mRNA_H-elongata_contig47809.11916.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig47809.11916.1 vs. uniprot
Match: D7FUR2_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUR2_ECTSI) HSP 1 Score: 315 bits (808), Expect = 1.620e-106 Identity = 159/206 (77.18%), Postives = 168/206 (81.55%), Query Frame = 1
Query: 1 MKSFAVAAASLCVLAPVAAFVPSAP-SLVSXXXXXXXXXXXXTPERSVAIPIDPYPEGLDGEMVGDVGFDPAGFANNPPSWVSGEGSGTAARIKWYREAELAHCRVAMLAATGWIFPEIYHFPGNNVLGPDRFAELNPLLAYGKIPGAGGIQIVVTLLILELIRLNRSVRGD-GPPGDIGLGQGEGRWNPFGFKYTEEQYREKQLQ 612
MKSF AA SLC LAP +AFVP A L TPERS++IPIDPYPEGLDGEMVGDVGFDPAGFANNPPSWV GEG+GTAAR+KWYREAELAH RVAMLAA GWIFPEIYHFPGN VLGPDRFAE+NPLLAY IP AGGIQIVVT+LILE IRLNRS+R D G GDIGLGQGEGRWNPF F YTEE+Y EKQLQ
Sbjct: 1 MKSFVAAATSLCALAPASAFVPGASLPLAGVRSAPSKLAMAATPERSISIPIDPYPEGLDGEMVGDVGFDPAGFANNPPSWVQGEGTGTAARVKWYREAELAHGRVAMLAAAGWIFPEIYHFPGNTVLGPDRFAEMNPLLAYDNIPNAGGIQIVVTILILETIRLNRSIRSDSGVAGDIGLGQGEGRWNPFNFNYTEEEYAEKQLQ 206
BLAST of mRNA_H-elongata_contig47809.11916.1 vs. uniprot
Match: W7TTD7_9STRA (Light-harvesting protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TTD7_9STRA) HSP 1 Score: 199 bits (506), Expect = 3.180e-60 Identity = 98/160 (61.25%), Postives = 115/160 (71.88%), Query Frame = 1
Query: 136 SVAIPIDPYPEGLDGEMVGDVGFDPAGFANNPPS-WVSGEGSGTAARIKWYREAELAHCRVAMLAATGWIFPEIYHFPGNNVLGPDRFAELNPLLAYGKIPGAGGIQIVVTLLILELIRLNRSVRGDGPPGDIGLGQGEGRWNPFGFKYTEEQYREKQLQ 612
S A+P D P LDG + GDVGFDP GF+NNPP W+ G GSG + +KWYREAE+ H RVAMLAA GW+FP IYH PGN +G D FA LNP A +P AG QI T+ +EL R+NR +RGD GD+GLGQGEGRWNPFGF Y+EE+Y EKQLQ
Sbjct: 85 STALPFDKRPPNLDGSLPGDVGFDPVGFSNNPPRPWLIG-GSGRS--LKWYREAEIVHGRVAMLAALGWVFPNIYHLPGNEDVGVDAFANLNPFGALTTVPAAGLWQIAATVGAIELFRVNRVIRGDKEAGDLGLGQGEGRWNPFGFNYSEEEYAEKQLQ 241
BLAST of mRNA_H-elongata_contig47809.11916.1 vs. uniprot
Match: A0A835YWE6_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWE6_9STRA) HSP 1 Score: 196 bits (499), Expect = 7.870e-60 Identity = 111/201 (55.22%), Postives = 129/201 (64.18%), Query Frame = 1
Query: 13 AVAAASLCVLAPVAAFVPSAPSLVSXXXXXXXXXXXXTPERSVAIPIDPYPEGLDGEMVGDVGFDPAGFANNPP-SWVSGEGSGTAARIKWYREAELAHCRVAMLAATGWIFPEIYHFPGNNVLGPDRFAELNPLLAYGKIPGAGGIQIVVTLLILELIRLNRSVRGDGPPGDIGLGQGEGRWNPFGFKYTEEQYREKQLQ 612
