mRNA_H-elongata_contig4779.11912.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig4779.11912.1
Unique NamemRNA_H-elongata_contig4779.11912.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig4779.11912.1 vs. uniprot
Match: D8LEP1_ECTSI (WD-repeat protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEP1_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 6.140e-16
Identity = 38/62 (61.29%), Postives = 50/62 (80.65%), Query Frame = 1
Query:    1 FADPVTETSAPGYIAAILRPMDLGTMRRRAEGGVYGSMDMLQNDLVLVVANFLSYDAPDTIF 186
            FA+PV+E +APGYI+AILRPMDLGT+R R EG  Y  +  LQ+DL+LVVAN  +Y++P T+F
Sbjct: 1870 FAEPVSEAAAPGYISAILRPMDLGTVRGRLEGRRYRDVSELQDDLLLVVANCFTYNSPGTMF 1931          
BLAST of mRNA_H-elongata_contig4779.11912.1 vs. uniprot
Match: A0A6H5KTA2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTA2_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 6.150e-16
Identity = 38/62 (61.29%), Postives = 51/62 (82.26%), Query Frame = 1
Query:    1 FADPVTETSAPGYIAAILRPMDLGTMRRRAEGGVYGSMDMLQNDLVLVVANFLSYDAPDTIF 186
            FA+PV+E++APGYI+AILRPMDLGT+R R EG  Y  +  LQ+DL+LVVAN  +Y++P T+F
Sbjct: 1898 FAEPVSESAAPGYISAILRPMDLGTVRGRLEGRRYRDVAELQDDLLLVVANCFTYNSPGTLF 1959          
BLAST of mRNA_H-elongata_contig4779.11912.1 vs. uniprot
Match: A0A061QRC8_9CHLO (Bromodomain-containing protein 7/9 (Fragment) n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QRC8_9CHLO)

HSP 1 Score: 60.1 bits (144), Expect = 4.860e-9
Identity = 29/62 (46.77%), Postives = 38/62 (61.29%), Query Frame = 1
Query:    1 FADPVTETSAPGYIAAILRPMDLGTMRRRAEGGVYGSMDMLQNDLVLVVANFLSYDAPDTIF 186
            F +PVTE  APGY   I  PMD  T+R R     Y S D L+ DLVL+  N ++Y+ P+T+F
Sbjct:  271 FREPVTEDLAPGYFDVISNPMDFTTIRARISEERYASWDELEEDLVLMFDNAMTYNGPETLF 332          
BLAST of mRNA_H-elongata_contig4779.11912.1 vs. uniprot
Match: A0A4C1ZGT1_EUMVA (Bromodomain-containing protein 8 n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1ZGT1_EUMVA)

HSP 1 Score: 58.9 bits (141), Expect = 1.290e-8
Identity = 26/59 (44.07%), Postives = 40/59 (67.80%), Query Frame = 1
Query:    1 FADPVTETSAPGYIAAILRPMDLGTMRRRAEGGVYGSMDMLQNDLVLVVANFLSYDAPD 177
            F  P+T+  APGY AA+ RPMDLGT++R  + GV  +    Q D++L+++N L Y++ D
Sbjct:  933 FLRPITDEQAPGYSAAVRRPMDLGTIKRNIDSGVIRTTAEFQRDVLLMLSNALMYNSSD 991          
BLAST of mRNA_H-elongata_contig4779.11912.1 vs. uniprot
Match: A0A444TJR3_ARMVU (Bromodomain-containing protein 1 (Fragment) n=1 Tax=Armadillidium vulgare TaxID=13347 RepID=A0A444TJR3_ARMVU)

HSP 1 Score: 55.5 bits (132), Expect = 4.740e-8
Identity = 25/62 (40.32%), Postives = 38/62 (61.29%), Query Frame = 1
Query:    1 FADPVTETSAPGYIAAILRPMDLGTMRRRAEGGVYGSMDMLQNDLVLVVANFLSYDAPDTIF 186
            FA+PV     P Y+  +  PMDL TMR++A+   Y ++D    D  L++ N L+Y+A DT+F
Sbjct:   32 FAEPVDFEEVPDYLDVVKHPMDLSTMRQKAQAHQYQNVDQFAADFDLMIDNCLTYNAKDTVF 93          
BLAST of mRNA_H-elongata_contig4779.11912.1 vs. uniprot
Match: F0WAA9_9STRA (Uncharacterized protein AlNc14C44G3638 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WAA9_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.570e-7
Identity = 30/62 (48.39%), Postives = 38/62 (61.29%), Query Frame = 1
Query:    1 FADPVTETSAPGYIAAILRPMDLGTMRRRAEGGVYGSMDMLQNDLVLVVANFLSYDAPDTIF 186
            FADPV ET  P Y   I  PMDL TMR +AEGG Y S    ++D  L++ N LS++   TI+
Sbjct:  472 FADPVPET-VPNYRKTIQNPMDLSTMRGKAEGGDYQSAKSFRDDFNLMIQNCLSFNPETTIY 532          
BLAST of mRNA_H-elongata_contig4779.11912.1 vs. uniprot
Match: A0A8J6HLR3_TENMO (Uncharacterized protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6HLR3_TENMO)

