mRNA_H-elongata_contig47740.11908.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig47740.11908.1
Unique NamemRNA_H-elongata_contig47740.11908.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig47740.11908.1 vs. uniprot
Match: A0A6H5KUC4_9PHAE (Apt1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUC4_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 7.850e-26
Identity = 55/73 (75.34%), Postives = 65/73 (89.04%), Query Frame = 1 
Query:    1 RTVSATNRLNRAVRALKLKLQQRPNTHLFLCLKRLRLELWRDESSSPFLRAEVRRITADVMIYDDSSGSLDIQ 219
            R++ A+  L +AVR LK KLQQRPNTHL L LKRL+LELWRDESS+PFLRAEVRR+TADVM+YDDSSGS+D+Q
Sbjct:  833 RSMLASELLRKAVRLLKQKLQQRPNTHLVLHLKRLKLELWRDESSTPFLRAEVRRVTADVMVYDDSSGSVDLQ 905
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BLAST of mRNA_H-elongata_contig47740.11908.1 vs. uniprot
Match: D7G7J9_ECTSI (Apt1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J9_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 2.690e-25
Identity = 54/73 (73.97%), Postives = 65/73 (89.04%), Query Frame = 1 
Query:    1 RTVSATNRLNRAVRALKLKLQQRPNTHLFLCLKRLRLELWRDESSSPFLRAEVRRITADVMIYDDSSGSLDIQ 219
            R++ A+  L +AVR LK KLQQRPNTHL L LKRL+LELWRDES++PFLRAEVRR+TADVM+YDDSSGS+D+Q
Sbjct:  338 RSMLASELLRKAVRLLKQKLQQRPNTHLALHLKRLKLELWRDESNAPFLRAEVRRVTADVMVYDDSSGSVDLQ 410
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47740.11908.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KUC4_9PHAE7.850e-2675.34Apt1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G7J9_ECTSI2.690e-2573.97Apt1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig47740contigH-elongata_contig47740:648..3155 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size249
Cds size249
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930788.1828878-CDS-H-elongata_contig47740:647..7321622930788.1828878-CDS-H-elongata_contig47740:647..732Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47740 648..732 +
1691679570.5286891-CDS-H-elongata_contig47740:647..7321691679570.5286891-CDS-H-elongata_contig47740:647..732Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47740 648..732 +
1622930788.1986256-CDS-H-elongata_contig47740:2991..31551622930788.1986256-CDS-H-elongata_contig47740:2991..3155Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47740 2992..3155 +
1691679570.5386703-CDS-H-elongata_contig47740:2991..31551691679570.5386703-CDS-H-elongata_contig47740:2991..3155Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47740 2992..3155 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig47740.11908.1prot_H-elongata_contig47740.11908.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig47740 648..3155 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig47740.11908.1

>prot_H-elongata_contig47740.11908.1 ID=prot_H-elongata_contig47740.11908.1|Name=mRNA_H-elongata_contig47740.11908.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp
RTVSATNRLNRAVRALKLKLQQRPNTHLFLCLKRLRLELWRDESSSPFLR
AEVRRITADVMIYDDSSGSLDIQASGSGEYVE*
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mRNA from alignment at H-elongata_contig47740:648..3155+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig47740.11908.1 ID=mRNA_H-elongata_contig47740.11908.1|Name=mRNA_H-elongata_contig47740.11908.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2508bp|location=Sequence derived from alignment at H-elongata_contig47740:648..3155+ (Himanthalia elongata Himel1 dioecious)
