mRNA_H-elongata_contig47591.11894.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig47591.11894.1
Unique NamemRNA_H-elongata_contig47591.11894.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig47591.11894.1 vs. uniprot
Match: A0A401GP19_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GP19_9APHY)

HSP 1 Score: 281 bits (718), Expect = 2.950e-84
Identity = 165/483 (34.16%), Postives = 271/483 (56.11%), Query Frame = 1
Query:   16 ATIGEAQASSEWPQWKRAIAREMDGQTARGVWQVVERLKGKRVLGTRVVFKRKIDKDGRIEKYKCHLVAKDFRQVKSIHYEESSSPTSAPTSIRMVLSMIAALGWEARQLDVNMACLEADVEEEIYVELPEAYRDSRKQ--VGLLKKAMYGV----------YGIELEAKGFQRSQADPCVFRWILH--GIVVVAIVVYVDDLLVTSATKRDEEQAVRDLCSCFPIKDLGEAPYYLLCHITRDRNAGTLKFDQHQYIQTVAERFGVTKA-SIVLPTAGGKALSKSDSPQTDAEVDEMRQIPYREIVGALLWAATMTRPDISFTARQLAKFNDNPGPTH*MEAQKVLQYLWRTRDLGITYGWEPGGGKLLAWVDADYGTFPDTRRSVSGGAVMMAGGAISWFSRMQKVRAVASSESEYVALA*MVNELRFLRQVKEFMTFP--IDAAIKIHEDNEGTIKMAKNRFSSRRTRHVDIKYHIVRDAI 1413
            A++ EA  S+EWP+WK AI +EM    + G + +VE  K   ++G++ VF+ K + +  IE YK  LVA+ F QV  I + E+ +P +   SI ++L++ A   WE  Q+DV  A L  D+EEEIY++ P    +  K+  V  LK+ +YG+             EL + G  RS+ D CVF W+ +   ++++ I + VDD  + + TK       R++ + F + DLGE  + L   + RDR+  TL   QH YI  +  RF +  A S+  P   G  LS    P T  + ++M+ IPYRE++G+L++AA  TRPDI++    L++F  NPG  H   A++V +YL  TR+  +T+G    G  +  + DAD+G+  + R S+SG   ++ G A+SW ++ Q V A++S+E+EY+A+     E  +L  +   +  P  +   +++H DN+  I +AK+     RT+H+DI++H +   +
Sbjct:  113 ASLNEAMQSTEWPKWKEAIVKEMQNLDSHGTYTLVEPPKNTNIVGSKFVFRIKHNAEREIESYKARLVAQGFTQVPGIDFNETFAPVAKLASIHLILALAACYDWELHQMDVKGAYLNGDLEEEIYMQQPPGQAEPGKEHLVCRLKRPLYGLKQSGRQFHKKISGELGSMGLTRSKVDHCVF-WLRNEEDVLILLIALSVDDSTI-AGTKAAVFWFKREISTRFKMSDLGEMHWILGIEVQRDRDVRTLSLSQHVYIDMILTRFNLQDAKSLTTPLDPGTVLSIHQCPSTPRQFEDMKNIPYREVIGSLMYAALGTRPDIAYAITALSQFMQNPGQPHWEAAKRVFRYLAGTRERWLTFGETTDG--VEGFSDADWGS-AEHRHSISGYVFLLDGSAVSWSAKKQNVVALSSTEAEYIAITHATKEALWLHSLLADVLHPDILRYPVRLHSDNKSVIALAKDDAYHARTKHIDIRFHFIHKTV 590          
BLAST of mRNA_H-elongata_contig47591.11894.1 vs. uniprot
Match: H3H572_PHYRM (Uncharacterized protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H572_PHYRM)