HSP 1 Score: 55.8 bits (133), Expect = 1.570e-7
Identity = 23/62 (37.10%), Postives = 38/62 (61.29%), Query Frame = 1
Query:    1 FADPVTETSAPGYIAAILRPMDLGTMRRRAEGGVYGSMDMLQNDLVLVVANFLSYDAPDTIF 186
            F++PV     P Y   +  PMDL TMR++ + G+Y  +  ++ D  L++AN L+Y+  DT+F
Sbjct:  106 FSEPVDLEEVPDYTTVVAEPMDLSTMRKKLDDGLYPDLTSMEKDFDLMIANCLAYNNRDTVF 167          
BLAST of mRNA_H-elongata_contig4779.11912.1 vs. uniprot
Match: A0A8B7NN02_HYAAZ (peregrin-like n=1 Tax=Hyalella azteca TaxID=294128 RepID=A0A8B7NN02_HYAAZ)

HSP 1 Score: 54.7 bits (130), Expect = 4.040e-7
Identity = 27/62 (43.55%), Postives = 37/62 (59.68%), Query Frame = 1
Query:    1 FADPVTETSAPGYIAAILRPMDLGTMRRRAEGGVYGSMDMLQNDLVLVVANFLSYDAPDTIF 186
            FA+PV       Y   +  PMDL TMR +A+   Y S+D L+ D  L++ N L+Y+A DTIF
Sbjct:  739 FAEPVDLEEVKDYSDVVSCPMDLSTMREKAQNHAYASIDDLEKDFNLMIDNCLAYNAKDTIF 800          
BLAST of mRNA_H-elongata_contig4779.11912.1 vs. uniprot
Match: A0A8H7SEW7_9FUNG (Transcription initiation factor TFIID subunit 2 n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7SEW7_9FUNG)

HSP 1 Score: 54.3 bits (129), Expect = 5.560e-7
Identity = 27/62 (43.55%), Postives = 39/62 (62.90%), Query Frame = 1
Query:    1 FADPVTETS--APGYIAAILRPMDLGTMRRRAEGGVYGSMDMLQNDLVLVVANFLSYDAPDT 180
            F  PV E +  APGY AAI +PMDLGT+R + E G Y +   + +D+ L++ N  +Y+ P T
Sbjct: 1380 FLQPVDEETDGAPGYYAAIKKPMDLGTIRTKLEKGEYTTYQQMDDDIRLMLNNCFAYNGPGT 1441          
BLAST of mRNA_H-elongata_contig4779.11912.1 vs. uniprot
Match: G0U722_TRYVY (Bromo domain-containing protein n=1 Tax=Trypanosoma vivax (strain Y486) TaxID=1055687 RepID=G0U722_TRYVY)

