mRNA_H-elongata_contig4770.11904.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig4770.11904.1
Unique NamemRNA_H-elongata_contig4770.11904.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig4770.11904.1 vs. uniprot
Match: D7G647_ECTSI (RTW, Ras superfamily GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G647_ECTSI)

HSP 1 Score: 351 bits (901), Expect = 1.450e-121
Identity = 172/201 (85.57%), Postives = 189/201 (94.03%), Query Frame = 1 
Query:    1 MCQRETEGKDHMAERDEDDLEEPDLKVILLGDSAVGKSKLVERYLMDEYNPRQLSTFALTLFRKNARLEDGTEVKVDLWDTAGQERFSSMHSSYYHRAHASVLVFDVTRKATYKNLTEWYGELRQYCESIPCLLVANKIDVDYNVTKKSFKFAQQHGLPFYFVSAADGTNVVKIFEEAIKAGLEFKKNGGDFVDEALTLLE 603
            M +R+TEGKDHM + DED LE+PDLKVILLGDSAVGKSKLVERYLMDEYNPRQLSTFALTLFRKNA+L+DG EVKVD WDTAGQERFSSMH SYY+RAHA ++VFDVTRKATYKNL++WYGELRQY ESIPCLL+ANKIDVDY VTKKSFKFAQQH LPF+FVSAADGTNVVK F+EA+KAG+EFKKNGGDFVDEAL+LLE
Sbjct:    1 MSERKTEGKDHMEDGDED-LEDPDLKVILLGDSAVGKSKLVERYLMDEYNPRQLSTFALTLFRKNAKLDDGVEVKVDFWDTAGQERFSSMHPSYYYRAHACIMVFDVTRKATYKNLSDWYGELRQYSESIPCLLIANKIDVDYQVTKKSFKFAQQHDLPFFFVSAADGTNVVKAFDEAVKAGMEFKKNGGDFVDEALSLLE 200
[Close]
BLAST of mRNA_H-elongata_contig4770.11904.1 vs. uniprot
Match: A0A835ZG89_9STRA (RTW, ras superfamily GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG89_9STRA)

HSP 1 Score: 315 bits (806), Expect = 3.630e-107
Identity = 151/187 (80.75%), Postives = 170/187 (90.91%), Query Frame = 1 
Query:   46 DEDDLEEPDLKVILLGDSAVGKSKLVERYLMDEYNPRQLSTFALTLFRKNARLEDGTEVKVDLWDTAGQERFSSMHSSYYHRAHASVLVFDVTRKATYKNLTEWYGELRQYCESIPCLLVANKIDVDYNVTKKSFKFAQQHGLPFYFVSAADGTNVVKIFEEAIKAGLEFKKNGGDFVDEALTLLES 606
            D DDL +PDLKVILLGDSAVGKSKLVERYLMDEY+PRQLSTFALTLFRKNA LEDGT   VD WDTAGQERF+SMH SYY+RAHA ++VFDVTRKATYKNL +WYGELRQ+CESIPC+LVANKIDVDYNVTKK FKFA QH LPF+FVSAADG NVV++FEEAI+  +E K++GGDFV++ALTLL+S
Sbjct:   11 DTDDLGDPDLKVILLGDSAVGKSKLVERYLMDEYSPRQLSTFALTLFRKNAVLEDGTRTTVDFWDTAGQERFTSMHPSYYYRAHACIMVFDVTRKATYKNLVQWYGELRQFCESIPCILVANKIDVDYNVTKKCFKFATQHNLPFFFVSAADGANVVQVFEEAIRLAIEHKRSGGDFVEDALTLLDS 197
[Close]
BLAST of mRNA_H-elongata_contig4770.11904.1 vs. uniprot
Match: A0A125SEA6_9STRA (RABL2 n=1 Tax=Trachydiscus minutus TaxID=1032745 RepID=A0A125SEA6_9STRA)

HSP 1 Score: 284 bits (726), Expect = 8.590e-95
Identity = 133/183 (72.68%), Postives = 157/183 (85.79%), Query Frame = 1 
Query:   55 DLEEPDLKVILLGDSAVGKSKLVERYLMDEYNPRQLSTFALTLFRKNARLEDGTEVKVDLWDTAGQERFSSMHSSYYHRAHASVLVFDVTRKATYKNLTEWYGELRQYCESIPCLLVANKIDVDYNVTKKSFKFAQQHGLPFYFVSAADGTNVVKIFEEAIKAGLEFKKNGGDFVDEALTLLE 603
            DL +PD K+ILLGDSAVGKSKLVERYLMDEYNPRQLST+ALTL+RK   LE+G    +DLWDTAGQERF+S+H SYY+ AH  +LVFDVTRK TY++L++WYGELRQYCESIPC+LVANKIDVDY VTKKSFKFA Q+ LPF+FVSAADGTNVVK+F EA++ G+ FKKN  DF+ E +  L+
Sbjct:   28 DLGDPDCKIILLGDSAVGKSKLVERYLMDEYNPRQLSTYALTLYRKTVVLEEGNTYDIDLWDTAGQERFNSLHPSYYYGAHCCILVFDVTRKVTYQHLSDWYGELRQYCESIPCILVANKIDVDYKVTKKSFKFASQYELPFFFVSAADGTNVVKVFHEAVRLGINFKKNNPDFMTEVIEFLK 210