HSP 1 Score: 290 bits (743), Expect = 1.570e-83
Identity = 168/483 (34.78%), Postives = 274/483 (56.73%), Query Frame = 1
Query:    4 DPESATIGEAQASSEWPQWKRAIAREMDGQTARGVWQVVERLKGKRVLGTRVVFKRKIDKDGRIEKYKCHLVAKDFRQVKSIHYEESSSPTSAPTSIRMVLSMIAALGWEARQLDVNMACLEADVEEEIYVELPEAYRDSRKQVGLLKKAMYG-----------VYGIELEAKGFQRSQADPCVF-RWILHGIVVVAIVVYVDDLLVTSATKRDEEQAVRDLCSCFPIKDLGEAPYYLLCHITRDRNAGTLKFDQHQYIQTVAERFGVTKA-SIVLPTAGGKALSKSDSPQTDAEVDEMRQIPYREIVGALLWAATMTRPDISFTARQLAKFNDNPGPTH*MEAQKVLQYLWRTRDLGITYGWEPGGGKLLAWVDADYGTFPDTRRSVSGGAVMMAGGAISWFSRMQKVRAVASSESEYVALA*MVNELRFLRQVKEFMTFPIDAAIKIHEDNEGTIKMAKNRFSSRRTRHVDIKYHIVRDAI 1413
            D    T  +A  S+E  +W +A+  E+      G W +V R  G R +G R VF +K ++ GR+ +YK  LVAK F+Q   + + E+ SP +   SIR+VLS++ A  +   QLD + A L +D++E++++E+P    ++   +  L KA+YG           ++ + ++  GF    AD CV+ +      V V +  YVDD+++ + T ++ ++    L S F +K+LGE  + L   I  DR A TL   Q +YI  V  RF    A ++V P   G  L+K  SP T+AE ++MR  PYR ++G LL+  T TRPD+++   QL++F +NPG  H   A +VL+YL  T++ GI Y    G   + A+ DAD+G+  D RRSVSG  +M+ G  + + S+ Q+  A++S+E+EY+AL+    E+ + R + + +      A ++ EDN+G I +A N   + RT+HVDI++H +R+ +
Sbjct:  834 DDAPTTYQQAMKSNEASKWIKAMNSELKAHADNGSWTLVRRTSGARPIGCRWVFAKKRNEHGRVVRYKARLVAKGFKQKFGVDFFETYSPVANMNSIRVVLSVVVAKAYVTEQLDADTAFLNSDLKEQVFMEVPYGILNAEHMMCKLDKAIYGLKQAASAWHQTIHAVFMKI-GFHSCGADQCVYVKGTKDNYVYVCL--YVDDMIIAAKTNKEIDEVKMALKSAFKMKELGEVKFILGMEIDHDRTASTLMIKQTRYIDDVTSRFNQQDAKAVVNPCESGMKLTKMQSPTTNAEREDMRNKPYRSLIGCLLYITTCTRPDVAYIVTQLSRFLENPGQQHWKAAIRVLRYLKTTKEFGIVYNGNNGKVAMEAYTDADWGSNLDDRRSVSGIMIMVGGAPVIFKSKYQRTVALSSAEAEYMALSLCTQEVLWTRTMLKDLGHEQVGATQVWEDNQGAIALASNAGYNARTKHVDIRHHFIRENV 1313          
BLAST of mRNA_H-elongata_contig47591.11894.1 vs. uniprot
Match: A0A401GN13_9APHY (Uncharacterized protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GN13_9APHY)

HSP 1 Score: 291 bits (744), Expect = 1.590e-83
Identity = 171/483 (35.40%), Postives = 276/483 (57.14%), Query Frame = 1
