mRNA_H-elongata_contig47723.11906.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig47723.11906.1
Unique NamemRNA_H-elongata_contig47723.11906.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig47723.11906.1 vs. uniprot
Match: A0A6H5JJJ6_9PHAE (GST C-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJJ6_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 2.030e-22
Identity = 45/50 (90.00%), Postives = 49/50 (98.00%), Query Frame = 1 
Query:    1 VFEGLSQCEEILSKERFLVGDRFTEADLRLIPTAVRFDAVYATLFKCSNK 150
            VFEGL++CEEILSK RFL+GD+FTEADLRLIPTAVRFDAVYATLFKCSNK
Sbjct:  309 VFEGLTKCEEILSKNRFLLGDKFTEADLRLIPTAVRFDAVYATLFKCSNK 358
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BLAST of mRNA_H-elongata_contig47723.11906.1 vs. uniprot
Match: A0A225V964_9STRA (Glutathione S-transferase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225V964_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 6.650e-16
Identity = 37/50 (74.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    1 VFEGLSQCEEILSKERFLVGDRFTEADLRLIPTAVRFDAVYATLFKCSNK 150
            VFEGL +CEEILSK RFLVGDR TEADL+L PT VRFD VYA  FK + K
Sbjct:  239 VFEGLDRCEEILSKHRFLVGDRLTEADLKLFPTLVRFDEVYAVHFKANKK 288
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BLAST of mRNA_H-elongata_contig47723.11906.1 vs. uniprot
Match: E1Z5X8_CHLVA (GST C-terminal domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z5X8_CHLVA)

HSP 1 Score: 76.6 bits (187), Expect = 4.570e-15
Identity = 34/50 (68.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:    1 VFEGLSQCEEILSKERFLVGDRFTEADLRLIPTAVRFDAVYATLFKCSNK 150
            +FE L++ E +LS++RF+ GDRFTEADLRL PT VRFDAVYATLFKC  +
Sbjct:  285 LFETLAELEAVLSRQRFVCGDRFTEADLRLFPTIVRFDAVYATLFKCCRR 334
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BLAST of mRNA_H-elongata_contig47723.11906.1 vs. uniprot
Match: A0A2P6TQ33_CHLSO (Glutathione-dependent reductase n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TQ33_CHLSO)

HSP 1 Score: 73.9 bits (180), Expect = 4.060e-14
Identity = 33/50 (66.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:    1 VFEGLSQCEEILSKERFLVGDRFTEADLRLIPTAVRFDAVYATLFKCSNK 150
            +F  L + +E+LS++RF+ G+RFTEADLRL PT VRFDAVYATLFKC  K
Sbjct:  212 LFACLDELDELLSRQRFVCGERFTEADLRLFPTIVRFDAVYATLFKCCKK 261
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BLAST of mRNA_H-elongata_contig47723.11906.1 vs. uniprot
Match: A0A2P4YVB9_9STRA (Glutathione S-transferase n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YVB9_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 5.890e-14
Identity = 34/50 (68.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    1 VFEGLSQCEEILSKERFLVGDRFTEADLRLIPTAVRFDAVYATLFKCSNK 150
            VF GL + E+ILSK RFLVGDRFTEAD++L PT VRFD VYA  FK + K
Sbjct:  232 VFAGLDRAEDILSKHRFLVGDRFTEADIKLFPTLVRFDEVYAVHFKANKK 281
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BLAST of mRNA_H-elongata_contig47723.11906.1 vs. uniprot
Match: V9ESM9_PHYPR (GST C-terminal domain-containing protein n=1 Tax=Phytophthora parasitica P1569 TaxID=1317065 RepID=V9ESM9_PHYPR)

HSP 1 Score: 70.9 bits (172), Expect = 1.020e-13
Identity = 34/50 (68.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    1 VFEGLSQCEEILSKERFLVGDRFTEADLRLIPTAVRFDAVYATLFKCSNK 150
            VF GL + E+ILS+ RFLVGDR TEADL+L PT VRFD VYA  FK S K
Sbjct:   87 VFAGLDRAEKILSEHRFLVGDRLTEADLKLFPTLVRFDEVYAVHFKASRK 136
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BLAST of mRNA_H-elongata_contig47723.11906.1 vs. uniprot
Match: W2KUZ8_PHYPR (GST C-terminal domain-containing protein n=1 Tax=Phytophthora parasitica TaxID=4792 RepID=W2KUZ8_PHYPR)

HSP 1 Score: 70.9 bits (172), Expect = 2.280e-13
Identity = 34/50 (68.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    1 VFEGLSQCEEILSKERFLVGDRFTEADLRLIPTAVRFDAVYATLFKCSNK 150
            VF GL + E+ILS+ RFLVGDR TEADL+L PT VRFD VYA  FK S K
Sbjct:  148 VFAGLDRAEKILSEHRFLVGDRLTEADLKLFPTLVRFDEVYAVHFKASRK 197
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BLAST of mRNA_H-elongata_contig47723.11906.1 vs. uniprot
Match: A0A4D9D2J1_9STRA (GST C-terminal domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D2J1_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 2.640e-13
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    1 VFEGLSQCEEILSKERFLVGDRFTEADLRLIPTAVRFDAVYATLFKCSNK 150
            VF GL + E IL+ +RFL GD  TEAD+RL PT +RFDAVYA+LFKC+ K
Sbjct:  450 VFRGLERVEAILTDQRFLAGDVLTEADVRLFPTVIRFDAVYASLFKCAGK 499
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BLAST of mRNA_H-elongata_contig47723.11906.1 vs. uniprot
Match: UPI0002FB7B45 (glutathione S-transferase C-terminal domain-containing protein n=1 Tax=Peptoniphilus grossensis TaxID=1465756 RepID=UPI0002FB7B45)