AVAA +L + AP AAFVP P ERS AIP D PE LDG +VGDVGFDPAGF+NNPP +W+ G G +KWYREAE+ H R AMLAA GW+ PE HFPGN +G D FA+ NP A +P AG QI T+ +E+ R+NR VRGD PGD+GLGQG NPFGF Y+EEQYREKQLQ
Sbjct: 3 AVAALAL-LAAPAAAFVPVTPVATPSKVVLQA-------ERSTAIPFDKRPENLDGTLVGDVGFDPAGFSNNPPRAWLIG---GEGRSLKWYREAEIVHGRTAMLAALGWVVPEFVHFPGNEAVGVDAFAKTNPWEALYSVPDAGLWQIAATIFAVEVYRINRVVRGDKEPGDLGLGQGG--LNPFGFDYSEEQYREKQLQ 190
BLAST of mRNA_H-elongata_contig47809.11916.1 vs. uniprot
Match: A0A836CAI0_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAI0_9STRA) HSP 1 Score: 189 bits (481), Expect = 4.540e-57 Identity = 96/162 (59.26%), Postives = 112/162 (69.14%), Query Frame = 1
Query: 130 ERSVAIPIDPYPEGLDGEMVGDVGFDPAGFANNPP-SWVSGEGSGTAARIKWYREAELAHCRVAMLAATGWIFPEIYHFPGNNVLGPDRFAELNPLLAYGKIPGAGGIQIVVTLLILELIRLNRSVRGDGPPGDIGLGQGEGRWNPFGFKYTEEQYREKQLQ 612
ERS AIP D PE LDG +VGDVGFDPAGF+NNPP +W+ G G +KWYREAE+ H R AMLAA GWI PE HFPGN +G D FA+ NP A +P AG QI T+ +E+ R+NR VRG PGD+GLGQG NPFGF YTEE+Y+ KQLQ
Sbjct: 37 ERSTAIPFDKRPENLDGSLVGDVGFDPAGFSNNPPRAWLIG---GEGRSLKWYREAEIVHGRTAMLAALGWIVPEFVHFPGNEQVGVDAFAKTNPWDALYSVPDAGLWQIAATIFAVEVFRINRVVRGGAEPGDLGLGQGG--LNPFGFNYTEEEYKTKQLQ 193
BLAST of mRNA_H-elongata_contig47809.11916.1 vs. uniprot
Match: A0A0G4H236_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4H236_9ALVE) HSP 1 Score: 189 bits (479), Expect = 4.540e-56 Identity = 91/162 (56.17%), Postives = 109/162 (67.28%), Query Frame = 1
Query: 130 ERSVAIPIDPYPEGLDGEMVGDVGFDPAGFANN-PPSWVSGEGSGTAARIKWYREAELAHCRVAMLAATGWIFPEIYHFPGNNVLGPDRFAELNPLLAYGKIPGAGGIQIVVTLLILELIRLNRSVRGDGPPGDIGLGQGEGRWNPFGFKYTEEQYREKQLQ 612
+RS+A+P D YP GLDG + GD GFDPAGF NN P W+ G G +KWYREAE+ H RVAMLA GWIFPEI HF GN +G D FAELNPL A P AG +QI + LE R+ R ++GD GD+GLGQGEGRWNPF F Y+ E+Y+ Q +
Sbjct: 96 DRSIALPFDKYPPGLDGTLAGDYGFDPAGFTNNLPRQWLIG---GEERSLKWYREAEITHARVAMLATLGWIFPEIAHFGGNAQVGQDAFAELNPLKAIYTAPAAGLVQIAFGIFALEYFRIKRVIQGDAAAGDLGLGQGEGRWNPFKFNYSPEEYKTMQTR 254
BLAST of mRNA_H-elongata_contig47809.11916.1 vs. uniprot
Match: A0A6V1NAG2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NAG2_HETAK) HSP 1 Score: 182 bits (461), Expect = 5.510e-54 Identity = 90/157 (57.32%), Postives = 107/157 (68.15%), Query Frame = 1
Query: 130 ERSVAIPIDPYPEGLDGEMVGDVGFDPAGFANNPPS-WVSGEGSGTAARIKWYREAELAHCRVAMLAATGWIFPE-IYHFPGNNVLGPDRFAELNPLLAYGKIPGAGGIQIVVTLLILELIRLNRSVRGDGPPGDIGLGQGEGRWNPFGFKYTEEQY 594
