mRNA_H-elongata_contig47807.11915.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig47807.11915.1
Unique NamemRNA_H-elongata_contig47807.11915.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig47807.11915.1 vs. uniprot
Match: D7FPE3_ECTSI (Set and mynd domain containing n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPE3_ECTSI)

HSP 1 Score: 703 bits (1814), Expect = 1.350e-246
Identity = 354/477 (74.21%), Postives = 406/477 (85.12%), Query Frame = 1 
Query:  358 ARRRGQIDPRFAVRRDLAQPRRGRGVFALEAIPAGTEILVAKQAAAVPRDRYRAAFCNRCLTLLDKESLIKCQRCEDHFCSEECVTAAGREGTHEATCAFVEGLGEEQLEKLEKGSSTAVTNKEILRLTMECHARRNAGLSDQDEWVEIEDLDLGTTGGGDNSRCGSEVGTLDADVIQEAEARLNSRSLVATAEEIQTVHRRLRRNFHAVQPEPLGRLVPSTVIAVFPAASLVNHSCEPNASFHARRAAPGGPPLEYVLTCSTDLVAGDEVCVSYLAHNVNATAKEGRRELLENVWGFSCNCRQCEDDAAPGSSAGDWRVTRMLQNMKALLENAQSRSVRETQAGLRCNLEQGLQVLLAGPDVSSRLQLQLALRIDEIAIRRRIHGSLRFRSAQELAERLVDVGLDSGYTADLRFTMHREALQWAADARVEGCFPRGEQMIRASRDSLEEAIKVASCFLGEGHPKTMALVECLRRFS 1788
            ARRRGQ+DPRF VRR+ A+P+RGRG+FA+EA+PAGTE+LVAKQAAA+PRDRYR AFC RCLTLLDK  LIKC+RCED FC +ECV AA  EGTHE TC  VEGLGEEQL +L +G + A T  +ILRLT+EC +RR AGLSD++EW+EI+DL L    GG     GS  GTL+ DVI+EA+ARLN   L  +AEEIQTVHRRLRRNFH VQPEPLGRL+P TV+ VFPAASLVNHSCEPNA FH+RRA P GPPLE  L C+TD+ AG+EVCVSYLAH  +A  KEGRRELL+NVWGFSC+C +CEDD  PG+S+GDWRVT+MLQN++ALLENAQ+RSVRE QAGLR  LEQGLQ+LLAGPD+SSRLQLQLA+RIDE+A RRR+HGSLRFRSAQELA+RLV  GLD+GYTADLRFTMHREAL+WAADARVEG + R EQ+ RASRDSLEEAIKVA+  LGEGHPKT ALVECLRRFS
Sbjct:  113 ARRRGQLDPRFQVRRNPARPKRGRGIFAVEAVPAGTEVLVAKQAAALPRDRYRPAFCRRCLTLLDKSLLIKCRRCEDRFCGKECVIAAAGEGTHEVTCGLVEGLGEEQLSELGRGDNAAATETDILRLTVECMSRRGAGLSDEEEWIEIDDLVLPEDEGGGE---GSGGGTLEPDVIREAQARLNDGGLEVSAEEIQTVHRRLRRNFHTVQPEPLGRLLPPTVVGVFPAASLVNHSCEPNACFHSRRAGPEGPPLELALRCTTDVSAGEEVCVSYLAHCADAATKEGRRELLQNVWGFSCDCPRCEDDTKPGASSGDWRVTKMLQNIEALLENAQNRSVREIQAGLRAQLEQGLQMLLAGPDLSSRLQLQLAMRIDEVATRRRMHGSLRFRSAQELADRLVRQGLDTGYTADLRFTMHREALRWAADARVEGSYRRAEQLTRASRDSLEEAIKVAAVCLGEGHPKTRALVECLRRFS 586
[Close]
BLAST of mRNA_H-elongata_contig47807.11915.1 vs. uniprot
Match: A0A6H5KH60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH60_9PHAE)

HSP 1 Score: 258 bits (660), Expect = 4.210e-77
Identity = 133/202 (65.84%), Postives = 159/202 (78.71%), Query Frame = 1 
Query:  358 ARRRGQIDPRFAVRRDLAQPRRGRGVFALEAIPAGTEILVAKQAAAVPRDRYRAAFCNRCLTLLDKESLIKCQRCEDHFCSEECVTAAGREGTHEATCAFVEGLGEEQLEKLEKGSSTAVTNKEILRLTMECHARRNAGLSDQDEWVEIEDLDLGTTGGGDNSRCGSEVGTLDADVIQEAEARLNSRSLVATAEEIQTVHRR 963
            ARRRGQ+DPRF VRR+ A+P+RGRG+FA+EA+PAGTE+LVA+QAAA+PRDRYR AFC RCLTLLDK  LIKC+RCED FC +ECV AA  EGTHE TC  VEGLGEEQL +L +G + A T  +ILRLT+EC +RR AGLSD++EW+EI+DL L    G      G   GTL+ DVI+EA+ARLN   L  +AEEIQTVHRR
Sbjct:  114 ARRRGQLDPRFQVRRNPARPKRGRGIFAVEAVPAGTEVLVARQAAALPRDRYRPAFCRRCLTLLDKSLLIKCRRCEDRFCGKECVIAAAGEGTHEVTCGMVEGLGEEQLSELGRGDNAAATETDILRLTVECMSRRGAGLSDEEEWIEIDDLVLPEDEGXXXXXXG---GTLEPDVIREAQARLNDGGLEVSAEEIQTVHRR 312