HSP 1 Score: 53.1 bits (126), Expect = 1.000e-6
Identity = 25/60 (41.67%), Postives = 36/60 (60.00%), Query Frame = 1
Query:    1 FADPVTETSAPGYIAAILRPMDLGTMRRRAEGGVYGSMDMLQNDLVLVVANFLSYDAPDT 180
            F  PV+ T  P Y   + RP+DL T++R  E G Y +   +QND+ L++AN L Y+A  T
Sbjct:   31 FHHPVSATELPDYHTVVKRPIDLSTIQRGIENGTYTAEAEVQNDVALMIANALEYNAKGT 90          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig4779.11912.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEP1_ECTSI6.140e-1661.29WD-repeat protein, putative n=1 Tax=Ectocarpus sil... [more]
A0A6H5KTA2_9PHAE6.150e-1661.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A061QRC8_9CHLO4.860e-946.77Bromodomain-containing protein 7/9 (Fragment) n=2 ... [more]
A0A4C1ZGT1_EUMVA1.290e-844.07Bromodomain-containing protein 8 n=1 Tax=Eumeta va... [more]
A0A444TJR3_ARMVU4.740e-840.32Bromodomain-containing protein 1 (Fragment) n=1 Ta... [more]
F0WAA9_9STRA1.570e-748.39Uncharacterized protein AlNc14C44G3638 n=1 Tax=Alb... [more]
A0A8J6HLR3_TENMO1.570e-737.10Uncharacterized protein n=1 Tax=Tenebrio molitor T... [more]
A0A8B7NN02_HYAAZ4.040e-743.55peregrin-like n=1 Tax=Hyalella azteca TaxID=294128... [more]
A0A8H7SEW7_9FUNG5.560e-743.55Transcription initiation factor TFIID subunit 2 n=... [more]
G0U722_TRYVY1.000e-641.67Bromo domain-containing protein n=1 Tax=Trypanosom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig4779contigH-elongata_contig4779:10903..11088 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.3
Seed ortholog evalue1.8e-13
Seed eggNOG ortholog2880.D8LEP1
KEGG koko:K02606,ko:K11797,ko:K11798
KEGG Pathwayko04110,ko04111,ko04113,map04110,map04111,map04113
KEGG ModuleM00284
GOsGO:0001932,GO:0001934,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006325,GO:0006355,GO:0006357,GO:0006606,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007010,GO:0007088,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007346,GO:0008104,GO:0008150,GO:0008284,GO:0008286,GO:0008360,GO:0009719,GO:0009725,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010033,GO:0010243,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010564,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010647,GO:0010648,GO:0010799,GO:0010800,GO:0010941,GO:0015031,GO:0015833,GO:0016043,GO:0017038,GO:0019219,GO:0019220,GO:0019221,GO:0019222,GO:0022603,GO:0022604,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032868,GO:0032869,GO:0032870,GO:0033036,GO:0033043,GO:0033135,GO:0033138,GO:0033365,GO:0034097,GO:0034504,GO:0034613,GO:0038111,GO:0040008,GO:0042127,GO:0042221,GO:0042325,GO:0042327,GO:0042393,GO:0042886,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043434,GO:0043567,GO:0043568,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045787,GO:0045840,GO:0045893,GO:0045931,GO:0045935,GO:0045937,GO:0045944,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051169,GO:0051170,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051276,GO:0051641,GO:0051649,GO:0051716,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0060255,GO:0060548,GO:0065007,GO:0065008,GO:0070013,GO:0070577,GO:0070727,GO:0070887,GO:0071310,GO:0071345,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0080090,GO:0090068,GO:0098760,GO:0098761,GO:0140030,GO:0140033,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141,GO:2001233,GO:2001234,GO:2001236,GO:2001237
EggNOG free text desc.regulation of cell shape
EggNOG OGsCOG2319@1,COG5141@1,KOG0644@2759,KOG0955@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko04121
Hectar predicted targeting categoryother localisation
Exons1
Model size186
Cds size186
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930788.6133196-CDS-H-elongata_contig4779:10902..110881622930788.6133196-CDS-H-elongata_contig4779:10902..11088Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4779 10903..11088 -
1691679570.702205-CDS-H-elongata_contig4779:10902..110881691679570.702205-CDS-H-elongata_contig4779:10902..11088Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4779 10903..11088 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig4779.11912.1prot_H-elongata_contig4779.11912.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig4779 10903..11088 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig4779.11912.1

>prot_H-elongata_contig4779.11912.1 ID=prot_H-elongata_contig4779.11912.1|Name=mRNA_H-elongata_contig4779.11912.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=62bp
FADPVTETSAPGYIAAILRPMDLGTMRRRAEGGVYGSMDMLQNDLVLVVA
NFLSYDAPDTIF
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mRNA from alignment at H-elongata_contig4779:10903..11088-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig4779.11912.1 ID=mRNA_H-elongata_contig4779.11912.1|Name=mRNA_H-elongata_contig4779.11912.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=186bp|location=Sequence derived from alignment at H-elongata_contig4779:10903..11088- (Himanthalia elongata Himel1 dioecious)
TTCGCCGATCCGGTCACCGAGACCTCCGCCCCCGGTTACATCGCCGCCAT CCTGCGGCCGATGGATTTAGGGACAATGAGAAGACGCGCGGAAGGTGGCG TCTACGGTTCGATGGATATGCTGCAGAACGATCTCGTCCTGGTCGTGGCG AACTTTCTGTCGTACGACGCTCCGGACACGATCTTC
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Coding sequence (CDS) from alignment at H-elongata_contig4779:10903..11088-

>mRNA_H-elongata_contig4779.11912.1 ID=mRNA_H-elongata_contig4779.11912.1|Name=mRNA_H-elongata_contig4779.11912.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=372bp|location=Sequence derived from alignment at H-elongata_contig4779:10903..11088- (Himanthalia elongata Himel1 dioecious)
TTCGCCGATCCGGTCACCGAGACCTCCGCCCCCGGTTACATCGCCGCCAT
CCTGCGGCCGATGGATTTAGGGACAATGAGAAGACGCGCGGAAGGTGGCG
TCTACGGTTCGATGGATATGCTGCAGAACGATCTCGTCCTGGTCGTGGCG
AACTTTCTGTCGTACGACGCTCCGGACACGATCTTCTTCGCCGATCCGGT
CACCGAGACCTCCGCCCCCGGTTACATCGCCGCCATCCTGCGGCCGATGG
ATTTAGGGACAATGAGAAGACGCGCGGAAGGTGGCGTCTACGGTTCGATG
GATATGCTGCAGAACGATCTCGTCCTGGTCGTGGCGAACTTTCTGTCGTA
CGACGCTCCGGACACGATCTTC
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