[Close]
BLAST of mRNA_H-elongata_contig4770.11904.1 vs. uniprot
Match: A0A8K1CGD5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CGD5_PYTOL)

HSP 1 Score: 271 bits (692), Expect = 9.420e-90
Identity = 132/191 (69.11%), Postives = 157/191 (82.20%), Query Frame = 1 
Query:   40 ERDEDDLEEPDLKVILLGDSAVGKSKLVERYLMDEYNPRQLSTFALTLFRKNARLED----GTEVKVDLWDTAGQERFSSMHSSYYHRAHASVLVFDVTRKATYKNLTEWYGELRQYCESIPCLLVANKIDVDYNVTKKSFKFAQQHGLPFYFVSAADGTNVVKIFEEAIKAGLEFKKNGGDFVDEALTLL 600
            E+ +DDL EPD+KVILLGDSAVGKSKLVER++M+E+ PRQLSTFALTLFRK   + D       +KVD WDTAGQERFSSMH SYY+ A A ++VFDVTRK TY+NLT WY ELR+YCE+IPC LVANKIDVD NVT K FKF++ H LPF FVSAADGTNVVK+F++A+KA  +FKK+GGDF+ + L LL
Sbjct:    6 EKPDDDLGEPDVKVILLGDSAVGKSKLVERFMMNEFQPRQLSTFALTLFRKEVEIPDEKGKSQVIKVDFWDTAGQERFSSMHPSYYYGATACIMVFDVTRKVTYQNLTGWYKELREYCENIPCFLVANKIDVDLNVTSKKFKFSETHNLPFEFVSAADGTNVVKVFQDAVKAAYQFKKDGGDFMADVLDLL 196
[Close]
BLAST of mRNA_H-elongata_contig4770.11904.1 vs. uniprot
Match: A0A024TW89_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024TW89_9STRA)

HSP 1 Score: 270 bits (690), Expect = 2.100e-89
Identity = 129/190 (67.89%), Postives = 154/190 (81.05%), Query Frame = 1 
Query:   49 EDDLEEPDLKVILLGDSAVGKSKLVERYLMDEYNPRQLSTFALTLFRKNARLEDGTEVKVDLWDTAGQERFSSMHSSYYHRAHASVLVFDVTRKATYKNLTEWYGELRQYCESIPCLLVANKIDVDYNVTKKSFKFAQQHGLPFYFVSAADGTNVVKIFEEAIKAGLEFKKNGGDFVDEALTLLESSTIN 618
            +D L +PD+K+ILLGDSAVGKSKLVERY+M+EY PRQLSTFALTLFRK+  + DG  VK+D WDTAGQERF+SMHSSYY  A A +LVFDVTRK TY++L +WY ELR+YCE++PC L ANK+DVD  VT K FKFA+ H L F FVSAADGTNVVK+FEEAI+A L+FK  GGDFV + L  L  S ++
Sbjct:   10 DDGLGDPDVKIILLGDSAVGKSKLVERYMMNEYQPRQLSTFALTLFRKDFTMPDGKTVKIDFWDTAGQERFNSMHSSYYFGAAACILVFDVTRKTTYQHLADWYKELREYCETVPCFLAANKVDVDVEVTNKKFKFAETHNLGFSFVSAADGTNVVKLFEEAIQAALKFKSEGGDFVSDVLDFLNDSPLD 199
[Close]
BLAST of mRNA_H-elongata_contig4770.11904.1 vs. uniprot
Match: T0R548_SAPDV (Rab family, other n=2 Tax=Saprolegniaceae TaxID=4764 RepID=T0R548_SAPDV)

HSP 1 Score: 270 bits (689), Expect = 2.700e-89
Identity = 130/184 (70.65%), Postives = 153/184 (83.15%), Query Frame = 1 
Query:   49 EDDLEEPDLKVILLGDSAVGKSKLVERYLMDEYNPRQLSTFALTLFRKNARLEDGTEVKVDLWDTAGQERFSSMHSSYYHRAHASVLVFDVTRKATYKNLTEWYGELRQYCESIPCLLVANKIDVDYNVTKKSFKFAQQHGLPFYFVSAADGTNVVKIFEEAIKAGLEFKKNGGDFVDEALTLL 600
            ED L + DLK+ILLGDSAVGKSKLVER++M+EY PRQLSTFALTLFRK   ++DG+  K+D+WDTAGQERFSSMH SYY  A A +LVFDVTRK TY++L +WY ELR+YCE++PC L ANKIDVD  VT K FKFA+ H L F+FVSAADGTNVVKIFEEAI AGL++KK GGDF+ + L LL
Sbjct:   12 EDGLGDADLKIILLGDSAVGKSKLVERFMMNEYQPRQLSTFALTLFRKEFPMDDGSTAKIDIWDTAGQERFSSMHPSYYFGASACILVFDVTRKTTYQHLADWYKELREYCENVPCFLAANKIDVDLEVTNKKFKFAETHNLGFHFVSAADGTNVVKIFEEAIHAGLKYKKEGGDFMADVLDLL 195
[Close]
BLAST of mRNA_H-elongata_contig4770.11904.1 vs. uniprot
Match: A0A6G0WRD6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WRD6_9STRA)

HSP 1 Score: 271 bits (692), Expect = 2.870e-89