[Close]
BLAST of mRNA_H-elongata_contig47807.11915.1 vs. uniprot
Match: D7FPE5_ECTSI (SET and MYND domain containing 1b n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPE5_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 1.360e-29
Identity = 114/324 (35.19%), Postives = 157/324 (48.46%), Query Frame = 1 
Query:  358 ARRRGQIDPRFAVRRDLAQPRRGRGVFALEAIPAGTEILVAKQAAAVPRDRYRAAFCNRCLTLLDKE-SLIKCQRCEDHFCS--EECVTAAGREGTHE-ATCAFVEGLGEEQLEKLEKGSSTAVTNKEILRLTMECHARRNAGLSDQDEWVEIEDLDLGTTGGGDNSRCGSEVGTLDADVIQEAEARLNS-----RSLVATA---EEIQTVHRRLRRNFHAVQPEPLGRLVPSTVIAVFPAASLVNHSCEPNASFHA--RRAAPGGPPL-EYVLTCSTDLVAGDEVCVSYLAHNVNATAKEGRRELLENVWGFSCNCRQCEDDA 1284
            ARR   +D R  VR D   P+RGRG+FAL  IPAGTE++    AAAV  DR R   C+ CL   D   SL  C      FC+  ++  T  G  G H  ATC   + L           +++   +K+ LRL  +   RR AGL D  EW  +  L+       DN          +A  +  A A L+      ++LV T    E++Q ++RR+ RN H V P    +    +V  +FP  +LVNHSC PN  FH     ++P G P+ + VL    ++ AGDE+C SYL+          RR+LL   WGF C C +C  +A
Sbjct:   28 ARRTANLDARVEVRFD---PKRGRGLFALRDIPAGTEVMRVPAAAAVLLDRSRKGSCSGCLLPTDTVGSLEACHGFPLSFCAACKKATTVGGVSGVHNSATCELTKELNT-------ICATSGGIDKDSLRLAADVFVRRKAGLFDDSEWGLLNSLESH-----DN----------EAHTMSLAPAELHKCTRLFKTLVDTNISDEDVQAMYRRITRNAHTVSPNT-SKPGFGSVQGLFPCGALVNHSCLPNTFFHCVTESSSPEGRPVVKQVLRSIRNIRAGDELCYSYLSSGSAVGTVSERRDLLMG-WGFRCACARCLSEA 324
[Close]
BLAST of mRNA_H-elongata_contig47807.11915.1 vs. uniprot
Match: A0A7S1ANJ3_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1ANJ3_NOCSC)

HSP 1 Score: 63.5 bits (153), Expect = 3.080e-7
Identity = 33/106 (31.13%), Postives = 57/106 (53.77%), Query Frame = 1 
Query: 1033 VFPAASLVNHSCEPNASFHARRAAPGGPPLEYVLTCSTDLVAGDEVCVSYLAHNVNATAKEGRRELLENVWGFSCNCRQCEDDAAPGSSAGDWRVTRMLQNMKALL 1350
            VF   S +NHSCEPN +FH   +      +  ++  + D+  G+EVC+SYL  ++ A     RR   +  WGF+C+C  C+ D+A        R  + ++ +K+++
Sbjct:  167 VFDRVSRINHSCEPNVTFHVSWSEEYNTMINSIVA-ARDMELGEEVCISYLPLSMPAVQ---RRRDFQRHWGFTCDCLSCQRDSAESVVPVVSRAVQAVEIVKSII 268
[Close]
BLAST of mRNA_H-elongata_contig47807.11915.1 vs. uniprot
Match: UPI001E8D8843 (uncharacterized protein n=1 Tax=Emericellopsis atlantica TaxID=2614577 RepID=UPI001E8D8843)

HSP 1 Score: 61.6 bits (148), Expect = 1.380e-6
Identity = 35/108 (32.41%), Postives = 57/108 (52.78%), Query Frame = 1 
Query:  961 RLRRNFHAVQPEPLGRLVPSTVIAVFPAASLVNHSCEPNASFHARRAAPGGPPLEYVLTCSTDLVAGDEVCVSYLAHNVNATAKEGRRELLENVWGFSCNCRQCEDDA 1284
            R+R N  A+Q          T +AVFP  SL+NH C+PNA++     +     L   +T S  +  G E+ +SYL  +++    E R+  L ++WGF C+C  C+ ++
Sbjct:  203 RIRANAFALQMRS------GTYLAVFPNISLLNHDCDPNATYDFSEES-----LTQKITISKPIQPGSEIVISYLEPHLSL---EMRQSYLSSMWGFKCSCSTCQAES 296
[Close]
BLAST of mRNA_H-elongata_contig47807.11915.1 vs. uniprot
Match: A0A0F8UGD4_9EURO (SET domain-containing protein n=3 Tax=Aspergillus TaxID=5052 RepID=A0A0F8UGD4_9EURO)