HSP 1 Score: 69.3 bits (168), Expect = 2.740e-13
Identity = 32/48 (66.67%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:    1 VFEGLSQCEEILSKERFLVGDRFTEADLRLIPTAVRFDAVYATLFKCS 144
            VF  L + EEILSK+++LVGDRFTEAD+RL  T VRFDAVY + FKC+
Sbjct:   81 VFAALDRIEEILSKQKYLVGDRFTEADIRLFTTLVRFDAVYFSHFKCN 128
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BLAST of mRNA_H-elongata_contig47723.11906.1 vs. uniprot
Match: G5A6K5_PHYSP (GST C-terminal domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5A6K5_PHYSP)

HSP 1 Score: 70.9 bits (172), Expect = 3.520e-13
Identity = 33/50 (66.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    1 VFEGLSQCEEILSKERFLVGDRFTEADLRLIPTAVRFDAVYATLFKCSNK 150
            VF GL + E+ILS+ R+LVGDRFTEADL+L PT VRFD VYA  FK + K
Sbjct:  204 VFAGLDRAEKILSEHRYLVGDRFTEADLKLFPTLVRFDEVYAVHFKANKK 253
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47723.11906.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJJ6_9PHAE2.030e-2290.00GST C-terminal domain-containing protein n=1 Tax=E... [more]
A0A225V964_9STRA6.650e-1674.00Glutathione S-transferase n=1 Tax=Phytophthora meg... [more]
E1Z5X8_CHLVA4.570e-1568.00GST C-terminal domain-containing protein n=1 Tax=C... [more]
A0A2P6TQ33_CHLSO4.060e-1466.00Glutathione-dependent reductase n=1 Tax=Chlorella ... [more]
A0A2P4YVB9_9STRA5.890e-1468.00Glutathione S-transferase n=1 Tax=Phytophthora pal... [more]
V9ESM9_PHYPR1.020e-1368.00GST C-terminal domain-containing protein n=1 Tax=P... [more]
W2KUZ8_PHYPR2.280e-1368.00GST C-terminal domain-containing protein n=1 Tax=P... [more]
A0A4D9D2J1_9STRA2.640e-1364.00GST C-terminal domain-containing protein n=2 Tax=M... [more]
UPI0002FB7B452.740e-1366.67glutathione S-transferase C-terminal domain-contai... [more]
G5A6K5_PHYSP3.520e-1366.00GST C-terminal domain-containing protein n=1 Tax=P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig47723contigH-elongata_contig47723:1..153 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score77.4
Seed ortholog evalue2.1e-12
Seed eggNOG ortholog554065.XP_005850654.1
KEGG koko:K07393
EggNOG free text desc.glutathione s-transferase
EggNOG OGs34JWM@3041,37JC9@33090,COG0435@1,KOG2903@2759
EC1.8.5.7
COG Functional cat.O
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size153
Cds size153
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930788.0403402-CDS-H-elongata_contig47723:0..1531622930788.0403402-CDS-H-elongata_contig47723:0..153Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47723 1..153 +
1691679570.4750667-CDS-H-elongata_contig47723:0..1531691679570.4750667-CDS-H-elongata_contig47723:0..153Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47723 1..153 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig47723.11906.1prot_H-elongata_contig47723.11906.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig47723 1..153 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig47723.11906.1

>prot_H-elongata_contig47723.11906.1 ID=prot_H-elongata_contig47723.11906.1|Name=mRNA_H-elongata_contig47723.11906.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=51bp
VFEGLSQCEEILSKERFLVGDRFTEADLRLIPTAVRFDAVYATLFKCSNK
*
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mRNA from alignment at H-elongata_contig47723:1..153+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig47723.11906.1 ID=mRNA_H-elongata_contig47723.11906.1|Name=mRNA_H-elongata_contig47723.11906.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=153bp|location=Sequence derived from alignment at H-elongata_contig47723:1..153+ (Himanthalia elongata Himel1 dioecious)
GTATTTGAAGGACTGTCGCAGTGCGAAGAAATTCTGTCCAAGGAGCGATT
CCTCGTGGGCGACCGTTTTACCGAGGCGGATCTGCGACTCATTCCCACCG
CCGTACGCTTTGATGCCGTGTACGCCACGCTCTTCAAGTGTTCCAACAAG
TGA
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Coding sequence (CDS) from alignment at H-elongata_contig47723:1..153+

>mRNA_H-elongata_contig47723.11906.1 ID=mRNA_H-elongata_contig47723.11906.1|Name=mRNA_H-elongata_contig47723.11906.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=306bp|location=Sequence derived from alignment at H-elongata_contig47723:1..153+ (Himanthalia elongata Himel1 dioecious)
GTATTTGAAGGACTGTCGCAGTGCGAAGAAATTCTGTCCAAGGAGCGATT
CCTCGTGGGCGACCGTTTTACCGAGGCGGATCTGCGACTCATTCCCACCG
CCGTACGCTTTGATGCCGTGTACGCCACGCTCTTCAAGTGTTCCAACAAG
TGAGTATTTGAAGGACTGTCGCAGTGCGAAGAAATTCTGTCCAAGGAGCG
ATTCCTCGTGGGCGACCGTTTTACCGAGGCGGATCTGCGACTCATTCCCA
CCGCCGTACGCTTTGATGCCGTGTACGCCACGCTCTTCAAGTGTTCCAAC
AAGTGA
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