ERS A+P+DPYPEGLDG M GDVGFDPAGFANNPP W+ G G + + WYREAELAH RVAMLA GW FPE YHFPGN + G D FAE NP+ A P G IQI + + +E+ R+ +RGD PGD+ LGQ G NPFG Y +++Y
Sbjct: 40 ERSKALPMDPYPEGLDGTMAGDVGFDPAGFANNPPKKWLYGGGENS---LDWYREAELAHGRVAMLATVGWFFPETFYHFPGNEIYGQDIFAEANPIKALSVAPAGGLIQIALVIFFVEVWRIKNVIRGDRAPGDLNLGQ-RGAINPFGLNYDDDEY 192
BLAST of mRNA_H-elongata_contig47809.11916.1 vs. uniprot
Match: A0A0G4ELJ2_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4ELJ2_VITBC) HSP 1 Score: 181 bits (459), Expect = 1.520e-53 Identity = 89/162 (54.94%), Postives = 110/162 (67.90%), Query Frame = 1
Query: 130 ERSVAIPIDPYPEGLDGEMVGDVGFDPAGFANN-PPSWVSGEGSGTAARIKWYREAELAHCRVAMLAATGWIFPEIYHFPGNNVLGPDRFAELNPLLAYGKIPGAGGIQIVVTLLILELIRLNRSVRGDGPPGDIGLGQGEGRWNPFGFKYTEEQYREKQLQ 612
+RS+A+P+D P LDG + GD GFDP GF+NN P +W+ G G +KWYREAEL H RVAMLAA GWIFPEI+H PGN +G D FAE NP A +P G QI T+ +E RL R VRG+ GD+GLGQGEGRWNPFGF + E++Y Q++
Sbjct: 46 DRSLALPMDKRPPNLDGSLPGDFGFDPVGFSNNLPRTWLIG---GDERSLKWYREAELVHSRVAMLAALGWIFPEIWHLPGNAAVGVDAFAETNPWKALTTVPKEGLWQIAGTVSAIEFFRLRRVVRGEKEAGDLGLGQGEGRWNPFGFAFDEDEYYRMQVR 204
BLAST of mRNA_H-elongata_contig47809.11916.1 vs. uniprot
Match: F0Y1D8_AURAN (Uncharacterized protein LHC9 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y1D8_AURAN) HSP 1 Score: 162 bits (409), Expect = 3.260e-46 Identity = 82/149 (55.03%), Postives = 101/149 (67.79%), Query Frame = 1
Query: 172 LDGEMVGDVGFDPAGFANNPPS--WVSGEGSGTAARIKWYREAELAHCRVAMLAATGWIFPEIYHFPGNNVLGPDRFAELNPLLAYGKIPGAGGIQIVVTLLILELIRLNRSVRGDGPPGDIGLGQGEGRWNPFGFKYTEEQYREKQLQ 612
LDG +VGDVGFDP GF+ P W EG G+ +K +REAEL H R+A LA GWIFPE+YHFPG + D FA++NP A IP AG +QI+ + LE++R+NR PGD+GLGQGEGRWNPFGF YT E+Y +KQLQ
Sbjct: 52 LDGSLVGDVGFDPLGFSKYAPGAWWQGDEGDGS---LKIFREAELMHGRIAQLACLGWIFPELYHFPGKD----DAFAKMNPYEAVDAIPSAGWLQILAFMSSLEILRVNRLKDPAYIPGDLGLGQGEGRWNPFGFDYTAEEYYDKQLQ 193
BLAST of mRNA_H-elongata_contig47809.11916.1 vs. uniprot
Match: A0A6S8TCV5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8TCV5_9STRA) HSP 1 Score: 152 bits (385), Expect = 1.320e-42 Identity = 83/161 (51.55%), Postives = 103/161 (63.98%), Query Frame = 1