HSP 1 Score: 59.7 bits (143), Expect = 8.170e-6
Identity = 40/112 (35.71%), Postives = 54/112 (48.21%), Query Frame = 1 
Query:  976 FHAVQPEPLGRLVPSTVIAVFPAASLVNHSCEPNASFHARRAAPGGPPLEYVLTCSTDLVAGDEVCVSYLAHNVNATAKEGRRELLENVWGFSCNCRQCEDDAAPGSSAGDW 1311
            FH +   P+ R       AV+P AS+ NHSC PN   H     P G     V T S D+ AG+E C+SY         K+ RRE L+ ++ F C C +C  +  PG +   W
Sbjct:  242 FHPLPTPPVDR-GEQFGAAVYPRASIANHSCCPNI-IHK----PDGYG-RMVFTASRDIEAGEECCISYFDMTQYIDVKD-RREHLQTLFRFVCGCPRCAAEEVPGDNDLQW 345
[Close]
BLAST of mRNA_H-elongata_contig47807.11915.1 vs. uniprot
Match: A0A194WA08_9PEZI (SET domain-containing protein n=1 Tax=Valsa mali TaxID=105487 RepID=A0A194WA08_9PEZI)

HSP 1 Score: 57.4 bits (137), Expect = 4.420e-5
Identity = 28/80 (35.00%), Postives = 44/80 (55.00%), Query Frame = 1 
Query: 1033 VFPAASLVNHSCEPNASFHARRAAPGGPPLEYVLTCSTDLVAGDEVCVSYLAHNVNATAKEGRRELLENVWGFSCNCRQC 1272
            V+P+AS  NH+C PN + +            +V T + D++AG+E+ +SYL  +     +  R+E L+ VWGF C C  C
Sbjct:  273 VWPSASYFNHNCRPNVTKNR-------VGKTWVFTATADVLAGNELTISYLGGDETKLDRPDRQERLKKVWGFDCACPCC 345
[Close]
BLAST of mRNA_H-elongata_contig47807.11915.1 vs. uniprot
Match: A0A8H3LMC9_9GLOM (Histone-lysine N-methyltransferase ASHR1 isoform X1 n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A8H3LMC9_9GLOM)

HSP 1 Score: 57.8 bits (138), Expect = 5.580e-5
Identity = 76/290 (26.21%), Postives = 126/290 (43.45%), Query Frame = 1 
Query:  424 GRGVFALEAIPAGTEILVAKQAAAVPRDRYRAAFCNRCLTLLDKESLIKCQRCED-HFCSEECVTAAGREGTHEATCAFVEGLGEEQLEKLEKGSSTAVTNKEILRLTMECHARRNAGLSDQDEWVEIEDLDLGTTGGGDNSRCGSEVGTLD--ADVIQEA---EARLNSRSLVATAEEIQTVHRRLRRNFHAVQPEPLGRLVPSTVIAVFPAASLVNHSCEPNASFHARRAAPGGPPLEYVLTCSTDLVAGDEVCVSYLAHNVNATAKEGRRELLENVWGFSCNCRQCE 1275
            GRG+FAL+ IP+GT ++     A+V  D   +  C+ C     K  L+ C  C+  H+CS+EC         HE    FV         K+++   T++      RL      RR   +SD   + EIE+L         N     ++ T    A V++E    +A LNS  ++        +  R   N  ++     G ++P+   A++P ASL NHSC PN      R        + ++     ++   E+ ++Y   +++   +E R+EL +  + F C C  CE
Sbjct:  127 GRGIFALQNIPSGTLVMEDISYASVVDDANLSTTCSYCFMKGGK--LLFCSACKIVHYCSKECQRNDWANHQHECR-VFV---------KVQRKPPTSI------RLLCRILMRR---MSDPASFKEIENLQSNR-----NLFKQEQIETFAQMAMVVRECVPKDAILNSSDMIE-------LFCRFTENSFSILD---GEMIPNGA-AIYPNASLFNHSCRPNCIVVFER-------TKLMVRSIEPIMKDQEITINYT--DLSQPGEERRKELQDRYF-FLCRCGLCE 369
[Close]
BLAST of mRNA_H-elongata_contig47807.11915.1 vs. uniprot
Match: A0A0C3GJY9_9PEZI (MYND-type zinc finger protein samB n=1 Tax=Oidiodendron maius Zn TaxID=913774 RepID=A0A0C3GJY9_9PEZI)

HSP 1 Score: 57.4 bits (137), Expect = 7.150e-5
Identity = 42/111 (37.84%), Postives = 57/111 (51.35%), Query Frame = 1 
Query:  964 LRRNFHAVQPEPLGRLV----PSTVIA---VFPAASLVNHSCEPNASFHARRAAPGGPPLEYVLTCSTDLVAGDEVCVSYLAH-NVNATAKEGRRELLENVWGFSCNCRQC 1272
