mRNA_H-elongata_contig4785.11922.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig4785.11922.1
Unique NamemRNA_H-elongata_contig4785.11922.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig4785.11922.1 vs. uniprot
Match: D8LPM9_ECTSI (BRCT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPM9_ECTSI)

HSP 1 Score: 279 bits (713), Expect = 7.710e-75
Identity = 265/766 (34.60%), Postives = 312/766 (40.73%), Query Frame = 3 
Query: 1485 TPFYKAGDLVDVLSRSSPGVNKEGGVARVTRVNADGTYDVKYCVRHGTEKAVNPAIMSPYTLDDECDTVRANG------------------------GSDGNRGGERQALAPSPSAASVSVRRTHRRGSCPPDAAVGQANAACLNLILGDTQHPGLDLDPGLVEDLDPETRRQHSGNTLVGMEGGSVC-----------------------------------------------------------------------------------------VSGSNSAACGKGKGNSKERRDPRCDAKRKNVEEREDEKNKSAV--GSKQGVGG--------------------------------------------------------------------------------KRTR-----EGETGRRPAP--RDNASAVASXXXXXXXXXXXXXXDPR-----------RGRERRVV----------------LTLSSLTPEMVAVAESLAASHSWRIVPKYTEDVTHVVCGAAPRTNKANIRSAKFLRAVASGKWVVNEGWLQESQLRGEHVKEEAFELSGDRKSTVPSAPRRSRLAHAEPDRPGLFCGTTFHLRGHFGKD-SPPLCELEAMLLANGGTVVRTIGALFAQGGGGSSGSSGSGRRDSKGSCSSGTWRPPRVVIFQPSASSTKG---DVQTLARDLALHTIVGPSPGSEKVGRRDRAGGAKQEGDHV----EVVKPSWLVDSVGCFRVLQPTVVHRVP 3071
            TP +KAGDLV V SRSSPGVNKEGGVA+VT V  DGT DVKY V HG EK V   I+S Y +D                                  GS           APS    S  VRRT R+G C PD A GQA AACL+ +LG+TQHP LDLDP L E LDP      +G+   G  GG V                                                                                          VS        +G+G           +      E  +  + SA+  GS  G  G                                                                                KR R       E G RP    +  +    +   XXXXXXXXX  D R            GR  +                  LT+S  + EM  +A+SLA S  WR+ PKYTE VTHVVCG  P+T KA +RS KFLRAVA GKWVV E WLQE + RG   +EEAFE++GD+KS VPSAP RSRLAHA+ DRPGLF G  FH RG FG   SPPL +LE+MLLAN G VV T+G+L     G  S   GSG            WRP +VVIFQPS+        + + LA  LA    +    GSE   R     G  ++ D V    +VV+P WLVDSVGCFRVL+P V HRVP
Sbjct:  229 TPSFKAGDLVSVPSRSSPGVNKEGGVAKVTLVRPDGTCDVKYIVHHGREKGVPAGIISFYAVDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLGSSSRSSTPASKEAPS----SSRVRRTSRKGWCSPDLAAGQAYAACLSYMLGETQHPELDLDPDLGELLDPNEGSSGAGS--AGDGGGKVDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDERQVSDDVEGGPSQGQGRXXXXXXXXISSSANEASEGMEVFDISALSAGSNSGDNGMTLLTTAPPLDSEGRGGGGGDNHDXXXXXXXXXXXXXXXXXAVPLPTATVDFNSHGGXXXXXSGSRSRGRAAAPPTAAVRKRCRPPGSESAEVGGRPVTSGKGKSKTAKAGGSXXXXXXXXXGVDGRGDGGGLQGACANGRRGQATSXXXXXXXXXXXXXXXLTMSGSSSEMSKLADSLAKSRGWRVEPKYTEAVTHVVCGTVPKTAKARVRSVKFLRAVAGGKWVVTEAWLQECRRRGCRAEEEAFEVAGDKKSHVPSAPTRSRLAHADVDRPGLFQGIMFHFRGQFGTTGSPPLSDLESMLLANAGKVVSTLGSLC----GARSIPLGSGSGXXXXXXXXXGWRPRKVVIFQPSSPDEDQRAMEEKKLAAALAAEAEL-LRQGSESAPRGGXXWGRDEDEDGVGVVVDVVRPIWLVDSVGCFRVLKPAVHHRVP 983
[Close]
BLAST of mRNA_H-elongata_contig4785.11922.1 vs. uniprot
Match: A0A6H5KV73_9PHAE (BRCT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV73_9PHAE)

HSP 1 Score: 257 bits (657), Expect = 2.610e-66
Identity = 242/751 (32.22%), Postives = 295/751 (39.28%), Query Frame = 3 