Identity = 130/191 (68.06%), Postives = 155/191 (81.15%), Query Frame = 1 
Query:   49 EDDLEEPDLKVILLGDSAVGKSKLVERYLMDEYNPRQLSTFALTLFRKNARLEDGTEVKVDLWDTAGQERFSSMHSSYYHRAHASVLVFDVTRKATYKNLTEWYGELRQYCESIPCLLVANKIDVDYNVTKKSFKFAQQHGLPFYFVSAADGTNVVKIFEEAIKAGLEFKKNGGDFVDEALTLLESSTINS 621
            +D L +PD+K+ILLGDSAVGKSKLVERY+M+EY PRQLSTFALTLFRK+ +LEDGT  K+D WDTAGQERF+SMH+SYY  A A +LVFDVTRK TY++L +WY ELR+YCESIPC L ANK+DVD  VT K FKFA+ H L F FVSAADGTNVVK+FE+ I A L+ KK GGDF+ + L LL+  +  S
Sbjct:   11 DDGLGDPDVKIILLGDSAVGKSKLVERYMMNEYQPRQLSTFALTLFRKDFQLEDGTTAKIDFWDTAGQERFNSMHASYYFGASACILVFDVTRKTTYQHLADWYKELREYCESIPCFLAANKVDVDLEVTNKKFKFAETHNLSFSFVSAADGTNVVKLFEDTIHAALKHKKEGGDFMSDVLDLLDEPSDRS 201
[Close]
BLAST of mRNA_H-elongata_contig4770.11904.1 vs. uniprot
Match: A0A8J2WYL7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WYL7_9STRA)

HSP 1 Score: 270 bits (689), Expect = 3.190e-89
Identity = 127/190 (66.84%), Postives = 158/190 (83.16%), Query Frame = 1 
Query:   40 ERDEDDLEEPDLKVILLGDSAVGKSKLVERYLMDEYNPRQLSTFALTLFRKNARLEDGTEVKVDLWDTAGQERFSSMHSSYYHRAHASVLVFDVTRKATYKNLTEWYGELRQYCESIPCLLVANKIDVDYNVTKKSFKFAQQHGLPFYFVSAADGTNVVKIFEEAIKAGLEFKKNGGDFVDEALTLLESS 609
            E D +DL   D+K+ILLGDSAVGK+KLVER+LMDEYNP+QLST+ALT+FRKN  + DG  VKVD+WDTAGQERF+ MH +YYHRAHA +L FDVTRKATY++L  WY E+R  CE+IPC+LVANKID+DY VTKK+FKFA    +PFYFVSAADGTNVVK+F  A+++ L++K N GDF++EA  LL+ +
Sbjct:   18 ETDPNDLSPADVKIILLGDSAVGKTKLVERFLMDEYNPQQLSTYALTMFRKNLDI-DGKNVKVDIWDTAGQERFNKMHPAYYHRAHACILCFDVTRKATYQHLGAWYDEMRDACENIPCILVANKIDIDYQVTKKNFKFASSKNIPFYFVSAADGTNVVKVFRAAVESALDYKDNSGDFMNEAYKLLDDA 206
[Close]
BLAST of mRNA_H-elongata_contig4770.11904.1 vs. uniprot
Match: A0A7S2XUJ5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUJ5_9STRA)

HSP 1 Score: 268 bits (685), Expect = 1.700e-88
Identity = 129/199 (64.82%), Postives = 159/199 (79.90%), Query Frame = 1 
Query:   49 EDDLEEPDLKVILLGDSAVGKSKLVERYLMDEYNPRQLSTFALTLFRKNARLED---------------GTEVKVDLWDTAGQERFSSMHSSYYHRAHASVLVFDVTRKATYKNLTEWYGELRQYCESIPCLLVANKIDVDYNVTKKSFKFAQQHGLPFYFVSAADGTNVVKIFEEAIKAGLEFKKNGGDFVDEALTLL 600
            +DDL +PD KVILLGDSAVGKSKLVERYLM+++NPRQLSTFALTL+RK  +L +               G  V +D+WDTAGQERF+SMH SYY+RAHA +LVFDVTRK TY+NL+ WY ELR YCE+IP +L ANKID++Y VTKKSFKFA QH LPF+F SAADGTNVV+IFE A+K G+ +K+  GDF+++AL++L
Sbjct:    9 QDDLPDPDCKVILLGDSAVGKSKLVERYLMNDFNPRQLSTFALTLYRKEVQLPEDDGDGGKDDGAKGQGGRTVSIDIWDTAGQERFTSMHPSYYYRAHACILVFDVTRKVTYQNLSTWYSELRNYCENIPVILCANKIDINYEVTKKSFKFASQHQLPFFFASAADGTNVVQIFESAVKMGVHYKETEGDFIEDALSVL 207
[Close]
BLAST of mRNA_H-elongata_contig4770.11904.1 vs. uniprot
Match: A0A2D4BD48_PYTIN (Rab family, other n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BD48_PYTIN)

HSP 1 Score: 267 bits (682), Expect = 3.240e-88
Identity = 136/198 (68.69%), Postives = 154/198 (77.78%), Query Frame = 1 