            ++  FH ++P  LGR      P  V A     P AS++NHSC+PNA +H       G  L   L  S  L  G+E+CVSY+ + N N      R++ L+  WGF CNC  C
Sbjct:  239 IKMTFHLLRP--LGRSYKCNSPYVVKAGRCFDPFASMINHSCDPNALWHFE-----GRKLR--LVASQILSPGEEICVSYIKYTNYNV-----RQQELQRGWGFICNCDVC 335
[Close]
BLAST of mRNA_H-elongata_contig47807.11915.1 vs. uniprot
Match: A0A0U5G8U2_ASPCI (SET domain-containing protein n=1 Tax=Aspergillus calidoustus TaxID=454130 RepID=A0A0U5G8U2_ASPCI)

HSP 1 Score: 56.6 bits (135), Expect = 9.300e-5
Identity = 31/94 (32.98%), Postives = 43/94 (45.74%), Query Frame = 1 
Query: 1030 AVFPAASLVNHSCEPNASFHARRAAPGGPPLEYVLTCSTDLVAGDEVCVSYLAHNVNATAKEGRRELLENVWGFSCNCRQCEDDAAPGSSAGDW 1311
            AV+P AS+ NHSC PN      + A        V T   D+ AG+E C+SY       +  E RR  L  ++ F C C +C ++   G     W
Sbjct:  299 AVYPRASIANHSCCPNIIHKPDKTA------RMVFTAGRDIAAGEECCISYFDMTQYVSLSE-RRAHLSGLFRFKCGCPRCTEEDVDGEEGMGW 385
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47807.11915.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7FPE3_ECTSI1.350e-24674.21Set and mynd domain containing n=1 Tax=Ectocarpus ... [more]
A0A6H5KH60_9PHAE4.210e-7765.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPE5_ECTSI1.360e-2935.19SET and MYND domain containing 1b n=1 Tax=Ectocarp... [more]
A0A7S1ANJ3_NOCSC3.080e-731.13Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
UPI001E8D88431.380e-632.41uncharacterized protein n=1 Tax=Emericellopsis atl... [more]
A0A0F8UGD4_9EURO8.170e-635.71SET domain-containing protein n=3 Tax=Aspergillus ... [more]
A0A194WA08_9PEZI4.420e-535.00SET domain-containing protein n=1 Tax=Valsa mali T... [more]
A0A8H3LMC9_9GLOM5.580e-526.21Histone-lysine N-methyltransferase ASHR1 isoform X... [more]
A0A0C3GJY9_9PEZI7.150e-537.84MYND-type zinc finger protein samB n=1 Tax=Oidiode... [more]
A0A0U5G8U2_ASPCI9.300e-532.98SET domain-containing protein n=1 Tax=Aspergillus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig47807contigH-elongata_contig47807:90..3812 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score708.8
Seed ortholog evalue2.2e-201
Seed eggNOG ortholog2880.D7FPE3
KEGG koko:K11426
EggNOG free text desc.SET domain
EggNOG OGsCOG2940@1,KOG2084@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Exons5
Model size2036
Cds size1743
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930788.890762-UTR-H-elongata_contig47807:89..3131622930788.890762-UTR-H-elongata_contig47807:89..313Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47807 90..313 -
1691679570.798731-UTR-H-elongata_contig47807:89..3131691679570.798731-UTR-H-elongata_contig47807:89..313Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47807 90..313 -
1622930788.977938-UTR-H-elongata_contig47807:3041..30511622930788.977938-UTR-H-elongata_contig47807:3041..3051Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47807 3042..3051 -