Query: 1485 TPFYKAGDLVDVLSRSSPGVNKEGGVARVTRVNADGTYDVKYCVRHGTEKAVNPAIMSPYTLDDECDTVRANGGSDGNRG-----------------------GERQALAPSPSAASVSVRRTHRRGSCPPDAAVGQANAACLNLILGDTQHPGLDLDPGLVEDLDPETRRQHSGNT--------------------------------LVGMEGGSVCVS----GSNSAACGKG-------------KGNSKERRDPRCDAKRKNVEERED-----------------------------------EKNKSAVGSKQGV--------------------------------------------------------GGKRTREGETGRRPAP---------RDNASAVASXXXXXXXXXXXXXXDPRRGRE-------------------------------RR---------------VVLTLSSLTPEMVAVAESLAASHSWRIVPKYTEDVTHVVCGAAPRTNKANIRSAKFLRAVASGKWVVNEGWLQESQLRGEHVKEEAFELSGDRKSTVPSAPRRSRLAHAEPDRPGLFCGTTFHLRGHFGKD-SPPLCELEAMLLANGGTVVRTIGALFAQGGGGSSGSSGSGRRDSKGSCSSGTWRPPRVVIFQPSASSTKGDVQTLARDLALHTIVGPSPGSEKVGRRDRAGGAKQEGDH---VEVVKPSWLVDSVGCFRVLQPTVVHRVP 3071
            TP +KAGDLV V SRSSPGVNKEGGVA+VT V  +GT DVKY V HG EK V   I+S Y +D                                            A   +PS++S  VRRT R+G C PD A GQA AACL+ +LG+TQHP LDLDP L E LDP      +G+                                   G +G +V VS    GS+    G+G             +G   +  D     + +N  +  D                                   + + S+ GS  G                                                         GG  +     GR  AP         R + S  A                 + GR                                RR               VVLT+S  T E   +A+SLA    W++ PKYTE VTHVVCG  P+T KA +RS KFLRAVA GKWVV E WLQE + RG   +EEAFE++GD+KS VPSAP RSRLAHA+ DRPGLF G TFH RG FG   SPPL +LE+MLLAN G VV T+G+L     G  S + GS                                         L      S    +   R   G  + +G     V+VV+P WLVDSVGCFRVL+P V HRVP
Sbjct:  879 TPSFKAGDLVSVPSRSSPGVNKEGGVAKVTLVRPNGTCDVKYIVHHGREKGVPAGIISFYAVDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSTPASKGAPSSSSR-VRRTSRKGWCSPDLAAGQAYAACLSYMLGETQHPELDLDPDLGELLDPNEGSSRAGSAGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXGAKEGDDGVTVVVSDRGVGSSGGEGGQGSVKGVVGKRKRIARGGGVDDDDTTRGDRGRNERQASDGVEGGPSQGQGRRHXXXXXXXXXXXXXXXXXXXVFDISASSAGSNSGDNGMALLTTAPPLDYEGRGGGDXXXXXXXXXXXXXXXXXXXXXAPLPAAAVDSNIHGGGXXSGSRSRGRAAAPPTAAVRKRCRPSGSESAEVDGRPVTSGKGKGKTVKAGRSXXXXXXXXXXXRSGVDGRGDXXGLQGACANGRRGLATSAAAVAEEDGAVVLTMSGSTSETSKLADSLAKRLGWQVEPKYTEAVTHVVCGTVPKTAKARVRSVKFLRAVAGGKWVVTEAWLQECRRRGCRAEEEAFEVTGDKKSHVPSAPTRSRLAHADVDRPGLFQGITFHFRGQFGTTGSPPLSDLESMLLANAGKVVSTLGSLC----GARSTAVGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAAETELSRQGSESAPRGGGGCGRDDGGVGVVVDVVRPIWLVDSVGCFRVLKPAVHHRVP 1624
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BLAST of mRNA_H-elongata_contig4785.11922.1 vs. uniprot
Match: A0A2R5G0G9_9STRA (E3 ubiquitin-protein ligase LNX n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G0G9_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.360e-11
Identity = 111/453 (24.50%), Postives = 179/453 (39.51%), Query Frame = 3 
Query: 1488 PFYKAGDLVDVLSRSSPGVNKEGGVARVTRVNADGTYDVKYCVRHGTEKAVNPAIMSPYTLDDECDTVRANGGSDGNRGGERQALAPSPSAASVSVRRTHRRGSCP-----PDAAVGQANAA--CLNLILGD-TQHPGLDLDPGLVEDLDPETRRQHSGNTLVGMEGGSVCVSGSNSAACGKGKGNSKERRDPRCDAKRKN----------------------VEEREDEKNKSAVGSKQGVG----GKRTREGETGRRPAPRDNASAVASXXXXXXXXXXXXXXDPRRGRERRVVLTLSSLTPEMVAVAESLAASHSWRIVPKYTEDVTHVVCGAAPRTNKANI---RSAKFLRAVASGKWVVNEGWLQESQLRGEHVKEEAFELSGDRKSTVPS--APRRSRLAHAEP--DRPGLFCGTTFHLRGHF-GKDSPPLCELEAMLLANGGTVVR 2720
            P +  GD V V  R  PG+NK GGV ++T+V++DGTYD++Y +    EK V  AI     +D    ++          G   Q+   +P     S R   +R S P     P++ + QA  A  C      +  Q                +  R+      +      V +  +N A       ++KE    R   KR++                        + ++E   +A G  +  G     K T+     R P P    S+                      +   +VLT  S       + + +   H   +  + TE  TH+V     + ++  I   R+ K++RA+A+G W+V+  W+++S      + E  +E+ GD K+   S   P+RSR AHA+      GLF G T  L G F G   PP  +LE++    GGT++R