Query:   28 DHMAERDEDDLEEPDLKVILLGDSAVGKSKLVERYLMDEYNPRQLSTFALTLFRKNARLEDGTE----VKVDLWDTAGQERFSSMHSSYYHRAHASVLVFDVTRKATYKNLTEWYGELRQYCESIPCLLVANKIDVDYNVTKKSFKFAQQHGLPFYFVSAADGTNVVKIFEEAIKAGLEFKKNGGDFVDEALTLLESS 609
            D   E  +DDL EPD+KVILLGDSAVGKSKLVER++MDE+ PRQLSTFALTLFRK   LED       VKVD WDTAGQERFSSMH SYY+ AHA +LVFDVTRK TY+NL  WY ELR+YCE+IPC LVANKIDVD  VT K FKFA+ H L F FVSAADGTNVVK+F++A+ A  +FK +GGDF+   L LL  S
Sbjct:    4 DAKRETPDDDLGEPDVKVILLGDSAVGKSKLVERFMMDEFQPRQLSTFALTLFRKEVELEDERGKPQIVKVDFWDTAGQERFSSMHPSYYYGAHACILVFDVTRKTTYQNLANWYKELREYCENIPCFLVANKIDVDLAVTNKKFKFAETHNLEFEFVSAADGTNVVKLFKQAVAAACKFKADGGDFMATVLDLLGES 201
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig4770.11904.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G647_ECTSI1.450e-12185.57RTW, Ras superfamily GTPase n=2 Tax=Ectocarpus Tax... [more]
A0A835ZG89_9STRA3.630e-10780.75RTW, ras superfamily GTPase n=1 Tax=Tribonema minu... [more]
A0A125SEA6_9STRA8.590e-9572.68RABL2 n=1 Tax=Trachydiscus minutus TaxID=1032745 R... [more]
A0A8K1CGD5_PYTOL9.420e-9069.11Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A024TW89_9STRA2.100e-8967.89Uncharacterized protein n=2 Tax=Aphanomyces TaxID=... [more]
T0R548_SAPDV2.700e-8970.65Rab family, other n=2 Tax=Saprolegniaceae TaxID=47... [more]
A0A6G0WRD6_9STRA2.870e-8968.06Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A8J2WYL7_9STRA3.190e-8966.84Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2XUJ5_9STRA1.700e-8864.82Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A2D4BD48_PYTIN3.240e-8868.69Rab family, other n=1 Tax=Pythium insidiosum TaxID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig4770contigH-elongata_contig4770:1265..7560 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score353.6
Seed ortholog evalue6.3e-95
Seed eggNOG ortholog2880.D7G647
Preferred nameRABL2B
KEGG koko:K07883,ko:K07931,ko:K07976,ko:K17977
GOsGO:0000001,GO:0000003,GO:0000131,GO:0000166,GO:0000242,GO:0000902,GO:0000904,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005783,GO:0005813,GO:0005814,GO:0005815,GO:0005856,GO:0005929,GO:0005933,GO:0005934,GO:0005935,GO:0006810,GO:0006928,GO:0006996,GO:0007005,GO:0007017,GO:0007018,GO:0007029,GO:0007030,GO:0007275,GO:0007338,GO:0007399,GO:0008150,GO:0008594,GO:0009566,GO:0009653,GO:0009987,GO:0010256,GO:0010970,GO:0012505,GO:0015630,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019953,GO:0022008,GO:0022414,GO:0022607,GO:0030030,GO:0030031,GO:0030154,GO:0030182,GO:0030317,GO:0030427,GO:0030705,GO:0030990,GO:0030992,GO:0031503,GO:0031514,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032989,GO:0032991,GO:0035639,GO:0036064,GO:0036094,GO:0036126,GO:0040011,GO:0042073,GO:0042461,GO:0042995,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044450,GO:0044463,GO:0044464,GO:0044703,GO:0044782,GO:0046530,GO:0046907,GO:0048308,GO:0048309,GO:0048311,GO:0048313,GO:0048468,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051645,GO:0051646,GO:0051649,GO:0051674,GO:0051704,GO:0060271,GO:0070925,GO:0071840,GO:0097159,GO:0097223,GO:0097225,GO:0097367,GO:0097722,GO:0097729,GO:0099111,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1901265,GO:1901363