1691679570.8464603-UTR-H-elongata_contig47807:3041..30511691679570.8464603-UTR-H-elongata_contig47807:3041..3051Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47807 3042..3051 -
1622930788.9940424-UTR-H-elongata_contig47807:3753..38121622930788.9940424-UTR-H-elongata_contig47807:3753..3812Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47807 3754..3812 -
1691679570.8557003-UTR-H-elongata_contig47807:3753..38121691679570.8557003-UTR-H-elongata_contig47807:3753..3812Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47807 3754..3812 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930788.9129434-CDS-H-elongata_contig47807:313..7551622930788.9129434-CDS-H-elongata_contig47807:313..755Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47807 314..755 -
1691679570.8098652-CDS-H-elongata_contig47807:313..7551691679570.8098652-CDS-H-elongata_contig47807:313..755Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47807 314..755 -
1622930788.9319503-CDS-H-elongata_contig47807:988..11431622930788.9319503-CDS-H-elongata_contig47807:988..1143Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47807 989..1143 -
1691679570.8177798-CDS-H-elongata_contig47807:988..11431691679570.8177798-CDS-H-elongata_contig47807:988..1143Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47807 989..1143 -
1622930788.948594-CDS-H-elongata_contig47807:1528..17811622930788.948594-CDS-H-elongata_contig47807:1528..1781Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47807 1529..1781 -
1691679570.8267663-CDS-H-elongata_contig47807:1528..17811691679570.8267663-CDS-H-elongata_contig47807:1528..1781Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47807 1529..1781 -
1622930788.9655004-CDS-H-elongata_contig47807:2148..30411622930788.9655004-CDS-H-elongata_contig47807:2148..3041Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47807 2149..3041 -
1691679570.8366275-CDS-H-elongata_contig47807:2148..30411691679570.8366275-CDS-H-elongata_contig47807:2148..3041Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47807 2149..3041 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig47807.11915.1prot_H-elongata_contig47807.11915.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig47807 314..3041 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig47807.11915.1

>prot_H-elongata_contig47807.11915.1 ID=prot_H-elongata_contig47807.11915.1|Name=mRNA_H-elongata_contig47807.11915.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=581bp
MRLPGQIQAQTKKETPTVMAATSRSSGACRRPSGGRPSLTNNGIKVKTAV
DSRHFRTGRDFDSSATPRAFLSASGRGDKNKGSIGNNSRRGYGGMEARRR
GQIDPRFAVRRDLAQPRRGRGVFALEAIPAGTEILVAKQAAAVPRDRYRA
AFCNRCLTLLDKESLIKCQRCEDHFCSEECVTAAGREGTHEATCAFVEGL
GEEQLEKLEKGSSTAVTNKEILRLTMECHARRNAGLSDQDEWVEIEDLDL
GTTGGGDNSRCGSEVGTLDADVIQEAEARLNSRSLVATAEEIQTVHRRLR
RNFHAVQPEPLGRLVPSTVIAVFPAASLVNHSCEPNASFHARRAAPGGPP
