAACACCCAGGGTTCCTTCAGGGTGATCCTGGACACC
CTACCTTCTATGATGAACGCCATTCGCATGGTATGGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig47912:1517..2455-

>mRNA_H-elongata_contig47912.11927.1 ID=mRNA_H-elongata_contig47912.11927.1|Name=mRNA_H-elongata_contig47912.11927.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig47912:1517..2455- (Himanthalia elongata Himel1 dioecious)
ATGGCCGAGATCGAATTCTGGCGCCGCAGAAGTTCCTCCCTCAGCGCCCT
GTATGAGCAAATCAATATGCCCAAGATGGCCGAGATCGAATTCTGGCGCC
GCAGAAGTTCCTCCCTCAGCGCCCTGTATGAGCAAATCAATATGCCCAAG
GTCCAGAAGATGCTCAAGATTATGGATGAGGTTGAAGCGCCCATACTACC
TACATTTAATTACCATTTCTCAGAATTATCAAGGCTGTACATCGAGGCCA
AGGATAATGTCAAGTCCAGAAGATGCTCAAGATTATGGATGAGGTTGAAG
CGCCCATACTACCTACATTTAATTACCATTTCTCAGAATTATCAAGGCTG
TACATCGAGGCCAAGGATAATGTCAAGTTTCTGACTACTCTGGAGCGTCA
CTTCAAAAACATCAACAACACCCAGGGTTCCTTCAGGGTGATCCTGGACA
CCCTACCTTCTATGATGAACGCCATTCGCATGGTATGGGTGGTTTCTGAC
TACTCTGGAGCGTCACTTCAAAAACATCAACAACACCCAGGGTTCCTTCA
GGGTGATCCTGGACACCCTACCTTCTATGATGAACGCCATTCGCATGGTA
TGGGTG
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