EggNOG free text desc.GTP binding
EggNOG OGsCOG1100@1,KOG0087@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029,ko04031,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRTW, Ras superfamily GTPase
Ec32 orthologEc-11_005150.1
Exons5
Model size624
Cds size624
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig4770.11904.1prot_H-elongata_contig4770.11904.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig4770 1265..7560 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930787.7471693-CDS-H-elongata_contig4770:1264..13481622930787.7471693-CDS-H-elongata_contig4770:1264..1348Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4770 1265..1348 -
1691679570.318252-CDS-H-elongata_contig4770:1264..13481691679570.318252-CDS-H-elongata_contig4770:1264..1348Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4770 1265..1348 -
1622930787.766916-CDS-H-elongata_contig4770:3120..32281622930787.766916-CDS-H-elongata_contig4770:3120..3228Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4770 3121..3228 -
1691679570.3298786-CDS-H-elongata_contig4770:3120..32281691679570.3298786-CDS-H-elongata_contig4770:3120..3228Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4770 3121..3228 -
1622930787.7805815-CDS-H-elongata_contig4770:5233..54361622930787.7805815-CDS-H-elongata_contig4770:5233..5436Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4770 5234..5436 -
1691679570.3482113-CDS-H-elongata_contig4770:5233..54361691679570.3482113-CDS-H-elongata_contig4770:5233..5436Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4770 5234..5436 -
1622930787.8004718-CDS-H-elongata_contig4770:5859..60101622930787.8004718-CDS-H-elongata_contig4770:5859..6010Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4770 5860..6010 -
1691679570.3685033-CDS-H-elongata_contig4770:5859..60101691679570.3685033-CDS-H-elongata_contig4770:5859..6010Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4770 5860..6010 -
1622930787.817197-CDS-H-elongata_contig4770:7482..75601622930787.817197-CDS-H-elongata_contig4770:7482..7560Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4770 7483..7560 -
1691679570.3857539-CDS-H-elongata_contig4770:7482..75601691679570.3857539-CDS-H-elongata_contig4770:7482..7560Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4770 7483..7560 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig4770.11904.1

>prot_H-elongata_contig4770.11904.1 ID=prot_H-elongata_contig4770.11904.1|Name=mRNA_H-elongata_contig4770.11904.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=208bp
MCQRETEGKDHMAERDEDDLEEPDLKVILLGDSAVGKSKLVERYLMDEYN