Sbjct:  674 PRFALGDFVTVARRMQPGMNKPGGVGKITKVHSDGTYDIRYALDGRREKMVE-AIHLTSGIDVNSTSLL---------GSHTQSTPATPVMQQWSARGRPKRRSAPRDRFDPESFISQAEIAQFCRTSEKAEEAQEXXXXXXXXXXXXXXXKGGRERQPLQRLPSRSSRV-LDAANEAKTDTNVQDAKETSSSR--GKRRSGXXXXXXXXXXXXXXXXRSASPTPQSDEEVLPTAAGDTKASGPAKKSKSTKRRTRSRSPGPEVALSST---------------------KRPTIVLTSLSSEARRQNIVDDIYNLHG-EVELEDTERATHLVVPCIRKASQGRIAKARTLKYVRAIAAGLWIVDVRWVRDSANANAWLAEGPYEIQGDMKTIGLSRDGPKRSREAHAQDKDSGKGLFAGVTMFLCGSFAGSRVPPKRDLESIFAMCGGTLIR 1091
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BLAST of mRNA_H-elongata_contig4785.11922.1 vs. uniprot
Match: A0A4D9D2G0_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D2G0_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 3.570e-8
Identity = 47/159 (29.56%), Postives = 77/159 (48.43%), Query Frame = 3 
Query: 2241 DPRRGRERRVVLTLSSLTPEMVAVAESLAASHSWRIVPKYTEDVTHVVCGAAPRTNKANIRSAKFLRAVASGKWVVNEGWLQESQLRGEHVKEEAFELSGDRKSTVPSAPRRSRLAHAEPDRPGLFCGTTFHLRGHFGKDSPPLCELEAMLLANGGTVV 2717
            D  R   + +V+  +SL   ++   ++ A     R+       VTHV+  A  R  +A  R+ K+L  + + +WV++  WL  S  +G+   E   E+ GD K+T PSAP ++RL+  +   P LF        G F    P   +LE+++ A  G VV
Sbjct:  417 DSYRTHPQDIVILPTSLPHSLLGSLDAFARRFDARVTKLPGPQVTHVLARADGR-RRAETRTIKYLHGILARRWVLSPSWLTVSLAKGKVEAEVRHEIVGDPKATEPSAPTKARLSRYK-QIPPLFAAYRVVFGGDFPPPRPTRRDLESLVKAGDGRVV 573
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BLAST of mRNA_H-elongata_contig4785.11922.1 vs. uniprot
Match: A0A8J2X388_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X388_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 6.790e-7
Identity = 33/57 (57.89%), Postives = 38/57 (66.67%), Query Frame = 3 
Query: 1488 PFYKAGDLVDVLSRSSPGVNKEGGVARVTRVNADGTYDVKYCVRHGTEKAVNPAIMS 1658
            P Y  GDLV+V    SPG N+EGG  RVT VN+DGTYDVKY +  GT + V  A MS
Sbjct:  238 PPYSVGDLVEVKPDWSPGCNREGGPGRVTAVNSDGTYDVKYSLGRGTMQGVPLADMS 294
[Close]
BLAST of mRNA_H-elongata_contig4785.11922.1 vs. uniprot
Match: UPI0018D18CDD (breast cancer type 1 susceptibility protein homolog n=1 Tax=Plutella xylostella TaxID=51655 RepID=UPI0018D18CDD)

HSP 1 Score: 64.7 bits (156), Expect = 1.240e-6
Identity = 50/153 (32.68%), Postives = 76/153 (49.67%), Query Frame = 3 
Query: 2256 RERRVVLTLSSLTPEMVAVAESLAASHSWRIVPKYTEDVTHVVCGAAPRTNKANIRSAKFLRAVASGKWVVNEGWLQESQLRGEHVKEEAFELSGDRKSTVPSAPRRSRLAHAEPDRPGLFCGTTFHLRGHFGKDSPPLCELEAMLLANGGTV 2714
            + +++V+  S L+       + L     W+ V KYT D+TH+V  +     KA  RS K++ A+A+GKW+V   W+++        +EE FE      ST    PRRSRLA  +     +F G TF     F      +  L++ML A GGT+
Sbjct: 1095 KNKKLVIAGSCLSATEQTNLKILCFKRKWKFVDKYTPDLTHLVV-SVDEEFKAQ-RSVKYMCALAAGKWIVANKWVEKCLESNTLYEEEPFEALD---STGDPGPRRSRLATRK-----VFEGITFFCMPPFSVLD--IDTLKSMLAAAGGTI 1235
[Close]
BLAST of mRNA_H-elongata_contig4785.11922.1 vs. uniprot
Match: A0A485KVR3_9STRA (Aste57867_12351 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KVR3_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.600e-5
Identity = 48/134 (35.82%), Postives = 61/134 (45.52%), Query Frame = 3 
Query: 1497 KAGDLVDVLSRSSPGVNKEGGVARVTRVNADGTYDVKYCVRHGTEKAVNPAIMSPYTLDDECDTVRANGGSDGNRGGERQALAPSPSAASVSVRRTHRRGSCPPDAAVGQANAACLNLILGDTQHPGLDLDPGL 1898
            K G LV V  R  PG+NKEGGVARV RVN DGT +VKY V  G ++ + PA +     D+       +  S  N              A++SV RT R        A  +A AA +     DT     DL P +
