mRNA_H-elongata_contig47893.11926.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig47893.11926.1
Unique NamemRNA_H-elongata_contig47893.11926.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47893.11926.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig47893contigH-elongata_contig47893:2572..3392 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size821
Cds size522
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig47893.11926.1prot_H-elongata_contig47893.11926.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig47893 2625..3146 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930790.2061038-UTR-H-elongata_contig47893:2571..26241622930790.2061038-UTR-H-elongata_contig47893:2571..2624Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47893 2572..2624 +
1691679571.375567-UTR-H-elongata_contig47893:2571..26241691679571.375567-UTR-H-elongata_contig47893:2571..2624Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47893 2572..2624 +
1622930790.237248-UTR-H-elongata_contig47893:3146..33921622930790.237248-UTR-H-elongata_contig47893:3146..3392Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47893 3147..3392 +
1691679571.3973007-UTR-H-elongata_contig47893:3146..33921691679571.3973007-UTR-H-elongata_contig47893:3146..3392Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47893 3147..3392 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930790.2207744-CDS-H-elongata_contig47893:2624..31461622930790.2207744-CDS-H-elongata_contig47893:2624..3146Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47893 2625..3146 +
1691679571.3890808-CDS-H-elongata_contig47893:2624..31461691679571.3890808-CDS-H-elongata_contig47893:2624..3146Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47893 2625..3146 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig47893.11926.1

>prot_H-elongata_contig47893.11926.1 ID=prot_H-elongata_contig47893.11926.1|Name=mRNA_H-elongata_contig47893.11926.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=174bp
MVNISAKRCAGDGCSKQASYGKAGSTKREYCDEHALERIVNISTKRCADD
GCFTHASYGKAGRTREYCAVHALEGMDNVSNTRCAGGGSFTESSNEKAGS
KKRGYSAKHALDGIECMVPNNSPSSKKRVPKNSSSPVSVSKICKTDNNIE
APFSDTALDVVLVKSEVPVIESK*
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mRNA from alignment at H-elongata_contig47893:2572..3392+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig47893.11926.1 ID=mRNA_H-elongata_contig47893.11926.1|Name=mRNA_H-elongata_contig47893.11926.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=821bp|location=Sequence derived from alignment at H-elongata_contig47893:2572..3392+ (Himanthalia elongata Himel1 dioecious)
TTAAGGCCGGGAGCACGAAGCGAGAGTACTGTGCTAAGCATGCCTTGGAG
GGGATGGTCAACATTTCGGCTAAACGGTGCGCCGGTGATGGATGCTCTAA
GCAAGCGAGCTACGGAAAGGCCGGGAGCACCAAGCGAGAGTACTGCGATG
AGCATGCCTTGGAAAGGATAGTCAATATTTCGACCAAAAGGTGCGCCGAT
GATGGATGTTTTACGCATGCGAGCTACGGAAAGGCCGGAAGGACAAGAGA
GTACTGCGCCGTGCATGCCTTAGAAGGAATGGACAATGTTTCGAACACTA
GGTGTGCCGGTGGTGGATCCTTTACGGAGTCGAGCAACGAAAAGGCCGGG
AGCAAGAAGCGGGGTTACTCCGCAAAACATGCTTTGGATGGTATCGAGTG
TATGGTCCCTAACAACAGCCCAAGTTCAAAGAAGCGGGTGCCAAAGAACT
CTTCATCGCCAGTATCCGTGTCCAAAATATGTAAAACCGATAATAACATT
GAAGCCCCCTTTTCCGATACTGCATTAGATGTTGTTTTGGTGAAGTCCGA
AGTACCAGTAATTGAATCGAAATAGGTGTATTTTGCAAAGCTTAGCTGAC
GGTCTACTGGCAGACGGAATCCCCAACATTGCGATCTGTCTATTTCATGT
CTTAAGATATTTTTTTTAGTATTATCAGCTGACCACGGACTGGAGCCCGA
ACAAATATTGTTCTTGATATTGGTTGCACGAAAAGGACGTTGATTAAAAT
GTCAGAGCTTTGCAACTAGTCGCGTACATAAAAGTAGTAGCTGGGTTATT
CAAGGAGAAATAAAAAGAGTC
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Coding sequence (CDS) from alignment at H-elongata_contig47893:2572..3392+

>mRNA_H-elongata_contig47893.11926.1 ID=mRNA_H-elongata_contig47893.11926.1|Name=mRNA_H-elongata_contig47893.11926.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1044bp|location=Sequence derived from alignment at H-elongata_contig47893:2572..3392+ (Himanthalia elongata Himel1 dioecious)
ATGGTCAACATTTCGGCTAAACGGTGCGCCGGTGATGGATGCTCTAAGCA
AGCGAGCTACGGAAAGGCCGGGAGCACCAAGCGAGAGTACTGCGATGAGC
ATGCCTTGGAAAGGATAGTCAATATTTCGACCAAAAGGTGCGCCGATGAT
GGATGTTTTACGCATGCGAGCTACGGAAAGGCCGGAAGGACAAGAGAGTA
CTGCGCCGTGCATGCCTTAGAAGGAATGGACAATGTTTCGAACACTAGGT
GTGCCGGTGGTGGATCCTTTACGGAGTCGAGCAACGAAAAGGCCGGGAGC
AAGAAGCGGGGTTACTCCGCAAAACATGCTTTGGATGGTATCGAGTGTAT
GGTCCCTAACAACAGCCCAAGTTCAAAGAAGCGGGTGCCAAAGAACTCTT
CATCGCCAGTATCCGTGTCCAAAATATGTAAAACCGATAATAACATTGAA
GCCCCCTTTTCCGATACTGCATTAGATGTTGTTTTGGTGAAGTCCGAAGT
ACCAGTAATTGAATCGAAATAGATGGTCAACATTTCGGCTAAACGGTGCG
CCGGTGATGGATGCTCTAAGCAAGCGAGCTACGGAAAGGCCGGGAGCACC
AAGCGAGAGTACTGCGATGAGCATGCCTTGGAAAGGATAGTCAATATTTC
GACCAAAAGGTGCGCCGATGATGGATGTTTTACGCATGCGAGCTACGGAA
AGGCCGGAAGGACAAGAGAGTACTGCGCCGTGCATGCCTTAGAAGGAATG
GACAATGTTTCGAACACTAGGTGTGCCGGTGGTGGATCCTTTACGGAGTC
GAGCAACGAAAAGGCCGGGAGCAAGAAGCGGGGTTACTCCGCAAAACATG
CTTTGGATGGTATCGAGTGTATGGTCCCTAACAACAGCCCAAGTTCAAAG
AAGCGGGTGCCAAAGAACTCTTCATCGCCAGTATCCGTGTCCAAAATATG
TAAAACCGATAATAACATTGAAGCCCCCTTTTCCGATACTGCATTAGATG
TTGTTTTGGTGAAGTCCGAAGTACCAGTAATTGAATCGAAATAG
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