LEYVLTCSTDLVAGDEVCVSYLAHNVNATAKEGRRELLENVWGFSCNCRQ
CEDDAAPGSSAGDWRVTRMLQNMKALLENAQSRSVRETQAGLRCNLEQGL
QVLLAGPDVSSRLQLQLALRIDEIAIRRRIHGSLRFRSAQELAERLVDVG
LDSGYTADLRFTMHREALQWAADARVEGCFPRGEQMIRASRDSLEEAIKV
ASCFLGEGHPKTMALVECLRRFSSPLHNSV*
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mRNA from alignment at H-elongata_contig47807:90..3812-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig47807.11915.1 ID=mRNA_H-elongata_contig47807.11915.1|Name=mRNA_H-elongata_contig47807.11915.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3723bp|location=Sequence derived from alignment at H-elongata_contig47807:90..3812- (Himanthalia elongata Himel1 dioecious)
CGGCGAGACATAACTGGTTGGGTACGTTGCTCGCCTTGGGGGTCGAACGA
CAAAATAACGTGAGTATTTTGAGACAAAGACCGCTGCAAGTTAGTATGGT
AGTATAATCACCTGTGTGTTTGCCTTTCGCTGAACCCGTTGCTTTTGGTT
CTAACAGGGCAGACACGTTCGTCGGATGTGTTATTCTGTATGCGGTAGGC
AGTTGATCCAAGATTGTCCGTGGCTCGCTGTTGTCCTGTTGCCCTCAACT
TAGCGGGGTAAATCCTCCCCAGCTTTTGCGCCAATACTAACGCAACGAAC
CTTCTCTCCGAGGTAAAGGATTTGCTGAAGGCAGCGAGTATTTTGCAGAG
CACCGATCCCTTCCGTACCGTGAAGACAAGTTGACTCGCAAGGCCTGGGG
TTTGAAGGTAGCCCTTTAGCGGCAAGCCGCATGCATAGATCTCGAGAACG
ATCGCTGGGTGTGATACGCCAAACTGACAGGCCCGCCAAGTGTGTGAAGG
AACGTTTAATGCTGTAGGACACATCGTTCATTAACAACAGTGCACAAAGC
CGTGAACGTCACGATGTCCGTGCCACATCCCGATTTTTCCCTCACCTGTG
CGGTGGAACGTCGCTTGACCTCGCTCTTAAATATAGTAATAATATCAGCC
AAGATACTCCTGTTCAGGCAAAGGAGCCCTCCTTGGAGGAAATTGCAAAA
TCTTGACCTTCATCATTACGTTTTGCGCGCGTTTTCGTTTGCCATCGTTA
TTTGTCGTCAGGCGCGACAGGATGAGGTTACCCGGTCAAATTCAAGCCCA
AACGAAAAAAGAAACCCCAACGGTAATGGCGGCGACTTCTCGAAGCAGCG
GCGCCTGCAGACGTCCATCTGGAGGCAGGCCTTCCCTCACCAATAACGGG
ATCAAAGTTAAGACTGCAGTGGACAGCCGTCACTTCCGGACTGGAAGGGA
CTTTGATTCCAGCGCCACCCCCCGGGCCTTTCTCTCCGCAAGCGGCAGGG
GAGATAAAAACAAGGGCAGCATCGGCAATAACAGCCGCCGAGGCTACGGC
GGAATGGAAGCGCGGAGGCGTGGTCAAATCGACCCGCGCTTCGCCGTGCG
GAGAGACCTCGCACAACCGCGCCGCGGGAGGGGGGTATTTGCCCTCGAGG
CGATACCGGCGGGCACGGAAATCTTAGTAGCGAAGCAGGCAGCCGCGGTG
CCCAGAGACCGCTATCGGGCGGCCTTCTGCAATCGCTGTCTGACCCTGCT
GGACAAGGAGTCGCTCATCAAGTGTCAGCGCTGCGAGGATCACTTCTGTA
GCGAGGAGTGCGTTACCGCGGCCGGGAGAGAGGGAACTCACGAGGCAACG
TGTGCGTTTGTCGAGGGCCTCGGGGAGGAGCAGTTGGAGAAGCTGGAGAA
AGGGTCCTCCACGGCCGTCACGAACAAGGAGATTTTGCGTCTCACCATGG
AGTGTCACGCCAGACGGAACGCTGGTCTGAGCGACCAGGACGAGTGGGTG
GAGATAGAAGACCTCGATCTAGGAACTACGGGCGGCGGCGACAACAGTAG
GTGCGGTTCGGAGGTTGGGACGCTGGACGCTGACGTAATTCAGGAGGCGG
AGGCGAGATTGAATTCAAGGAGTCTGGTGGCAACTGCGGAGGAGATACAG
ACCGTGCACCGCAGGTGATTTTGGGATGACTTTCCGAACTGGTTGCCTCG
TTGTCTCTATCATACCCTCGGTGATGCATATCAATTCAATTGTTTGGCTG
GCGAACTACTGGGTACGCGCTACGTTTTACGTGAGTCGTGGTTCTGAGAG
ATGCGATGCCTCGGATACGCTTCCTGCGCGCGGCCAAGGCGGCAAAATGA
GCTACTGTTTCACAATTTGTAATATTTGCCTGCCGCCTGTGAAAAAACAC
CGAAATAATGCGGCGGAAACAAAAACGAAGGCACAACACCGTCTGCGCTC
TTGCCCCCCCGCTTTAGCTACAGTACACCGCGATATCTCGCTTTTTTTTT
TTTTACCGATCCCGTGAACGTGTGTGCGCAGACTACGGCGCAATTTTCAC
GCGGTCCAGCCAGAACCTCTCGGCAGGCTGGTACCGTCGACCGTGATTGC