Sbjct:   33 KQGTLVMVDPRFWPGMNKEGGVARVERVNQDGTVNVKYVVVGGRDRNIPPACIHVTAADETLTPTTRSSRSQHNN-------------AALSVMRTRR--------AAKEATAASVEDDKTDTSLSDDDLRPSM 145
[Close]
BLAST of mRNA_H-elongata_contig4785.11922.1 vs. uniprot
Match: A0A7S2RRG2_9STRA (RING-type E3 ubiquitin transferase BRCA1 n=2 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RRG2_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 3.990e-5
Identity = 28/56 (50.00%), Postives = 34/56 (60.71%), Query Frame = 3 
Query: 1473 PSLKTPFYKAGDLVDVLSRSSPGVNKEGGVARVTRVNADGTYDVKYCVRHGTEKAV 1640
            P    PF+  G+ V V  R  PG NK GG A++T+VN D TYDV+Y V   TEK V
Sbjct:  616 PERVAPFFVVGNTVTVSRRMYPGSNKPGGAAKITKVNDDDTYDVRYIVARNTEKRV 671
[Close]
BLAST of mRNA_H-elongata_contig4785.11922.1 vs. uniprot
Match: A0A1Z5KMS0_FISSO (BRCA1-associated RING domain protein 1 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KMS0_FISSO)

HSP 1 Score: 59.3 bits (142), Expect = 4.840e-5
Identity = 30/65 (46.15%), Postives = 41/65 (63.08%), Query Frame = 3 
Query: 1464 SPSPSLKTPFYKAGDLVDVLSRSSPGVNKEGGVARVTRVNADGTYDVKYCVRHGTEKAVNPAIMS 1658
            S S  L T  +K GD++ V  R+ PG+NK+GG+A+V +VN D +YDV Y V  G EK V+    S
Sbjct:  401 SDSKILATASFKVGDIIAVKPRTWPGINKQGGIAKVIKVNEDNSYDVSY-VLGGKEKRVDAVFCS 464
[Close]
BLAST of mRNA_H-elongata_contig4785.11922.1 vs. uniprot
Match: A0A485LNE1_9STRA (Aste57867_23394 protein n=2 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LNE1_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 5.200e-5
Identity = 32/76 (42.11%), Postives = 46/76 (60.53%), Query Frame = 3 
Query: 1470 SPSLKTPFYKAGDLVDVLSRSSPGVNKEGGVARVTRVNADGTYDVKYCVRHGTEKAVNPAIMSPYTLDDECDTVRA 1697
            +P+ +   +  GD+V V++R+ PG+NK GG A VT VN D TY+VKY V  G E  V+   +S +T   E   VR+
Sbjct:  200 NPAAEVMKFTPGDVVQVMARTWPGINKLGGTAWVTAVNPDDTYNVKY-VLGGRENNVHAGYVSLFTERSEATPVRS 274
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig4785.11922.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D8LPM9_ECTSI7.710e-7534.60BRCT domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KV73_9PHAE2.610e-6632.22BRCT domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A2R5G0G9_9STRA1.360e-1124.50E3 ubiquitin-protein ligase LNX n=1 Tax=Hondaea fe... [more]
A0A4D9D2G0_9STRA3.570e-829.56Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A8J2X388_9STRA6.790e-757.89Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
UPI0018D18CDD1.240e-632.68breast cancer type 1 susceptibility protein homolo... [more]
A0A485KVR3_9STRA1.600e-535.82Aste57867_12351 protein n=1 Tax=Aphanomyces stella... [more]
A0A7S2RRG2_9STRA3.990e-550.00RING-type E3 ubiquitin transferase BRCA1 n=2 Tax=l... [more]
A0A1Z5KMS0_FISSO4.840e-546.15BRCA1-associated RING domain protein 1 n=1 Tax=Fis... [more]
A0A485LNE1_9STRA5.200e-542.11Aste57867_23394 protein n=2 Tax=Aphanomyces stella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig4785contigH-elongata_contig4785:6317..10534 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score283.5
Seed ortholog evalue2.4e-73
Seed eggNOG ortholog2880.D8LPM9
KEGG koko:K10605,ko:K19403
KEGG Pathwayko01524,ko03440,ko03460,ko04120,ko04151,ko05206,ko05224,map01524,map03440,map03460,map04120,map04151,map05206,map05224
KEGG ModuleM00295
