mRNA_H-elongata_contig4766.11901.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig4766.11901.1
Unique NamemRNA_H-elongata_contig4766.11901.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig4766.11901.1 vs. uniprot
Match: D7FQ58_ECTSI (Flagellar associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ58_ECTSI)

HSP 1 Score: 186 bits (472), Expect = 8.550e-52
Identity = 91/145 (62.76%), Postives = 116/145 (80.00%), Query Frame = 1
Query:    1 LDFGWASVGVEVTRTLLLQNIGKFPAVFFFNAAGLNLIGINIHPTRGLVEPKQSYRLTVTLRAKKERRLDGENITAEIRGGRPAKIALAGHARVPEVSLLEKTFEFGSVTAGGCESLDASLVNQGSIPASLYIDLSQYPEFHVEQ 435
            LDFG ASVGVEV RT++LQN GK PAVFF + A L L+GI + PTRGL++PKQS  +TV LRA +E RLDG  ++A+IRGG+ AKI L G+AR PE+ L +  F+FGS+TAGGCE L+ +LVN+GSIPASL +DLSQ+ EFH+E+
Sbjct: 1011 LDFGRASVGVEVVRTVMLQNTGKSPAVFFASTAELKLVGIGVEPTRGLIQPKQSCAMTVVLRAPRELRLDGVTLSADIRGGKAAKIPLVGNARTPEIFLSQGAFDFGSLTAGGCEPLEVTLVNRGSIPASLQLDLSQHEEFHLER 1155          
BLAST of mRNA_H-elongata_contig4766.11901.1 vs. uniprot
Match: A0A1J4KN47_9EUKA (Uncharacterized protein n=1 Tax=Tritrichomonas foetus TaxID=1144522 RepID=A0A1J4KN47_9EUKA)

HSP 1 Score: 87.0 bits (214), Expect = 4.550e-17
Identity = 50/147 (34.01%), Postives = 79/147 (53.74%), Query Frame = 1
Query:    1 LDFGWASVGVEVTRTLLLQNIGKFPAVFFFNAAGLNLIGINIHPTRGLVEPKQSYRLTVTLRAKKERRLDGENITAEIRGGRPAKIALAGHARVPEVSLLEKTFEFGSVTAGGCESLDASLVNQGSIPASLYIDLSQYPEFHVEQTT 441
            ++FG   +G+  T+TL L+N G+  A+F  + +  N   + I P  G V    S  L +T ++ +    D   +T  I G +P  + + G + +P++ L    FEFG V  G   S+DA + N GSIPA L++DL  +PEF +E  T
Sbjct:  841 VNFGLIPIGIAKTQTLRLKNSGEDDAIFSLSFSNPN--ELQITPLNGRVSSHDSVCLQITYKSIQAHAFDIP-VTISICGSQPLSLNVTGQSELPKIHLHNTEFEFGRVFVGSSSSIDAEISNVGSIPAILFLDLQNHPEFRIEFPT 984          
BLAST of mRNA_H-elongata_contig4766.11901.1 vs. uniprot
Match: A2FVU1_TRIVA (Uncharacterized protein n=1 Tax=Trichomonas vaginalis TaxID=5722 RepID=A2FVU1_TRIVA)

HSP 1 Score: 79.0 bits (193), Expect = 3.020e-14
Identity = 44/147 (29.93%), Postives = 75/147 (51.02%), Query Frame = 1
Query:    1 LDFGWASVGVEVTRTLLLQNIGKFPAVFFFNAAGLNLIGINIHPTRGLVEPKQSYRLTVTLRAKKERRLDGENITAEIRGGRPAKIALAGHARVPEVSLLEKTFEFGSVTAGGCESLDASLVNQGSIPASLYIDLSQYPEFHVEQTT 441
            L FG   +G+  T+ + L+N G   A+F  N  G   + ++  P  G V  +    + ++ +A   +  D   +T  I G  P    +   + +P V +    F+FG V  G  +S++ ++ N G+IPA L++DLSQ+PEF +E  T
Sbjct:  839 LAFGLMPIGILKTQQIRLKNSGDDDAIFSINTNGSRELSVS--PISGKVSARDQQMVQISFKANHAKIFDLP-VTISICGASPITFNVTAQSELPNVCITNTEFDFGRVFVGSYQSIEGTIKNIGAIPAILFLDLSQHPEFRIEYQT 982          
BLAST of mRNA_H-elongata_contig4766.11901.1 vs. uniprot
Match: A2G1P4_TRIVA (Uncharacterized protein n=1 Tax=Trichomonas vaginalis TaxID=5722 RepID=A2G1P4_TRIVA)