Query: 136 SVAIPIDPYPEGLDGEMVGDVGFDPAGFANNPPS--WVSGEGSGTAARIKWYREAELAHCRVAMLAATGWIFPEIYHFPGNNVLGPDRFAELNPLLAYGKIPGAGGIQIVVTLLILELIRLNRSVRGDGPPGDIGLGQGEGRWNPFGFKYTEEQYREKQLQ 612
SVA+P P LDG +VGDVGFDP GF+ P WV EG G+ +K +REAEL H R+A LA GW+FPEI H+PG + + F ++NP A IP AG QI+ ++ E+ R+N+ PGD GLGQG GRWNPFGF YT E+YREKQLQ
Sbjct: 41 SVALPWTTTP--LDGSLVGDVGFDPLGFSKYAPGAWWVGDEGDGS---LKIFREAELMHGRIAQLACLGWVFPEIAHWPGKD----NAFGKMNPFDALDAIPKAGWYQILGFMVACEVWRINKLKDPSYMPGDSGLGQGPGRWNPFGFNYTPEEYREKQLQ 192
BLAST of mRNA_H-elongata_contig47809.11916.1 vs. uniprot
Match: A0A6S8TQ14_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8TQ14_9STRA) HSP 1 Score: 149 bits (377), Expect = 2.330e-41 Identity = 81/161 (50.31%), Postives = 99/161 (61.49%), Query Frame = 1
Query: 136 SVAIPIDPYPEGLDGEMVGDVGFDPAGFANNPPS--WVSGEGSGTAARIKWYREAELAHCRVAMLAATGWIFPEIYHFPGNNVLGPDRFAELNPLLAYGKIPGAGGIQIVVTLLILELIRLNRSVRGDGPPGDIGLGQGEGRWNPFGFKYTEEQYREKQLQ 612
SVA+P LDG +VGDVGFDP GF+ P W EG G+ +K +REAEL H R+A LA GW+FPEI HFPG + F ++NP A IP AG QI+ + LE+ R+N+ PGD+ LGQG GRWNPFGF YT E+Y EKQLQ
Sbjct: 47 SVALPF--TTTNLDGSLVGDVGFDPLGFSKYAPGAWWQGDEGDGS---LKIFREAELMHGRIAQLACLGWVFPEIAHFPGKD----GAFGKMNPFEAVDAIPNAGWYQILAFMASLEVYRVNKLKDPAYVPGDLSLGQGPGRWNPFGFDYTPEEYAEKQLQ 198 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47809.11916.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig47809.11916.1 >prot_H-elongata_contig47809.11916.1 ID=prot_H-elongata_contig47809.11916.1|Name=mRNA_H-elongata_contig47809.11916.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=212bp MKSFAVAAASLCVLAPVAAFVPSAPSLVSVRSAPSTTKMASTPERSVAIPback to top mRNA from alignment at H-elongata_contig47809:1950..2585+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig47809.11916.1 ID=mRNA_H-elongata_contig47809.11916.1|Name=mRNA_H-elongata_contig47809.11916.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=636bp|location=Sequence derived from alignment at H-elongata_contig47809:1950..2585+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig47809:1950..2585+ >mRNA_H-elongata_contig47809.11916.1 ID=mRNA_H-elongata_contig47809.11916.1|Name=mRNA_H-elongata_contig47809.11916.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1272bp|location=Sequence derived from alignment at H-elongata_contig47809:1950..2585+ (Himanthalia elongata Himel1 dioecious)back to top |