EggNOG free text desc.E3 ubiquitin-protein ligase that specifically mediates the formation of 'Lys-6'-linked polyubiquitin chains and plays a central role in DNA repair by facilitating cellular responses to DNA damage. It is unclear whether it also mediates the formation of other types of polyubiquitin chains. The E3 ubiquitin-protein ligase activity is required for its tumor suppressor function. The BRCA1-BARD1 heterodimer coordinates a diverse range of cellular pathways such as DNA damage repair, ubiquitination and transcriptional regulation to maintain genomic stability. Regulates centrosomal microtubule nucleation. Required for normal cell cycle progression from G2 to mitosis. Required for appropriate cell cycle arrests after ionizing irradiation in both the S-phase and the G2 phase of the cell cycle. Involved in transcriptional regulation of P21 in response to DNA damage. Required for FANCD2 targeting to sites of DNA damage. May function as a transcriptional regulator
EggNOG OGsKOG4362@1,KOG4362@2759
EC2.3.2.27
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01009,ko03036,ko03400,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionBRCT domain-containing protein
Ec32 orthologEc-06_004760.1
Exons4
Model size3551
Cds size1857
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig4785.11922.1prot_H-elongata_contig4785.11922.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig4785 6779..9276 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930789.7759955-UTR-H-elongata_contig4785:6316..67781622930789.7759955-UTR-H-elongata_contig4785:6316..6778Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4785 6317..6778 -
1691679571.1901197-UTR-H-elongata_contig4785:6316..67781691679571.1901197-UTR-H-elongata_contig4785:6316..6778Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4785 6317..6778 -
1622930789.8589323-UTR-H-elongata_contig4785:9276..93151622930789.8589323-UTR-H-elongata_contig4785:9276..9315Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4785 9277..9315 -
1691679571.235133-UTR-H-elongata_contig4785:9276..93151691679571.235133-UTR-H-elongata_contig4785:9276..9315Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4785 9277..9315 -
1622930789.8751266-UTR-H-elongata_contig4785:9341..105341622930789.8751266-UTR-H-elongata_contig4785:9341..10534Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4785 9342..10534 -
1691679571.2446008-UTR-H-elongata_contig4785:9341..105341691679571.2446008-UTR-H-elongata_contig4785:9341..10534Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4785 9342..10534 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930789.8033075-CDS-H-elongata_contig4785:6778..72671622930789.8033075-CDS-H-elongata_contig4785:6778..7267Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4785 6779..7267 -
1691679571.2007513-CDS-H-elongata_contig4785:6778..72671691679571.2007513-CDS-H-elongata_contig4785:6778..7267Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4785 6779..7267 -
1622930789.8226683-CDS-H-elongata_contig4785:7698..79661622930789.8226683-CDS-H-elongata_contig4785:7698..7966Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4785 7699..7966 -
1691679571.210026-CDS-H-elongata_contig4785:7698..79661691679571.210026-CDS-H-elongata_contig4785:7698..7966Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4785 7699..7966 -
1622930789.8399386-CDS-H-elongata_contig4785:8176..92761622930789.8399386-CDS-H-elongata_contig4785:8176..9276Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4785 8177..9276 -