HSP 1 Score: 77.4 bits (189), Expect = 1.040e-13
Identity = 39/147 (26.53%), Postives = 76/147 (51.70%), Query Frame = 1
Query:    1 LDFGWASVGVEVTRTLLLQNIGKFPAVFFFNAAGLNLIGINIHPTRGLVEPKQSYRLTVTLRAKKERRLDGENITAEIRGGRPAKIALAGHARVPEVSLLEKTFEFGSVTAGGCESLDASLVNQGSIPASLYIDLSQYPEFHVEQTT 441
            ++FG   +G++ T+++ ++N G   A++  +   +N   + + P  G +   +S    ++ ++      D   +   I G  P    + G + +P V LL   FEFG +  G   S++  + N G+IPA L++DLS +P+F +E +T
Sbjct:  840 VNFGLIPIGIQKTQSIKIKNTGDDDAIYTISYTNVN--ELQVIPQNGRIAAHESQTFQLSFKSLHANPFDIP-VVVSIAGSNPLSFNVMGQSELPSVQLLNSEFEFGRLFVGSSSSIEGCIQNTGNIPAILFLDLSNHPDFRIEFST 983          
BLAST of mRNA_H-elongata_contig4766.11901.1 vs. uniprot
Match: A0A1J4JA25_9EUKA (Uncharacterized protein n=1 Tax=Tritrichomonas foetus TaxID=1144522 RepID=A0A1J4JA25_9EUKA)

HSP 1 Score: 72.0 bits (175), Expect = 7.900e-12
Identity = 46/148 (31.08%), Postives = 76/148 (51.35%), Query Frame = 1
Query:    1 LDFGWASVGVEVTRTLLLQNIGKFPAVFFFNAAGLNLIGINIHPTRGLVEPKQSYRLTVTLRAKKERRLDGENITAEIRGGRPAKIALAGHARVPEVSL-LEKTFEFGSVTAGGCESLDASLVNQGSIPASLYIDLSQYPEFHVEQTT 441
            +DFG  ++GV+ T T+ L+N     A+F    +  +++ I   P +G V+   S  L + +  +K  + D   IT  I G  P +  + GHA +P+VSL   +  +FG +  G        + N G IPA+LY++LS Y  F +  +T
Sbjct:  846 IDFGLITLGVKNTDTIELKNDSDDDAIFSITPSFTDVLSIT--PPKGRVKKHSSTILNIEVTCEKHGKFDLP-ITVTICGAMPLQFRVTGHAEIPQVSLKYSEPLDFGKLYLGSTSKKKLIIENVGIIPATLYLNLSDYKMFTIHYST 990          
BLAST of mRNA_H-elongata_contig4766.11901.1 vs. uniprot
Match: A0A1J4KPN7_9EUKA (Calponin-homology (CH) domain-containing protein n=1 Tax=Tritrichomonas foetus TaxID=1144522 RepID=A0A1J4KPN7_9EUKA)