PRQLSTFALTLFRKNARLEDGTEVKVDLWDTAGQERFSSMHSSYYHRAHA
SVLVFDVTRKATYKNLTEWYGELRQYCESIPCLLVANKIDVDYNVTKKSF
KFAQQHGLPFYFVSAADGTNVVKIFEEAIKAGLEFKKNGGDFVDEALTLL
ESSTINS*
back to top

mRNA from alignment at H-elongata_contig4770:1265..7560-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig4770.11904.1 ID=mRNA_H-elongata_contig4770.11904.1|Name=mRNA_H-elongata_contig4770.11904.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6296bp|location=Sequence derived from alignment at H-elongata_contig4770:1265..7560- (Himanthalia elongata Himel1 dioecious)
ATGTGCCAGCGCGAGACAGAGGGCAAGGATCACATGGCGGAGCGTGACGA
AGACGATCTTGAAGAGCCTGATCTGAAGGTAATTTTACTCTCTCGTGTCA
TGAAGACGGAGTTGAGTACAGTAGTAGCAAGGTAAGCAAGTATGATATAT
GTGACTATTATAGCGTGTCGCGTTTCGATCAAGGCGAGCGGGAGCCTCCA
TCATTATTTCATTCGGGAATGTTACGTCGAGGTTTCCTTGAGCCTATCAC
ATCATCATCAGCATGTAGTGGCGCTATCGCGAGAGAATCGGATCTTGTTT
CGGCATGAATTAAACACGTGTAGAGACATTCTTGTTGTGGTTGAGAAATG
GGTGGTCGTAGCGGATAATATTTGGTACATCAGCGCCTCCATCGATTGGA
TTGCATTGTTGTTCGGCCTCGCAGTCGCAATCGTTTCCTCCTGGGCGAAT
AATTTTCATGAAAAGTAGTGCAATACTGTGCCTTTTTTCTTGAAAAAATA
ATTAACTCGTTTCAACCCTCCGAACATCCACGCCTTCTTATCAATAATAG
CACCGTGAGAGGTGCTTCCTGTGCTCTTTACTAATAATAGAGTACTGCGT
CTAGTGCAATTTGAAGGCTCGTATCATCTGTGATTTGGATTTTTCCGGGA
TTTCCTCCAAAATCAAAGCTTTGAGTCGAGGATACACACTCAAACCTGAC
GATGATAATAGTATTAATAGTTAATTCCCTAGGATTCACCGTCCATTATG
TAAAGGTGTGGATGTTCGGAGGATTTGAATGAGATCATATGTTTTTGAAG
AATAAAAAATATATAGTTGTTGTCATCCATCCAATATATTCTGGACGTCA
TACGCACTAGACAGGGTCACACACAGGAGAAAAATCACAGATGATTTCTC
CACCTTCCTCGTGTGGTGCTTGCCTTCATTTTTTATCAAGATTCAGCAGC
AATCCCTTTCCCTCGCCGACCATGAAGTCGAATTTTGTGCACTCACGAAA
TAATCGTTCTTCACCTGTCAGGCTTGATGTGTGAGAAAATCTCAGTTGGT
GTGACTGCGCCGAGATTCGAACTCACGTCCCAACGTCAAAAGGTTTCGAG
GTTACCAACTAATCCAATTATATCCAAAAATCGTGCTGGATCATCTGTAG
ACCGAAAACCCCTATCGAGCACGCCATCCACGGGGATGAAATCCCCCCGT
CCTGTCAAGAAGACGTGGTCAATATGATCTAACAACAGCTAAATCATGCC
ATTTACTATTTAGTACAGTATATACAGTCCGCTTCCCCCTTCCCCCTACA
CTATAATTATATTAAAAAATATGGCATCTTATGAAACAAACAGCGAAGGT
TTCAAGCTCTCCAAATAGTTGAAGCACGAAAAAAGGAGACGGGGGATGAG
GGGTGAGAGGTGGGGGATTTCCCTCGGAAGGGACACGTTCTCAGAGAGTT
TCACGATAATCCCAAAATTATGATTGCTCTAGTCTACCGACCGTCGTGCT
TTTCTTGACCACCGACGGCCCACCCTGTGTCCTTTGGGCTCGCGGCAAAG
GTAATACTTTTGGGCGACTCTGCCGTGGGAAAGTCTAAGCTCGTCGAGCG
ATATCTCATGGACGAGTACAACCCTCGCCAGCTGTCCACGTTCGCCCTCA
CGCTCTTCCGAAAAAATGCAAGACTGGAGGACGGCACCGAGGTCAAAGTA
GGTGCGATATTATTATTATTATTATTATTATTATTATTAAAAAGCGTAAG
AAGTATGAACTAATTAGAACCTTTCGAAGCTCCACACTATATCCTATATA
CTTCTTAGCACCATGATAGGTCAGGTGTAGTCCAGGGGACCAACTATCGT
CAGGTTCGAATAATGTGGACATTTCAATTACATTTAATATATTATGTGAT
TATTCATCATATGGGGACGCCAAACCAGAGTCTACTACGGAGTGAACTGT
GTGTGGTGGTTAGGAATGATGTACCAAAACATACAGCTTGATAATACACA
CCCCAGCCCGTGGTGGACCCGAGATCATGCGATCATGTCATGACGTTATC
ATGTTGTCATGTTGTCATTAATCGATGTCGAAACCGGGAACATACACACA
TGCGCGCGCGCGCGGAAAGACCAGACCTGTGGGACACGGCGGGGCAGGAA
CGGTTCAGCAGCATGCACTCTTCATACTACCACCGGGCGCACGCGTCCGT
CTTGGTTTTCGATGTGACCCGGAAAGCGACGTACAAGAACTTGACGGAGT
GGTACGGGGAGCTCAGGCAGTACTGCGAGAGCATTCCGTGCCTGCTCGTG
