mRNA_H-elongata_contig47728.11907.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig47728.11907.1
Unique NamemRNA_H-elongata_contig47728.11907.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig47728.11907.1 vs. uniprot
Match: A0A6P0N5L4_9CYAN (Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0N5L4_9CYAN)

HSP 1 Score: 60.8 bits (146), Expect = 1.750e-7
Identity = 41/90 (45.56%), Postives = 49/90 (54.44%), Query Frame = 2 
Query:  290 RSGGCGLTSSSDIRDAAFIGSQALVLARAVAKVAGPNVSAFLERLPNTPCATAPIKSHKAISQTAKPHEIAGAVGTPWTAIALRQDLCNR 559
            R GG G+ S+ DI   AFIG QALVLARA+      N+S  L  L  TP A A     + + + A   EI   VGT W AIAL +D  NR
Sbjct: 1586 REGGLGIPSTVDISGPAFIGGQALVLARALVATNATNLSHELAVLAETPYAQALTGELRKLPKYASGSEITEMVGTSWAAIALNKDPANR 1675
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47728.11907.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6P0N5L4_9CYAN1.750e-745.56Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig47728contigH-elongata_contig47728:1619..2247 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size560
Cds size453
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig47728.11907.1prot_H-elongata_contig47728.11907.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig47728 1619..2141 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930788.0918646-CDS-H-elongata_contig47728:1618..18821622930788.0918646-CDS-H-elongata_contig47728:1618..1882Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47728 1619..1882 -
1691679570.4887495-CDS-H-elongata_contig47728:1618..18821691679570.4887495-CDS-H-elongata_contig47728:1618..1882Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47728 1619..1882 -
1622930788.1080863-CDS-H-elongata_contig47728:1952..21411622930788.1080863-CDS-H-elongata_contig47728:1952..2141Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47728 1953..2141 -
1691679570.5048532-CDS-H-elongata_contig47728:1952..21411691679570.5048532-CDS-H-elongata_contig47728:1952..2141Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47728 1953..2141 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930788.1274738-UTR-H-elongata_contig47728:2141..22471622930788.1274738-UTR-H-elongata_contig47728:2141..2247Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47728 2142..2247 -
1691679570.5182931-UTR-H-elongata_contig47728:2141..22471691679570.5182931-UTR-H-elongata_contig47728:2141..2247Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47728 2142..2247 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig47728.11907.1

>prot_H-elongata_contig47728.11907.1 ID=prot_H-elongata_contig47728.11907.1|Name=mRNA_H-elongata_contig47728.11907.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=151bp
MPSHLPDLAAIGRRPHGLHSMHCPPGHYESPDGRVRPYARVGFSERARQD
SHPPMKSETTHRSGGCGLTSSSDIRDAAFIGSQALVLARAVAKVAGPNVS
AFLERLPNTPCATAPIKSHKAISQTAKPHEIAGAVGTPWTAIALRQDLCN
R
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mRNA from alignment at H-elongata_contig47728:1619..2247-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig47728.11907.1 ID=mRNA_H-elongata_contig47728.11907.1|Name=mRNA_H-elongata_contig47728.11907.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=629bp|location=Sequence derived from alignment at H-elongata_contig47728:1619..2247- (Himanthalia elongata Himel1 dioecious)
GGTATGAGGGTCCCGGTCGGCACGGGGGAATACCAACGGAGGTTTGTGGA
GGCCTTCATGAGAGGGGAGCCGACTCAACTGCTGCGGGAGCTCGCGTCGA
TGGAAGATGCCCAGCCACCTTCCAGATCTTGCGGCTATCGGCCGCCGTCC
CCACGGCCTTCATTCTATGCACTGTCCCCCCGGACATTACGAAAGCCCCG
ATGGAAGAGTTCGACCGTATGCTCGAGTGGGGTTTAGCGAGCGGGCGCGG
CAGGACTCGCATCCCCCGATGAAGTCCGAGACCACCCATCGGTCTGTCAA
CGGCAGCACCTGCTAGGAAAAGATGCCATTGCCCAGACACGCCTACCAAT
CTACCAACCCGGGAGGGGGGGTGCGGTTTAACCAGTAGCTCCGACATCCG
CGACGCCGCCTTCATCGGCAGCCAGGCGCTTGTCCTAGCGCGAGCAGTAG
CGAAAGTTGCGGGGCCGAACGTGTCTGCCTTTCTGGAGCGTCTGCCGAAC
ACCCCCTGTGCCACCGCCCCGATCAAGTCCCACAAGGCCATCTCCCAGAC
CGCCAAGCCGCACGAGATTGCCGGCGCCGTTGGAACACCGTGGACAGCCA
TCGCACTGAGGCAGGACCTGTGTAACCGG
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Coding sequence (CDS) from alignment at H-elongata_contig47728:1619..2247-

>mRNA_H-elongata_contig47728.11907.1 ID=mRNA_H-elongata_contig47728.11907.1|Name=mRNA_H-elongata_contig47728.11907.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=906bp|location=Sequence derived from alignment at H-elongata_contig47728:1619..2247- (Himanthalia elongata Himel1 dioecious)
ATGCCCAGCCACCTTCCAGATCTTGCGGCTATCGGCCGCCGTCCCCACGG
CCTTCATTCTATGCACTGTCCCCCCGGACATTACGAAAGCCCCGATGGAA
GAGTTCGACCGTATGCTCGAGTGGGGTTTAGCGAGCGGGCGCGGCAGGAC
TCGCATCCCCCGATGAAGTCCGAGACCACCCATCGGTCTATGCCCAGCCA
CCTTCCAGATCTTGCGGCTATCGGCCGCCGTCCCCACGGCCTTCATTCTA
TGCACTGTCCCCCCGGACATTACGAAAGCCCCGATGGAAGAGTTCGACCG
TATGCTCGAGTGGGGTTTAGCGAGCGGGCGCGGCAGGACTCGCATCCCCC
GATGAAGTCCGAGACCACCCATCGGTCTGGGGGGTGCGGTTTAACCAGTA
GCTCCGACATCCGCGACGCCGCCTTCATCGGCAGCCAGGCGCTTGTCCTA
GCGCGAGCAGTAGCGAAAGTTGCGGGGCCGAACGTGTCTGCCTTTCTGGA
GCGTCTGCCGAACACCCCCTGTGCCACCGCCCCGATCAAGTCCCACAAGG
CCATCTCCCAGACCGCCAAGCCGCACGAGATTGCCGGCGCCGTTGGAACA
CCGTGGACAGCCATCGCACTGAGGCAGGACCTGTGTAACCGGGGGGGGTG
CGGTTTAACCAGTAGCTCCGACATCCGCGACGCCGCCTTCATCGGCAGCC
AGGCGCTTGTCCTAGCGCGAGCAGTAGCGAAAGTTGCGGGGCCGAACGTG
TCTGCCTTTCTGGAGCGTCTGCCGAACACCCCCTGTGCCACCGCCCCGAT
CAAGTCCCACAAGGCCATCTCCCAGACCGCCAAGCCGCACGAGATTGCCG
GCGCCGTTGGAACACCGTGGACAGCCATCGCACTGAGGCAGGACCTGTGT
AACCGG
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