HSP 1 Score: 70.5 bits (171), Expect = 2.720e-11
Identity = 43/147 (29.25%), Postives = 69/147 (46.94%), Query Frame = 1
Query:    1 LDFGWASVGVEVTRTLLLQNIGKFPAVFFFNAAGLNLIGINIHPTRGLVEPKQSYRLTVTLRAKKERRLDGENITAEIRGGRPAKIALAGHARVPEVSLLEKTFEFGSVTAGGCESLDASLVNQGSIPASLYIDLSQYPEFHVEQTT 441
            ++FG   +G+E    L ++N G   A+F       +   + I P  G V  ++   L V  +A      D   +   I G +     + G + +P VS+    F+FG V  G   S+D S+ N   IPA L++DL+ +PEF +E  T
Sbjct:  842 INFGLIPIGIEKMSQLKVKNTGDDDAIFTVLIPKTSP-ELQISPMNGRVGARECVNLQVVYKAMSAHSFDIP-VNISICGAQQLTFTVTGQSELPNVSISNSEFDFGRVFVGSSGSIDTSISNSSEIPAILFLDLTNHPEFRIEFPT 986          
BLAST of mRNA_H-elongata_contig4766.11901.1 vs. uniprot
Match: A0A8J6DZG9_9EUKA (Flagellar associated protein n=1 Tax=Carpediemonas membranifera TaxID=201153 RepID=A0A8J6DZG9_9EUKA)

HSP 1 Score: 59.7 bits (143), Expect = 1.540e-7
Identity = 45/144 (31.25%), Postives = 69/144 (47.92%), Query Frame = 1
Query:    1 LDFGWASVGVEVTRTLLLQNIGKFPAVFFFNAAGLNLIGINIHPTRGLVEPKQSYRLTVTLRAKKERRLDGENITAEIRGGRPAKIALAGHARVPEVSLLEKT-FEFGSVTAGGCESLDASLVNQGSIPASLYIDLSQYPEFHV 429
            L FG  SVG+E T  + L+N     A +   +A   +  I++ P +G V    +  LTVT+ + K + LD   IT  +RGG    + L    +VP++ +      +FG V      +    L N   IPA L++D S  PEF +
Sbjct:  863 LPFGVISVGMEKTLKVTLKNPRSTEAYYQVGSA---VSAISVTPKQGCVPGGTTAELTVTILSNKAQVLDTP-ITIGVRGGAKQTLQLTADIQVPDIRVTSGLPIDFGRVPVCLTVTKSVQLKNNSPIPALLFVDFSNTPEFAI 1002          
BLAST of mRNA_H-elongata_contig4766.11901.1 vs. uniprot
Match: A0A1J4KVM3_9EUKA (Calponin-homology (CH) domain-containing protein n=1 Tax=Tritrichomonas foetus TaxID=1144522 RepID=A0A1J4KVM3_9EUKA)