GCGAACAAGATTGACGTCGACTACAACGTGAGCCGCACAGGCGAAAAAAT
GTGTTGTTATCGTTGTCATTATACTGTACTCGTGACTGGAAAGCAAATGG
CCGATTATACTACACGCGAGGAGCTGAACCTGCCGAAAAAAATACATCGA
AGAAGACAAAAGATTTCTGGCCGCCATCAGTTTCATCAAGAGTGTCGATT
CATCTCCGCGTCTCGAGCACATGGCCATCGTAACCCTCGTGAACCCATGG
TCCTACAGAAGACATCATCTTATTTGTGCCGTCGACATGACGGGCCCCTA
CTCCTGCTTCTTCTCTTTATATGTATATATATATATATATATTATCACTG
CACAAAATGCTTGTGTTCTTCACGAATCGCGCCGTCTCTATTTTACGATA
TACACATATATAAAGAAGCTGCTTTCAGTGTTACTATCTACCATTATCCC
CTCTGAGTTCCCCCCGGTACAGGGATCTTTAATTTTATTTTGAATCAACC
CCCGGAGGGGAAATCGCGTCTAGAGGGGGAAATTGCGACTAGTACTTCAG
TGATAGACGCATGCCACTCCAAGAACCGGGAGAGGAAATCGTGGATAGGC
GGGAGGAGTATTTATATTTTTCAACCAAAATATCCCCGGGGGGAAAATCC
CGGAATCATGCCTTTTCGCCGAAAAGGAGGTGGGGGGAGGGGGAAATCAT
TTGGGGGGGGGGGGACTCAGAGGAGATTACGGTATATCCGATTCGTCGTG
CATTGGTAGGGTATGACGATAGGAACATGCCGATGATCATGTCCTCTCCT
AAACGGGCGCGAGTCTCGAGCTAATGCTACAACAGGGGAACTTGGCATTT
CTGCCGAAATATGCTAAATATCGTGGACCATATCGCATCCCAAAAGGCTT
TTCATAGAATTTTTTTACCCATTTTCCGACGAGATTTGAACAGGTGTGTA
TTTATTTGTGAATGCGATTGAGAGTGGTCATGGCCGAAAATTTCCCGGGA
GGCTTTAGCCCCTAAAGCTGGCAGAAACTCGATCCGAACCTGATTTCTTG
TGTGTATCCCAAAGGACGCGTTTGATTATTCTTACTCCATGACTTTTAAG
CACGCTCCCAAGATTAAGGGGGAAAAGACGAAGATTTACGTCGCGGAATC
GGGGGGGGGTGGGAACAAACGATAAAACTGTTCTGTCCCCCGGTGCTGTG
GCGACCCAGGTTGTACACGCTTCTTGCTGTTTTTGTTGTAACGTGGAGCT
GTAGCGCCTCAACGCTTCGACCCGAGACAAATTCCCTCGCAAGAAATGTG
GTGTATTCGCGTGCCAAGGAGGGTTGTAGAAGTTTATTTTTTTACATTTG
ATCCGCAAGGGAATACGGTACATGAAGAAAATCGAAGGCGAAACCTGGCA
TTCAAGTCTTAGCTGGGCTCTCGTCGACATCTCTAGCTGGAGGGTGCTTC
CTGACTAAATAACGCACGTAGCCGTCTTTCGTCGTAACCACAAAAATAAC
CTTGAAGAGCAGCCCCAAGGGGAAACCCTTACTCACCCCATCCTGTTTTT
TGTTTCAGAACGCAGAGTGACTGTTGTCTCTCGGAAAAGTACACGTTCGA
AGTGTTTTCGGTGAGATCTCTTCAAAGCTGTGCTGTTCAGACATTAACGT
GTGGCTCGCTGTCAAGAAAAGTACCGTGTCAGTGTGTGTGTGTGGGGGGG
GGGATTCCCCCCGGCGAGGGTGTTCTCATAAATCTTCACGATATTCCGGG
GAGGTGGTGCCTCAGGGGGAAAGTCTCAACATTACTACAAGAGCAACATA
AGACAAGACAAGAGGACGTTGACTTCGCGCAAGAAATCATTCAAGTCTTG
TATATTTCTATATAGATATACATATATTATGTGTGTGTATTTTCACGGCG
TGGGCCCCCTTTAGATTCACGCCTCGTCCGGCTCGGTGTCCATCTCCTGG
TCTGTTAGACTGTTGTTGTTTTTGTTTTACTGATACCTGTGGCAATGACG
TCGCCCACTCGACAACTCGATCATTCCATTAGGTGACCAAGAAGAGCTTC
AAGTTTGCGCAGCAGCACGGGCTGCCATTTTACTTCGTGTCGGCCGCCGA
CGGCACGAACGTCGTCAAGATTTTCGAGGAGGCCATCAAGGTTTGTGCGT
TATTATGGAGGGGCGGGAGGGGCATGCTCAAGTTCTTCTTATAACGCATA
TAAGTTAATTGAAACCCCTCCGAACATTCATTACACCACGGATGGTGACG
TCAAAGGAACTATGACCACCAACTATCCCCAGGTTCGAGTGTGCACACGT
TATTAGCTGTTAGGCGACTGGCCACGCGTCCTCGGAAGGATAGAGCATTA
TTCTCACATAATCAATCGCCAAATGACCAAATCATTCGTTCCTACTTTGA
TGTCAAAGCTGACGCATCATCAGCGTTTTGCCTTCTCAGTCCACACACAC
CTTCATCTGGCTGTCCTGTACTTCAAAAGTATCTCTTATCGAAACCTTGC
ATTCTATTTTCGCCCTTTGTACATAATAGCGGGTATTTCGCCAAAATACC
CCCACACTAATATTACCTACGCTATTTCAGGCACTGTATATATATATATG
TAATATGTAGTCTATATCGTTGATATACGACTGGAAAAGTGCTGGGGACA
AGGTGCAACCTTATGAGGCCATGCTACTGTCGAATAACTGAAGATAGTTA
TCCATCTGCCATCGTCTTCAGCATCCTCCAAATTTTCCCTTGCGTCCATT
ACTAGCATTAACTCATACAGCTGTTTGCAAAGCCCAATAATGAAACAGTA