1691679571.2227554-CDS-H-elongata_contig4785:8176..92761691679571.2227554-CDS-H-elongata_contig4785:8176..9276Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4785 8177..9276 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig4785.11922.1

>prot_H-elongata_contig4785.11922.1 ID=prot_H-elongata_contig4785.11922.1|Name=mRNA_H-elongata_contig4785.11922.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=619bp
MYGVESDRPTSGPASDVFEDATPSGPPSETGNVDVALRGSNCRSSASAAP
STPDESAKRSQAESQLPPRQMMPPPPPSPSPSLKTPFYKAGDLVDVLSRS
SPGVNKEGGVARVTRVNADGTYDVKYCVRHGTEKAVNPAIMSPYTLDDEC
DTVRANGGSDGNRGGERQALAPSPSAASVSVRRTHRRGSCPPDAAVGQAN
AACLNLILGDTQHPGLDLDPGLVEDLDPETRRQHSGNTLVGMEGGSVCVS
GSNSAACGKGKGNSKERRDPRCDAKRKNVEEREDEKNKSAVGSKQGVGGK
RTREGETGRRPAPRDNASAVASSSDSGGGAMVAAASDPRRGRERRVVLTL
SSLTPEMVAVAESLAASHSWRIVPKYTEDVTHVVCGAAPRTNKANIRSAK
FLRAVASGKWVVNEGWLQESQLRGEHVKEEAFELSGDRKSTVPSAPRRSR
LAHAEPDRPGLFCGTTFHLRGHFGKDSPPLCELEAMLLANGGTVVRTIGA
LFAQGGGGSSGSSGSGRRDSKGSCSSGTWRPPRVVIFQPSASSTKGDVQT
LARDLALHTIVGPSPGSEKVGRRDRAGGAKQEGDHVEVVKPSWLVDSVGC
FRVLQPTVVHRVPRPHRW*
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mRNA from alignment at H-elongata_contig4785:6317..10534-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig4785.11922.1 ID=mRNA_H-elongata_contig4785.11922.1|Name=mRNA_H-elongata_contig4785.11922.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4218bp|location=Sequence derived from alignment at H-elongata_contig4785:6317..10534- (Himanthalia elongata Himel1 dioecious)
CGCAGTTAGGAGTCGCTCTCGCCAGGGCACCGGTAGTCCCGACATAAGGC
GTACTAGTCGTAGGATCGGTAGGATCACTGGTTCCGCAAGCGGCCCTATC
CCCACGAGAGAAAGAACTGCCGCTTATGATGTGATGATGACAAGTGATAT
CGCTGGTAATGCTGCCCTTACGACAGACCCGTTACGGACGCCTACATGTC
GAGATGCGAGCAAGCACGCACCCACGGGCTCACAGGCTCCGCCGAACCGT
GACGCCCTCGAGGCAGGGGAGGGCCGCAACGAGGAGGGTCAGAACAAAAC
AACAGAGAGCAGTGTCGCAGAACAAGGTCGTGGGTCGGACACGACGATGG
CTACAATCGGCAGGGAGAGAAGGGCAAACTTGGACGGCGCCCGGATCGAA
CAAAGCCGTGACGTCGTCGAACAAGAAAAAGATCGAAGAGGAGCAGCCAA
GGGTTATAAGGTTCATAGCAATGGGTTCGACCAAAGAGACGACGACTCCG
GCGTCACATTAACTGTAGCGAACGGGGAAGGAGTGTGTGGCTCATCGGGA
GTCCGACCTCGACGGGATCGTGATACGGTCGAGGAAAAAAAGAACCACCA
AATGGAAGAGGTTCCACTTCAGACGAATGAGAGCGGTAGTGCCGACTACG
GTGAAGATTCGGACACGACCTTAATCATCGCAAGCGAGGAAGAAGAGATA
GAATTGTCTGATGACGCCGAGCTACGACCGTGTGGCGGGGGGTCTCCTGA
AGGAACGACAGAAGTCTCCGATGGGGAGGTTAACCAAGGGCGACCAGTGC
CACGGGGTATCGACCCACGGTCCCCGGTTGTAAGTAACAAACAGAAGCAC
CACGAGCTCAACCGATCCCTAGCAGCAGAGGCTAGAAAGCTTGAAAACGA
GGAAGGTGAACCAGGACGCCGAGAAATCGTAGCTGGTCCTCGCCAACGGC
CTCGGCAAGGCCTCACCTTGGGGTCGATTGTGCCCAAGGATCGGCAGGGC
GAAAGAGATCGACGGGGTGTACCCCTGCAGCCCACGCGTGGCTCATCAGA
AATTGCCACGCGCGCCTTGACCGCTGTGCTAGAGGACGACCTTGGCTCGA
CCGAAGGCGGAGAGACTCGAAGTCCCTCGAGATGCCCAGCCGTGAAGAAT
CCGTCTTCTTCGGAGGTCGGGATCGAGGTAGCGTTATCGCCTCGTTTCGC
TGGTCAGCAAACGCGAAAGCTCGACGGAAGCCTACCTCGGAGATACCAGA
CCGTCAAAATGTATGGTGTTGAAAGCGACCGACCGACCAGTGGCCCAGCC
TCAGACGTTTTTGAGGACGCGACGCCCTCGGGACCCCCTTCGGAAACGGG
AAATGTGGACGTAGCTCTTCGGGGGTCGAATTGCCGGAGCTCTGCGTCCG
CGGCGCCCAGCACGCCGGATGAATCTGCTAAGAGATCTCAGGCAGAGTCG
CAGCTCCCACCGCGGCAGATGATGCCACCGCCGCCGCCTTCTCCGTCACC
CTCTCTTAAAACACCATTCTACAAGGCTGGAGATTTGGTTGACGTGCTGT
CTCGATCTTCACCTGGAGTTAACAAGGAAGGGGGGGTGGCGAGGGTAACT
CGAGTCAACGCCGATGGTACCTATGATGTAAAGTACTGCGTGCGTCACGG
CACCGAGAAAGCTGTCAACCCTGCCATTATGTCTCCTTACACATTGGATG
ACGAATGCGACACGGTACGCGCTAATGGTGGCAGCGATGGAAACCGGGGG
GGGGAAAGGCAAGCGCTAGCCCCCTCGCCGTCCGCAGCGAGTGTTTCCGT
CCGGAGGACCCATCGGAGGGGATCTTGTCCGCCTGATGCAGCGGTGGGAC