CGTCTTTCCGGCCGCGTCTCTAGTGAACCATTCCTGCGAGCCGAATGCAA
GTTTTCACGCGAGGCGCGCGGCCCCAGGAGGTCCTCCGCTCGAGTACGTC
CTGACGTGCTCGACAGACTTGGTCGCTGGCGATGAGGTCTGCGTCTCGTA
CCTTGCGCACAACGTCAACGCCACAGCTAAAGAGGTGAACGAGGGGGGGA
GGCGGGGGACTTGAGGTTCCTCTACGTTACAAATGTCAAGCTTGATTATT
CAGTCCAGTATGCTGCTGTTACTTGGCTGTTGTTGATGCTTCTTTGGCTG
CTGCTGTTTTTGTTTCTGCTTCTTATGTTTCTTATTATATTATGATGGTG
ATTTATGATGATGATTGTGGTGGTTCTCTCGTTTCATGCTGCTGTCGCCT
TAATGCACGTTACGCTTGAAATTGAGAACAAACGTGAAGCACGCAAGATA
CGAGGGCGTGCTCACACAGCAGTGCACCAAGCCTTCTATCGCACGCCTCC
GTTTGTACTTGACAGTCCGTTTCCCGCGACTGAAGTGCGCCTTGAAACGA
TTCGCTGTGGCGCCTGCAGGGACGTCGAGAGTTGTTGGAGAACGTGTGGG
GTTTCTCCTGTAATTGCCGTCAGTGCGAGGACGACGCCGCCCCTGGCTCT
TCCGCGGGGGACTGGAGAGTGACCCGAATGCTCCAGAACATGAAAGCTCT
GTTGGAGAACGCTCAAAGTCGAAGGTAAGAGAGAAATATTTTCCCCTTCG
CGGCGGACGAAAAATGAAAAGAGGTCGTGAGGATAGTGATATTTCGCTGA
GCTTTTCTCGATCGGCAGCAACACCAGTGCAATATCCGACCCTGTAAGAT
TACTTGCGGGTAGCTTGTAACGTGTTCACGAGACGATATGTTGTTGCAGA
CTCCCCAATTCAACCCCACACGCCTCCTCCCGCCTTACGCACCATGCTCC
CTGTCAGCGTCCGAGAAACCCAGGCTGGGCTACGTTGTAACCTGGAACAG
GGCCTGCAGGTTTTGCTCGCCGGGCCTGACGTATCCTCTCGCCTCCAGCT
CCAGCTCGCGTTGCGCATCGACGAGATAGCTATCCGACGGCGCATTCACG
GGTCTCTCCGCTTCCGTTCAGCGCAGGAGCTCGCGGAGAGGTTAGTAGAC
GTTGGTCTGGACAGCGGCTACACGGCAGATTTGCGCTTCACTATGCACCG
TGAGGCCTTACAGTGGGCGGCGGATGCCAGGGTCGAGGGTTGCTTTCCCA
GAGGGGAGCAGATGATACGAGCGTCGCGCGATAGTCTGGAGGAAGCGATC
AAGGTCGCTAGTTGTTTTTTGGGAGAGGGACACCCCAAGACAATGGCGTT
GGTGGAGTGCTTGCGACGCTTCAGCTCTCCGTTGCATAACAGCGTGTAGC
CCGTGGTCCGAGATGAATGCAGTGAAGGAAAATGAACGAAGAAAAATTAT
GGCCCTAGAGATTTTAAATTCTCATCGTGTCTCCACAATGGTGGGACGAG
GAAATCTACGTCTTGAGTTTAAAAAAAAACAGAATCAAAGGGGGAGACAT
CGGTAAATGAGTGACTGCTGGAAGGGAAGTGAGGAGGAGGCGGAGCGATG
GAGGGGGAAGGCCGAGTTTTGGT
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Coding sequence (CDS) from alignment at H-elongata_contig47807:90..3812-

>mRNA_H-elongata_contig47807.11915.1 ID=mRNA_H-elongata_contig47807.11915.1|Name=mRNA_H-elongata_contig47807.11915.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3486bp|location=Sequence derived from alignment at H-elongata_contig47807:90..3812- (Himanthalia elongata Himel1 dioecious)
ATGAGGTTACCCGGTCAAATTCAAGCCCAAACGAAAAAAGAAACCCCAAC
GGTAATGGCGGCGACTTCTCGAAGCAGCGGCGCCTGCAGACGTCCATCTG
GAGGCAGGCCTTCCCTCACCAATAACGGGATCAAAGTTAAGACTGCAGTG
GACAGCCGTCACTTCCGGACTGGAAGGGACTTTGATTCCAGCGCCACCCC
CCGGGCCTTTCTCTCCGCAAGCGGCAGGGGAGATAAAAACAAGGGCAGCA
TCGGCAATAACAGCCGCCGAGGCTACGGCGGAATGGAAGCGCGGAGGCGT
GGTCAAATCGACCCGCGCTTCGCCGTGCGGAGAGACCTCGCACAACCGCG
CCGCGGGAGGGGGGTATTTGCCCTCGAGGCGATACCGGCGGGCACGGAAA
TCTTAGTAGCGAAGCAGGCAGCCGCGGTGCCCAGAGACCGCTATCGGGCG
GCCTTCTGCAATCGCTGTCTGACCCTGCTGGACAAGGAGTCGCTCATCAA
GTGTCAGCGCTGCGAGGATCACTTCTGTAGCGAGGAGTGCGTTACCGCGG
CCGGGAGAGAGGGAACTCACGAGGCAACGTGTGCGTTTGTCGAGGGCCTC
GGGGAGGAGCAGTTGGAGAAGCTGGAGAAAGGGTCCTCCACGGCCGTCAC
GAACAAGGAGATTTTGCGTCTCACCATGGAGTGTCACGCCAGACGGAACG
CTGGTCTGAGCGACCAGGACGAGTGGGTGGAGATAGAAGACCTCGATCTA