CACCGGCGGTGCCGTCCTCCATCGGCCTGATATACCCCTACCAATAATGT
TGACTAAACGATGTCTACGTACGCCCCCTCGCTACTTCCATCACTCTCAT
ACGATATAGATCCGGCCGCTAAATATTTACGCAACCCTTCTCACTCTGCG
TTCAACACCAGTACTAACTGTAGTAACATTATTGTGATTGATATCCCCCC
TGCTGCTTGTATAGTTAGTTTCCTATCGCCAGTCTTATCCCCCCCCCCCG
CCTAGTTAAATCATCAGCTGTCATATCAATAGGTGCTGCTGTTCCATTGA
CCCGGGAAATCGCTAGAGGTTACTATTCATAAAAGCATCTTGGTCGGTTA
ACCCGTCCTCCCCCCCCAACACCCCTCTCCGGGTAGAGGATTCGACGCGC
ATTTCTCCAAAAACATGCTCTTGAAGTAATAAAGGGCGAATCCTTGCACT
CATCTTGAGTAAACAGTTAACGATCCCACTTCTACCTTTAATACGCAACG
AGGGTTCGGAAATATTTAGCATATATTACTGAATATTATGGATTATTTAG
CACATATTACTACTTGTTATGGATTATTTAGCACATATTATGGATTATTT
ACCACATATTAGTGCATATTATGGATTATTTGCTGCTGACAGGAAAAAAC
GAACGTATGGGTGTGTGAATGGATTGGTATATAGATCTCGTGTAAGCAAA
ACATTTGATTTGATTTGAGTATTTCGTCAGTTAATTTCAGCACGAGCACA
CATCACAAACAACAGTGAAATATTACTCGTACGACGAGACCAGTGTCAAG
AGAGTTTTCGACTCGAGAGACCAGTGCTGCCTGCGCCTCAACGCTCTTGA
CACCCGCGTAAAAAAAAACAAACGGTGACGACATGCACCGGACCGCGCCG
GCGTCGGGAAAGCACAGCGAAATACATCCGAAAGCTTCTATTAATCCTGT
ACACTCTTTTCCTCCCTCGTGTCCTCTTGTGTCTCGTGAGAGACACGCGA
AAATGCACACACTTCCGCCTTACACTGATGGAGCGGGGGGAGGGGAGGGG
AGGGAAAGGCAACCAACACCAACAGCAATAATTTGACAAAACAACATCGT
GTACACTCGCAGGCTGGGCTGGAGTTCAAGAAAAATGGAGGCGATTTCGT
GGACGAGGCCTTGACCCTCTTGGAGAGCAGCACTATTAATAGCTAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig4770:1265..7560-

>mRNA_H-elongata_contig4770.11904.1 ID=mRNA_H-elongata_contig4770.11904.1|Name=mRNA_H-elongata_contig4770.11904.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1248bp|location=Sequence derived from alignment at H-elongata_contig4770:1265..7560- (Himanthalia elongata Himel1 dioecious)
ATGTGCCAGCGCGAGACAGAGGGCAAGGATCACATGGCGGAGCGTGACGA
AGACGATCTTGAAGAGCCTGATCTGAAGATGTGCCAGCGCGAGACAGAGG
GCAAGGATCACATGGCGGAGCGTGACGAAGACGATCTTGAAGAGCCTGAT
CTGAAGGTAATACTTTTGGGCGACTCTGCCGTGGGAAAGTCTAAGCTCGT
CGAGCGATATCTCATGGACGAGTACAACCCTCGCCAGCTGTCCACGTTCG
CCCTCACGCTCTTCCGAAAAAATGCAAGACTGGAGGACGGCACCGAGGTC
AAAGTAGGTAATACTTTTGGGCGACTCTGCCGTGGGAAAGTCTAAGCTCG
TCGAGCGATATCTCATGGACGAGTACAACCCTCGCCAGCTGTCCACGTTC
GCCCTCACGCTCTTCCGAAAAAATGCAAGACTGGAGGACGGCACCGAGGT
CAAAGTAGACCTGTGGGACACGGCGGGGCAGGAACGGTTCAGCAGCATGC
ACTCTTCATACTACCACCGGGCGCACGCGTCCGTCTTGGTTTTCGATGTG
ACCCGGAAAGCGACGTACAAGAACTTGACGGAGTGGTACGGGGAGCTCAG
GCAGTACTGCGAGAGCATTCCGTGCCTGCTCGTGGCGAACAAGATTGACG
TCGACTACAACACCTGTGGGACACGGCGGGGCAGGAACGGTTCAGCAGCA
TGCACTCTTCATACTACCACCGGGCGCACGCGTCCGTCTTGGTTTTCGAT
GTGACCCGGAAAGCGACGTACAAGAACTTGACGGAGTGGTACGGGGAGCT
CAGGCAGTACTGCGAGAGCATTCCGTGCCTGCTCGTGGCGAACAAGATTG
ACGTCGACTACAACGTGACCAAGAAGAGCTTCAAGTTTGCGCAGCAGCAC
GGGCTGCCATTTTACTTCGTGTCGGCCGCCGACGGCACGAACGTCGTCAA
GATTTTCGAGGAGGCCATCAAGGTGACCAAGAAGAGCTTCAAGTTTGCGC
AGCAGCACGGGCTGCCATTTTACTTCGTGTCGGCCGCCGACGGCACGAAC
GTCGTCAAGATTTTCGAGGAGGCCATCAAGGCTGGGCTGGAGTTCAAGAA
AAATGGAGGCGATTTCGTGGACGAGGCCTTGACCCTCTTGGAGAGCAGCA
CTATTAATAGCTAGGCTGGGCTGGAGTTCAAGAAAAATGGAGGCGATTTC
GTGGACGAGGCCTTGACCCTCTTGGAGAGCAGCACTATTAATAGCTAG
back to top