AGGCCAACGCGGCTTGCCTCAATCTCATCTTGGGTGACACCCAGCATCCA
GGGCTTGATCTGGACCCCGGCCTCGTCGAAGACCTAGATCCCGAGACTCG
CCGCCAACATTCGGGGAATACGTTGGTGGGGATGGAGGGGGGCAGCGTTT
GTGTGTCGGGTTCGAACAGCGCCGCTTGTGGAAAGGGGAAAGGAAACAGC
AAAGAGAGAAGGGATCCACGTTGCGACGCAAAGAGGAAGAACGTTGAGGA
GAGAGAGGACGAAAAGAACAAGAGTGCGGTCGGATCAAAACAAGGCGTCG
GTGGCAAAAGGACGCGTGAGGGGGAAACAGGACGTCGGCCGGCGCCACGA
GATAATGCTTCCGCCGTGGCAAGCAGCAGTGACTCCGGGGGGGGTGCCAT
GGTAGCAGCGGCCTCTGATCCCCGTCGCGGTCGAGAGAGACGGGTGGTGT
TGACTTTGAGCTCGCTGACGCCCGAGATGGTTGCCGTCGCCGAGTCGCTG
GCTGCGAGGTGAGAAGTGAAGAGGTGGGCGGGAGGCGAGCCGCGCTTAAC
ATACCGTTTGCTTGCGTTTTGTGTTCCCTATTTTCACTTTGAGTCGGCAT
GAAACACTGCAGCAACGATCGCCTACGCCAGCTTTCCCGCCCAGCCAGTT
GTTGCTACTGCTCATCGCTTCTGTCTTTCTGGCCTCTTTCTTTTCAAAAT
GCGCCTCCCCACGAACAGCCACAGCTGGAGAATCGTGCCCAAATATACGG
AAGACGTGACCCACGTCGTATGTGGCGCCGCGCCGCGAACCAACAAAGCT
AACATCCGCAGCGCTAAATTCCTGCGAGCAGTGGCCAGTGGTAAGTGGGT
CGTGAACGAAGGCTGGCTGCAGGAGAGCCAGCTGCGGGGGGAGCACGTCA
AGGAGGAGGCGTTCGAGCTTTCCGGCGACAGGAAGAGCACCGTGCCTTCC
GCTCCCAGGAGGTCGAGACTCGCGCACGCCGAGCCGGTGAGAAGCATCAG
CTGCTAACAAATCGTTTAACAGTGATAACGCTGGATGTCGCCGTGGCTTA
TCTGGGCGTGGGAACCCTCCGTGAGAGCTTCACCCCACACAGCCACCTCA
TCGGCACCGTGCGCATTCTGGAACCTCACCTTGCCTCCTCTGAAGAATAT
CTAGCAGGGGGTTTGAGCACATACATCTCTACCTACAAATTCTGCGCAGG
GCGCTTCGACACGTGAACGAATCTAAGGAATTACGCAAGCGCAGTTCACT
CCGGAGGCACGGCCGTATACGTAATGAGCGCACCAGTTGCGGCTGTGCCT
CATCAGTAAGTAGCCCCAACATACCACACCACCATAACCAACCTATCTAT
ATATCTTCAACAACCTTACTTCCTTTATTTCTTCCTTGGCATTTTCTCGG
TGTGTGATCCGCCGCAGGATCGACCAGGGCTGTTCTGCGGCACGACGTTC
CACCTGCGAGGGCACTTCGGAAAAGACTCCCCGCCGCTGTGCGAGCTCGA
AGCCATGCTCCTGGCCAACGGGGGAACCGTGGTGAGGACCATCGGCGCCC
TCTTTGCTCAGGGGGGCGGTGGCAGTAGCGGCAGCAGCGGAAGCGGAAGA
CGCGACAGCAAGGGCTCGTGCAGTAGCGGGACCTGGCGGCCGCCGCGGGT
GGTGATCTTCCAGCCCTCGGCAAGCTCGACGAAAGGGGACGTCCAAACTC
TCGCCAGAGACTTGGCCCTCCATACGATTGTGGGGCCGTCGCCGGGGTCA
GAAAAGGTCGGCCGCCGCGACCGCGCCGGGGGCGCTAAGCAGGAAGGGGA
TCACGTCGAGGTTGTAAAGCCTTCGTGGCTCGTCGATAGCGTAGGGTGTT
TCCGAGTGTTGCAGCCGACCGTCGTGCACCGCGTTCCTCGCCCGCATCGT
TGGTGAGGGGATCGATTTTTTTTTTTTCTCAACCCACTAGGGCTTCTCTT
AAGTACACTCCCTCGGTTGCCGTTTGTAGGCACCAAGAAGGAGCCCAGGG
AAACGCTTGCGCTTATTATGCCGATGCGCGTCGTAAACAACTGTATATAA
GCATATAACGCTAGATTAATTTTCTCCCCCGCATGTACCCGTTGCTCATT
GCAGCCCTTTCTGATTTCTTGTGTATTCTTAGGTGTTAGTGGATTGCTTC
TCCCGGTTCTTAGGTGCTCGTTGACTTTCATAAGGTCGTATTGAAGAGCT
TACATAGTGAGCCGCTGCCATATTTCATTTGTACCGCTACAGTAGATGAA
AGGATGCACGCCGAAAAACCTTGCTCTCAAACCGGCCAAGAGTTCCAGGT
CGGCGTCTTATATAACATATTTTTGCACCACGAAAAAAGTGGGCAATCTA
CGGAGACGTCGCACGCCC
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Coding sequence (CDS) from alignment at H-elongata_contig4785:6317..10534-

>mRNA_H-elongata_contig4785.11922.1 ID=mRNA_H-elongata_contig4785.11922.1|Name=mRNA_H-elongata_contig4785.11922.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3714bp|location=Sequence derived from alignment at H-elongata_contig4785:6317..10534- (Himanthalia elongata Himel1 dioecious)
ATGTATGGTGTTGAAAGCGACCGACCGACCAGTGGCCCAGCCTCAGACGT
TTTTGAGGACGCGACGCCCTCGGGACCCCCTTCGGAAACGGGAAATGTGG
ACGTAGCTCTTCGGGGGTCGAATTGCCGGAGCTCTGCGTCCGCGGCGCCC
AGCACGCCGGATGAATCTGCTAAGAGATCTCAGGCAGAGTCGCAGCTCCC
ACCGCGGCAGATGATGCCACCGCCGCCGCCTTCTCCGTCACCCTCTCTTA
AAACACCATTCTACAAGGCTGGAGATTTGGTTGACGTGCTGTCTCGATCT
TCACCTGGAGTTAACAAGGAAGGGGGGGTGGCGAGGGTAACTCGAGTCAA
CGCCGATGGTACCTATGATGTAAAGTACTGCGTGCGTCACGGCACCGAGA
AAGCTGTCAACCCTGCCATTATGTCTCCTTACACATTGGATGACGAATGC
GACACGGTACGCGCTAATGGTGGCAGCGATGGAAACCGGGGGGGGGAAAG