HSP 1 Score: 55.1 bits (131), Expect = 6.180e-6
Identity = 37/144 (25.69%), Postives = 65/144 (45.14%), Query Frame = 1
Query:    1 LDFGWASVGVEVTRTLLLQNIGKFPAVFFFNAAGLNLIGINIHPTRGLVEPKQSYRLTVTLRAKKERRLDGENITAEIRGGRPAKIALAGHARVPEVSLLEKTFEFGSVTAGGCESLDASLVNQGSIPASLYIDLSQYPEFHVE 432
            + FG   +       L L+N G  PA+F       +++ I   P++G +  ++   L +++  + E       +T  + G  P    ++  A VP +       +FG +  G   S   S+ N  SIPA++ +DLS  P FH+E
Sbjct:  870 VSFGTIPIDTVKEMRLKLRNFGSDPAIFSVMNPSEDMLKIT--PSKGRINGEELTELYLSIVCR-ESMCFQTKVTIFVCGASPISFIVSAIAEVPMIEFEHPGLDFGKLYVGTTSSKPISISNVSSIPATMILDLSSNPFFHLE 1010          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig4766.11901.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FQ58_ECTSI8.550e-5262.76Flagellar associated protein n=1 Tax=Ectocarpus si... [more]
A0A1J4KN47_9EUKA4.550e-1734.01Uncharacterized protein n=1 Tax=Tritrichomonas foe... [more]
A2FVU1_TRIVA3.020e-1429.93Uncharacterized protein n=1 Tax=Trichomonas vagina... [more]
A2G1P4_TRIVA1.040e-1326.53Uncharacterized protein n=1 Tax=Trichomonas vagina... [more]
A0A1J4JA25_9EUKA7.900e-1231.08Uncharacterized protein n=1 Tax=Tritrichomonas foe... [more]
A0A1J4KPN7_9EUKA2.720e-1129.25Calponin-homology (CH) domain-containing protein n... [more]
A0A8J6DZG9_9EUKA1.540e-731.25Flagellar associated protein n=1 Tax=Carpediemonas... [more]
A0A1J4KVM3_9EUKA6.180e-625.69Calponin-homology (CH) domain-containing protein n... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig4766contigH-elongata_contig4766:135..1218 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score188.0
Seed ortholog evalue3.2e-45
Seed eggNOG ortholog2880.D7FQ58
Preferred nameCHDC2
KEGG rclassRC00299
KEGG koko:K01593
KEGG ReactionR00685,R00699,R00736,R02080,R02701,R04909
KEGG Pathwayko00350,ko00360,ko00380,ko00901,ko00950,ko00965,ko01100,ko01110,ko04726,ko04728,ko05030,ko05031,ko05034,map00350,map00360,map00380,map00901,map00950,map00965,map01100,map01110,map04726,map04728,map05030,map05031,map05034
KEGG ModuleM00037,M00042
EggNOG OGs2CBV6@1,2QQ4Q@2759
EC4.1.1.105,4.1.1.28
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Hectar predicted targeting categoryother localisation
Exons3
Model size441
Cds size441
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig4766.11901.1prot_H-elongata_contig4766.11901.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig4766 135..1218 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930787.4903603-CDS-H-elongata_contig4766:134..3201622930787.4903603-CDS-H-elongata_contig4766:134..320Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4766 135..320 -
1691679570.2119873-CDS-H-elongata_contig4766:134..3201691679570.2119873-CDS-H-elongata_contig4766:134..320Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4766 135..320 -
1622930787.513057-CDS-H-elongata_contig4766:552..6961622930787.513057-CDS-H-elongata_contig4766:552..696Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4766 553..696 -
1691679570.2357085-CDS-H-elongata_contig4766:552..6961691679570.2357085-CDS-H-elongata_contig4766:552..696Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4766 553..696 -
1622930787.5466192-CDS-H-elongata_contig4766:1107..12181622930787.5466192-CDS-H-elongata_contig4766:1107..1218Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4766 1108..1218 -
1691679570.2464802-CDS-H-elongata_contig4766:1107..12181691679570.2464802-CDS-H-elongata_contig4766:1107..1218Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4766 1108..1218 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig4766.11901.1

>prot_H-elongata_contig4766.11901.1 ID=prot_H-elongata_contig4766.11901.1|Name=mRNA_H-elongata_contig4766.11901.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=147bp
LDFGWASVGVEVTRTLLLQNIGKFPAVFFFNAAGLNLIGINIHPTRGLVE
PKQSYRLTVTLRAKKERRLDGENITAEIRGGRPAKIALAGHARVPEVSLL
EKTFEFGSVTAGGCESLDASLVNQGSIPASLYIDLSQYPEFHVEQTT
back to top