GGAACTACGGGCGGCGGCGACAACAGTAGGTGCGGTTCGGAGGTTGGGAC
GCTGGACGCTGACGTAATTCAGGAGGCGGAGGCGAGATTGAATTCAAGGA
GTCTGGTGGCAACTGCGGAGGAGATACAGACCGTGCACCGCAGATGAGGT
TACCCGGTCAAATTCAAGCCCAAACGAAAAAAGAAACCCCAACGGTAATG
GCGGCGACTTCTCGAAGCAGCGGCGCCTGCAGACGTCCATCTGGAGGCAG
GCCTTCCCTCACCAATAACGGGATCAAAGTTAAGACTGCAGTGGACAGCC
GTCACTTCCGGACTGGAAGGGACTTTGATTCCAGCGCCACCCCCCGGGCC
TTTCTCTCCGCAAGCGGCAGGGGAGATAAAAACAAGGGCAGCATCGGCAA
TAACAGCCGCCGAGGCTACGGCGGAATGGAAGCGCGGAGGCGTGGTCAAA
TCGACCCGCGCTTCGCCGTGCGGAGAGACCTCGCACAACCGCGCCGCGGG
AGGGGGGTATTTGCCCTCGAGGCGATACCGGCGGGCACGGAAATCTTAGT
AGCGAAGCAGGCAGCCGCGGTGCCCAGAGACCGCTATCGGGCGGCCTTCT
GCAATCGCTGTCTGACCCTGCTGGACAAGGAGTCGCTCATCAAGTGTCAG
CGCTGCGAGGATCACTTCTGTAGCGAGGAGTGCGTTACCGCGGCCGGGAG
AGAGGGAACTCACGAGGCAACGTGTGCGTTTGTCGAGGGCCTCGGGGAGG
AGCAGTTGGAGAAGCTGGAGAAAGGGTCCTCCACGGCCGTCACGAACAAG
GAGATTTTGCGTCTCACCATGGAGTGTCACGCCAGACGGAACGCTGGTCT
GAGCGACCAGGACGAGTGGGTGGAGATAGAAGACCTCGATCTAGGAACTA
CGGGCGGCGGCGACAACAGTAGGTGCGGTTCGGAGGTTGGGACGCTGGAC
GCTGACGTAATTCAGGAGGCGGAGGCGAGATTGAATTCAAGGAGTCTGGT
GGCAACTGCGGAGGAGATACAGACCGTGCACCGCAGACTACGGCGCAATT
TTCACGCGGTCCAGCCAGAACCTCTCGGCAGGCTGGTACCGTCGACCGTG
ATTGCCGTCTTTCCGGCCGCGTCTCTAGTGAACCATTCCTGCGAGCCGAA
TGCAAGTTTTCACGCGAGGCGCGCGGCCCCAGGAGGTCCTCCGCTCGAGT
ACGTCCTGACGTGCTCGACAGACTTGGTCGCTGGCGATGAGGTCTGCGTC
TCGTACCTTGCGCACAACGTCAACGCCACAGCTAAAGAGACTACGGCGCA
ATTTTCACGCGGTCCAGCCAGAACCTCTCGGCAGGCTGGTACCGTCGACC
GTGATTGCCGTCTTTCCGGCCGCGTCTCTAGTGAACCATTCCTGCGAGCC
GAATGCAAGTTTTCACGCGAGGCGCGCGGCCCCAGGAGGTCCTCCGCTCG
AGTACGTCCTGACGTGCTCGACAGACTTGGTCGCTGGCGATGAGGTCTGC
GTCTCGTACCTTGCGCACAACGTCAACGCCACAGCTAAAGAGGGACGTCG
AGAGTTGTTGGAGAACGTGTGGGGTTTCTCCTGTAATTGCCGTCAGTGCG
AGGACGACGCCGCCCCTGGCTCTTCCGCGGGGGACTGGAGAGTGACCCGA
ATGCTCCAGAACATGAAAGCTCTGTTGGAGAACGCTCAAAGTCGAAGGGA
CGTCGAGAGTTGTTGGAGAACGTGTGGGGTTTCTCCTGTAATTGCCGTCA
GTGCGAGGACGACGCCGCCCCTGGCTCTTCCGCGGGGGACTGGAGAGTGA
CCCGAATGCTCCAGAACATGAAAGCTCTGTTGGAGAACGCTCAAAGTCGA
AGCGTCCGAGAAACCCAGGCTGGGCTACGTTGTAACCTGGAACAGGGCCT
GCAGGTTTTGCTCGCCGGGCCTGACGTATCCTCTCGCCTCCAGCTCCAGC
TCGCGTTGCGCATCGACGAGATAGCTATCCGACGGCGCATTCACGGGTCT
CTCCGCTTCCGTTCAGCGCAGGAGCTCGCGGAGAGGTTAGTAGACGTTGG
TCTGGACAGCGGCTACACGGCAGATTTGCGCTTCACTATGCACCGTGAGG
CCTTACAGTGGGCGGCGGATGCCAGGGTCGAGGGTTGCTTTCCCAGAGGG
GAGCAGATGATACGAGCGTCGCGCGATAGTCTGGAGGAAGCGATCAAGGT
CGCTAGTTGTTTTTTGGGAGAGGGACACCCCAAGACAATGGCGTTGGTGG
AGTGCTTGCGACGCTTCAGCTCTCCGTTGCATAACAGCGTGTAGCGTCCG
AGAAACCCAGGCTGGGCTACGTTGTAACCTGGAACAGGGCCTGCAGGTTT
TGCTCGCCGGGCCTGACGTATCCTCTCGCCTCCAGCTCCAGCTCGCGTTG
CGCATCGACGAGATAGCTATCCGACGGCGCATTCACGGGTCTCTCCGCTT
CCGTTCAGCGCAGGAGCTCGCGGAGAGGTTAGTAGACGTTGGTCTGGACA
GCGGCTACACGGCAGATTTGCGCTTCACTATGCACCGTGAGGCCTTACAG
TGGGCGGCGGATGCCAGGGTCGAGGGTTGCTTTCCCAGAGGGGAGCAGAT
GATACGAGCGTCGCGCGATAGTCTGGAGGAAGCGATCAAGGTCGCTAGTT
GTTTTTTGGGAGAGGGACACCCCAAGACAATGGCGTTGGTGGAGTGCTTG
CGACGCTTCAGCTCTCCGTTGCATAACAGCGTGTAG
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