GCAAGCGCTAGCCCCCTCGCCGTCCGCAGCGAGTGTTTCCGTCCGGAGGA
CCCATCGGAGGGGATCTTGTCCGCCTGATGCAGCGGTGGGACAGGCCAAC
GCGGCTTGCCTCAATCTCATCTTGGGTGACACCCAGCATCCAGGGCTTGA
TCTGGACCCCGGCCTCGTCGAAGACCTAGATCCCGAGACTCGCCGCCAAC
ATTCGGGGAATACGTTGGTGGGGATGGAGGGGGGCAGCGTTTGTGTGTCG
GGTTCGAACAGCGCCGCTTGTGGAAAGGGGAAAGGAAACAGCAAAGAGAG
AAGGGATCCACGTTGCGACGCAAAGAGGAAGAACGTTGAGGAGAGAGAGG
ACGAAAAGAACAAGAGTGCGGTCGGATCAAAACAAGGCGTCGGTGGCAAA
AGGACGCGTGAGGGGGAAACAGGACGTCGGCCGGCGCCACGAGATAATGC
TTCCGCCGTGGCAAGCAGCAGTGACTCCGGGGGGGGTGCCATGGTAGCAG
CGGCCTCTGATCCCCGTCGCGGTCGAGAGAGACGGGTGGTGTTGACTTTG
AGCTCGCTGACGCCCGAGATGGTTGCCGTCGCCGAGTCGCTGGCTGCGAG
ATGTATGGTGTTGAAAGCGACCGACCGACCAGTGGCCCAGCCTCAGACGT
TTTTGAGGACGCGACGCCCTCGGGACCCCCTTCGGAAACGGGAAATGTGG
ACGTAGCTCTTCGGGGGTCGAATTGCCGGAGCTCTGCGTCCGCGGCGCCC
AGCACGCCGGATGAATCTGCTAAGAGATCTCAGGCAGAGTCGCAGCTCCC
ACCGCGGCAGATGATGCCACCGCCGCCGCCTTCTCCGTCACCCTCTCTTA
AAACACCATTCTACAAGGCTGGAGATTTGGTTGACGTGCTGTCTCGATCT
TCACCTGGAGTTAACAAGGAAGGGGGGGTGGCGAGGGTAACTCGAGTCAA
CGCCGATGGTACCTATGATGTAAAGTACTGCGTGCGTCACGGCACCGAGA
AAGCTGTCAACCCTGCCATTATGTCTCCTTACACATTGGATGACGAATGC
GACACGGTACGCGCTAATGGTGGCAGCGATGGAAACCGGGGGGGGGAAAG
GCAAGCGCTAGCCCCCTCGCCGTCCGCAGCGAGTGTTTCCGTCCGGAGGA
CCCATCGGAGGGGATCTTGTCCGCCTGATGCAGCGGTGGGACAGGCCAAC
GCGGCTTGCCTCAATCTCATCTTGGGTGACACCCAGCATCCAGGGCTTGA
TCTGGACCCCGGCCTCGTCGAAGACCTAGATCCCGAGACTCGCCGCCAAC
ATTCGGGGAATACGTTGGTGGGGATGGAGGGGGGCAGCGTTTGTGTGTCG
GGTTCGAACAGCGCCGCTTGTGGAAAGGGGAAAGGAAACAGCAAAGAGAG
AAGGGATCCACGTTGCGACGCAAAGAGGAAGAACGTTGAGGAGAGAGAGG
ACGAAAAGAACAAGAGTGCGGTCGGATCAAAACAAGGCGTCGGTGGCAAA
AGGACGCGTGAGGGGGAAACAGGACGTCGGCCGGCGCCACGAGATAATGC
TTCCGCCGTGGCAAGCAGCAGTGACTCCGGGGGGGGTGCCATGGTAGCAG
CGGCCTCTGATCCCCGTCGCGGTCGAGAGAGACGGGTGGTGTTGACTTTG
AGCTCGCTGACGCCCGAGATGGTTGCCGTCGCCGAGTCGCTGGCTGCGAG
CCACAGCTGGAGAATCGTGCCCAAATATACGGAAGACGTGACCCACGTCG
TATGTGGCGCCGCGCCGCGAACCAACAAAGCTAACATCCGCAGCGCTAAA
TTCCTGCGAGCAGTGGCCAGTGGTAAGTGGGTCGTGAACGAAGGCTGGCT
GCAGGAGAGCCAGCTGCGGGGGGAGCACGTCAAGGAGGAGGCGTTCGAGC
TTTCCGGCGACAGGAAGAGCACCGTGCCTTCCGCTCCCAGGAGGTCGAGA
CTCGCGCACGCCGAGCCGCCACAGCTGGAGAATCGTGCCCAAATATACGG
AAGACGTGACCCACGTCGTATGTGGCGCCGCGCCGCGAACCAACAAAGCT
AACATCCGCAGCGCTAAATTCCTGCGAGCAGTGGCCAGTGGTAAGTGGGT
CGTGAACGAAGGCTGGCTGCAGGAGAGCCAGCTGCGGGGGGAGCACGTCA
AGGAGGAGGCGTTCGAGCTTTCCGGCGACAGGAAGAGCACCGTGCCTTCC
GCTCCCAGGAGGTCGAGACTCGCGCACGCCGAGCCGGATCGACCAGGGCT
GTTCTGCGGCACGACGTTCCACCTGCGAGGGCACTTCGGAAAAGACTCCC
CGCCGCTGTGCGAGCTCGAAGCCATGCTCCTGGCCAACGGGGGAACCGTG
GTGAGGACCATCGGCGCCCTCTTTGCTCAGGGGGGCGGTGGCAGTAGCGG
CAGCAGCGGAAGCGGAAGACGCGACAGCAAGGGCTCGTGCAGTAGCGGGA
CCTGGCGGCCGCCGCGGGTGGTGATCTTCCAGCCCTCGGCAAGCTCGACG
AAAGGGGACGTCCAAACTCTCGCCAGAGACTTGGCCCTCCATACGATTGT
GGGGCCGTCGCCGGGGTCAGAAAAGGTCGGCCGCCGCGACCGCGCCGGGG
GCGCTAAGCAGGAAGGGGATCACGTCGAGGTTGTAAAGCCTTCGTGGCTC
GTCGATAGCGTAGGGTGTTTCCGAGTGTTGCAGCCGACCGTCGTGCACCG
CGTTCCTCGCCCGCATCGTTGGTGAGATCGACCAGGGCTGTTCTGCGGCA
CGACGTTCCACCTGCGAGGGCACTTCGGAAAAGACTCCCCGCCGCTGTGC
GAGCTCGAAGCCATGCTCCTGGCCAACGGGGGAACCGTGGTGAGGACCAT
CGGCGCCCTCTTTGCTCAGGGGGGCGGTGGCAGTAGCGGCAGCAGCGGAA
GCGGAAGACGCGACAGCAAGGGCTCGTGCAGTAGCGGGACCTGGCGGCCG
CCGCGGGTGGTGATCTTCCAGCCCTCGGCAAGCTCGACGAAAGGGGACGT
CCAAACTCTCGCCAGAGACTTGGCCCTCCATACGATTGTGGGGCCGTCGC
CGGGGTCAGAAAAGGTCGGCCGCCGCGACCGCGCCGGGGGCGCTAAGCAG
GAAGGGGATCACGTCGAGGTTGTAAAGCCTTCGTGGCTCGTCGATAGCGT
AGGGTGTTTCCGAGTGTTGCAGCCGACCGTCGTGCACCGCGTTCCTCGCC
CGCATCGTTGGTGA
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