AGGACTGTGTCTGCGACAAATCGGCTGAATAGGGCGGTCAGGGCCTTGAA
GCTCAAGCTGCAACAGCGGCCCAACACCCATCTCTGTGAGTTTTTACATT
GCTGCAGCAGAATAGCCATTCCGTATAGGGCATAAGGTATAATAGCCATT
TTGTATAGGGCATAGGGCATAATAGCCATAATTTTATTAACAAACAAGAA
AATCGTACCGTACGTTTCAGTGCAGCAGCAGCAGCAGCAGCAGCGGCAGT
AGTTTCAAGCTCCGTCGGCCGACTCGTTCTTGGCTTTGTGTTGTTTTCGT
TTTTGTTTTTCTCATTTTTGTGCGTGTGTGGTCATGACGTCATCATCACA
TTTAGCAGAGTAAAAATAAACCGGATTTAGTTGCCTCCTGCTCGTCGTCA
GCTGAACAGGGAAAGTAATATGAAAAGTAGGATAGGCCAATACAACATAC
AACGTCTTCATCGTTATGACGTCATCATCTTCAGGGATATCTAGCTCCAC
ATAGATCGGGGGGTGTATTTGCAAACCGGCGTGGCGCCCCCTTACGTGTT
ATGATCATGATCATGCCGGTTTGCGCGGTCTAAGGCAAATTGATAAAAGG
GAAAAAATAATTTTCCCTGTGGCCGTTCGCGCCTTATAGATTTTCGTCTC
GCGAGACAGGTTCGACCGTCCCATCCCGCGACAAACCGCTCATTATCTTA
TCAACCCCGTCTGAATTTGGTGTGTGTGTGTGTGTGTGTGTATATATATA
TTCGTTAATTTTTTGTATTTGTTAAATTGCACATAACCGCGCAATAATCC
GGCCCTGTCGTCCTAGTCATTCTATGCCACTCGTATTGATCCTCCTAGGG
GGGGATGAATTATACTTATTCCGAAAAGCGTGTATGTTTGTGTATATATA
TATGTATATTGATGGAGAACGTGGTAAAATTTTATCAGCTGCCCGGGGCA
CCTTACAGCCACTTTTCGTGTCTTGCCGTTTTGTTCTTATTGTTTTTTTA
GTGTGTTGATTGCCAACATTCTAATGCTCTAGACGGTCTAGACGGTAGCC
CATTCCGCAATAGGCATTTTTGGCCTAAAAGCAGAAACATGAGAGACAAC
TAAAATAATCGCCGAAACATAAGATGAGAGATGAGAGATGAGAGACTACT
TATCCCCAACGATGGAGGGGACCCCTAACCTTAACCCTAACCTAACCTAA
GCAAAACAAAACAAAACAGAGAATTGATGCACAGGAGAACGTTCGGTTTG
ATAGTTTTGGCCAAATAAAAGGCGTGTCGTTTTTTGTGGCTAAGGGTACT
TTGTATTTTTTTGGGTGGGGAGGATAATGACAGGACAGGACAGGACACTT
TGTTCGCTTTAACGAGTCTGAGGAGTGCCGTTTTTTGTTCAAACCGGCAA
AATAAAAAGTCATAAAATCATAAAAATGCACAGGATTTATGATAAAACTG
TTCAAAACTGTTCTTGGAGACAAACTATAACAATTTGTAGCGTTATATAT
ACGGGAAAGTATAGCAAGTATCCCCTCAAACGTGGGGACGCGGTCGTCAG
ACCCCCCTCCTTTGGCCTTAGGCATGACTTAAGTCAAGACGGAGATGAAT
GGTACCTGGTATGTATTAATTATTGATACCAGACGGAGATGAATGGTACC
TGGTATGTATTAATTATTGATACCAGACGGAGATGAATGGTACCTGGTGT
GTATTAATTATTGATACCAGACGGAGATGAATGGTACCTGGTATGTATTA
ATTATCAATACCATTAATTATTAAGGGTTAGACGGAGAGGGTATTAATAA
CAGAATATTTTCGAATATTTGATAGGTACCATAGAGACAATAATGATTCA
GGAAACGAATGATTACTAGTCTACCGTAGAAGGTGGCGAGAAAGGGTTAG
GGTCTAAAAGTATTGGAAAATTGAATGGTAAACAAATAAATAGTATATGA
AAAGTCTTCATGCATGGATTATACTCTACTATAATATACTACACTATATT
ATACCTGGGACTATACGAATGGATGAAGAGAAAAAGTTAAAGGTCAAATT
CAGAACTGGAGGCGTTGACCTCTCCTCCGGTATTCCTACGGCAGTTATAA
CCAAAGTATTAGCTAATAGACTAGACTAGACTATAGACTAGATGAGGACA
AGTATCAATATTATTGCATTGTATTGGCCATCGGCGATCGATGGTGTGTG
ATCGTGGTTAACGATGTAACAAGTACTGAAACATCTAAAATAGGCAAAGT
CAAAACTCGAGTATGTCCCTTCCCCCTCTTAGATGACGCCTCCCCCACCT
CGCCGCTGACTTGTTGTGAACACGCGGTGAACTCAAAAACACAGTTTTGT
GTCTGAAGCGCCTGAGACTCGAGCTGTGGCGAGACGAGAGCAGCAGCCCG
TTCCTGAGGGCAGAGGTTCGGCGCATCACAGCCGACGTGATGATCTACGA
CGACTCCTCCGGAAGCCTCGATATACAGGCGAGTGGCAGTGGCGAGTATG
TTGAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig47740:648..3155+

>mRNA_H-elongata_contig47740.11908.1 ID=mRNA_H-elongata_contig47740.11908.1|Name=mRNA_H-elongata_contig47740.11908.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at H-elongata_contig47740:648..3155+ (Himanthalia elongata Himel1 dioecious)
AGGACTGTGTCTGCGACAAATCGGCTGAATAGGGCGGTCAGGGCCTTGAA
GCTCAAGCTGCAACAGCGGCCCAACACCCATCTCTAGGACTGTGTCTGCG
ACAAATCGGCTGAATAGGGCGGTCAGGGCCTTGAAGCTCAAGCTGCAACA
GCGGCCCAACACCCATCTCTTTTTGTGTCTGAAGCGCCTGAGACTCGAGC
TGTGGCGAGACGAGAGCAGCAGCCCGTTCCTGAGGGCAGAGGTTCGGCGC
ATCACAGCCGACGTGATGATCTACGACGACTCCTCCGGAAGCCTCGATAT
ACAGGCGAGTGGCAGTGGCGAGTATGTTGAGTGATTTTGTGTCTGAAGCG
CCTGAGACTCGAGCTGTGGCGAGACGAGAGCAGCAGCCCGTTCCTGAGGG
CAGAGGTTCGGCGCATCACAGCCGACGTGATGATCTACGACGACTCCTCC
GGAAGCCTCGATATACAGGCGAGTGGCAGTGGCGAGTATGTTGAGTGA
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