mRNA from alignment at H-elongata_contig4766:135..1218-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig4766.11901.1 ID=mRNA_H-elongata_contig4766.11901.1|Name=mRNA_H-elongata_contig4766.11901.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1084bp|location=Sequence derived from alignment at H-elongata_contig4766:135..1218- (Himanthalia elongata Himel1 dioecious)
TTGGACTTCGGATGGGCGTCGGTTGGCGTCGAGGTGACTCGAACTTTGTT GCTACAGAACATCGGCAAGTTTCCGGCGGTGTTTTTCTTCAATGCGGCGG GCCTAAACCTGGTGAGAGAATGTCCCGTAAGTTTTTTTTTGTCAAATCGC TGGTAGTATTCGAATCTAGATTTGTGCGATTCGCTCAATCAGTGGAGGTT TTTGGCGTGGCGTTCGTGGTTGGGGTTTGCTGTTTTTAGCTTATTCGCAA GTCCATTGTTTGCTCAGGTGATATAACGGCGAAGAGGATAAACGTCCGTG TGAAGGAATTCGTACGACTAACAATTCATCGTTTATTTTGTGCCATTGGA AGAAGCTCAATCAACATGGAACGGTACTAGAACTTAGCTTTCCTCTATAT TTCATTAAGGTGCTTCAACTGTATTATGATGAGCTACCCCAGCATTGCCC AAAATGATGTGGAGCTTACTCCCAGCCCTTCTACTTGTTTATTATACTGC CTTTCACACCGGACGCTTCAAGATCGGAATTAATATCCACCCCACCCGCG GCCTGGTTGAGCCTAAGCAGTCCTATCGACTTACGGTGACTTTGCGCGCC AAGAAAGAGCGCCGCCTGGACGGGGAAAACATAACCGCGGAAATCCGTGG CGGTAGACCCGCAAAAGTAAGGTTTCGTTCTGATTAAGTGCACTTCAGGC ATGGGTGGGAGCAGTGTCTCGGATACCACCCTCTTTTTCCTCTCCCCAAG CGCAAGCACGAAAATGTTTATAATTTCGTGAAGCGATCTAACGCCGAAAT GTTTCAAGCTAGCTACGGCCATTTGGGTTAAGGTTCATGGCATATATGTT GAGTATGGCCAGCTCACTTTCCTGTCCCTCTAACCGTCCCTGTATCAGAT CGCTCTTGCGGGTCACGCCCGAGTCCCGGAGGTTTCTCTGCTGGAGAAGA CATTTGAGTTCGGGAGTGTCACTGCCGGCGGTTGCGAATCGCTCGATGCA AGCCTCGTAAATCAGGGCTCCATTCCGGCTTCGCTTTACATAGACCTTTC CCAGTATCCGGAGTTTCACGTCGAGCAAACTACT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig4766:135..1218-

>mRNA_H-elongata_contig4766.11901.1 ID=mRNA_H-elongata_contig4766.11901.1|Name=mRNA_H-elongata_contig4766.11901.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=882bp|location=Sequence derived from alignment at H-elongata_contig4766:135..1218- (Himanthalia elongata Himel1 dioecious)
TTGGACTTCGGATGGGCGTCGGTTGGCGTCGAGGTGACTCGAACTTTGTT
GCTACAGAACATCGGCAAGTTTCCGGCGGTGTTTTTCTTCAATGCGGCGG
GCCTAAACCTGTTGGACTTCGGATGGGCGTCGGTTGGCGTCGAGGTGACT
CGAACTTTGTTGCTACAGAACATCGGCAAGTTTCCGGCGGTGTTTTTCTT
CAATGCGGCGGGCCTAAACCTGATCGGAATTAATATCCACCCCACCCGCG
GCCTGGTTGAGCCTAAGCAGTCCTATCGACTTACGGTGACTTTGCGCGCC
AAGAAAGAGCGCCGCCTGGACGGGGAAAACATAACCGCGGAAATCCGTGG
CGGTAGACCCGCAAAAATCGGAATTAATATCCACCCCACCCGCGGCCTGG
TTGAGCCTAAGCAGTCCTATCGACTTACGGTGACTTTGCGCGCCAAGAAA
GAGCGCCGCCTGGACGGGGAAAACATAACCGCGGAAATCCGTGGCGGTAG
ACCCGCAAAAATCGCTCTTGCGGGTCACGCCCGAGTCCCGGAGGTTTCTC
TGCTGGAGAAGACATTTGAGTTCGGGAGTGTCACTGCCGGCGGTTGCGAA
TCGCTCGATGCAAGCCTCGTAAATCAGGGCTCCATTCCGGCTTCGCTTTA
CATAGACCTTTCCCAGTATCCGGAGTTTCACGTCGAGCAAACTACTATCG
CTCTTGCGGGTCACGCCCGAGTCCCGGAGGTTTCTCTGCTGGAGAAGACA
TTTGAGTTCGGGAGTGTCACTGCCGGCGGTTGCGAATCGCTCGATGCAAG
CCTCGTAAATCAGGGCTCCATTCCGGCTTCGCTTTACATAGACCTTTCCC
AGTATCCGGAGTTTCACGTCGAGCAAACTACT
back to top