Query:   16 ATIGEAQASSEWPQWKRAIAREMDGQTARGVWQVVERLKGKRVLGTRVVFKRKIDKDGRIEKYKCHLVAKDFRQVKSIHYEESSSPTSAPTSIRMVLSMIAALGWEARQLDVNMACLEADVEEEIYVELPEAYRDSRKQ--VGLLKKAMYGV----------YGIELEAKGFQRSQADPCVFRWILH--GIVVVAIVVYVDDLLVTSATKRDEEQAVRDLCSCFPIKDLGEAPYYLLCHITRDRNAGTLKFDQHQYIQTVAERFGVTKA-SIVLPTAGGKALSKSDSPQTDAEVDEMRQIPYREIVGALLWAATMTRPDISFTARQLAKFNDNPGPTH*MEAQKVLQYLWRTRDLGITYGWEPGGGKLLAWVDADYGTFPDTRRSVSGGAVMMAGGAISWFSRMQKVRAVASSESEYVALA*MVNELRFLRQVKEFMTFP--IDAAIKIHEDNEGTIKMAKNRFSSRRTRHVDIKYHIVRDAI 1413
            A++ EA  S+EWP+WK AIA+EM    + G + +VE  K   ++G++ VF+ K + +G IE YK  LVA+ F QV  I + E+ +P +   SIR++L++ A   WE  Q+DV  A L  D+EEEIY+  P    +  K+  V  LK+ +YG+             EL + G  RS+ D CVF W+ +   ++++ I + VDD  + + TK       R++ + F + DLGE  + L   + RDR+A TL   Q  YI  +  RF +  A S+  P   G  LS    P T  + ++M+ IPYRE +G+L++AA  TRPDI++    L++F  NPG  H   A++V +YL  TR+  +T+G    G  +  + DAD+G+  + R S+SG   ++ GGA+SW ++ Q V A++S+E+EY+A+     E  +LR +   +  P  +   +++H DN+  I +AK+     RT+H+DI++H +R+ +
Sbjct:  923 ASLNEAMQSTEWPKWKEAIAKEMQNLDSHGTYTLVEPPKNTNIVGSKFVFRIKHNAEGEIESYKARLVAQGFTQVPGIDFNETFAPVAKLASIRLILALAARYDWELHQMDVKGAYLNGDLEEEIYMRQPPGQAEPGKEHLVCRLKRPLYGLKQSGRQFHKKISGELGSMGLTRSKVDHCVF-WLRNEEDVLILLIALSVDDSTI-AGTKAAVFWFKREISTRFEMSDLGEMHWILGIEVRRDRDARTLSLSQRAYIDMILTRFNLQDAKSLTTPLDPGTVLSIHQCPSTPRQFEDMKNIPYREAIGSLMYAALGTRPDIAYAVTALSQFMQNPGRPHWEAAKRVFRYLAGTRERWLTFGETTDG--VEGFSDADWGS-AEHRHSISGYVFLLDGGAVSWSAKKQNVVALSSTEAEYIAITHATKEALWLRSLLADVLHPDILRYPVRLHSDNKSAIALAKDDAYHARTKHIDIRFHFIRETV 1400          
BLAST of mRNA_H-elongata_contig47591.11894.1 vs. uniprot
Match: A0A2G8RWY5_9APHY (Transcription factor n=1 Tax=Ganoderma sinense ZZ0214-1 TaxID=1077348 RepID=A0A2G8RWY5_9APHY)

HSP 1 Score: 289 bits (740), Expect = 7.060e-83
Identity = 177/486 (36.42%), Postives = 267/486 (54.94%), Query Frame = 1
Query:   19 TIGEAQASSEWPQWKRAIAREMDGQTARGVWQVVERLKGKRVLGTRVVFKRKIDKDGRIEKYKCHLVAKDFRQV--KSIHYEESSSPTSAPTSIRMVLSMIAALGWEARQLDVNMACLEADVEEEIYVELPEAYRDSRKQ--VGLLKKAMYGV----------YGIELEAKGFQRSQADPCVFRWILHGIVVVAIVVYVDDLLVTSATKRDEEQAVRDLCSCFPIKDLGEAPYYLLCHITRDRNAGTLKFDQHQYIQTVAERFGVTKAS-IVLPTAGGKALSKSDSPQTDAEVDEMRQIPYREIVGALLWAATMTRPDISFTARQLAKFNDNPGPTH*MEAQKVLQYLWRTRDLGITYGWEPGGGKLLAWVDADYGTFPDTRRSVSGGAVMMAGGAISWFSRMQKVRAVASSESEYVALA*MVNELRFLRQV------KEFMTFPIDAAIKIHEDNEGTIKMAKNRFSSRRTRHVDIKYHIVRDAI 1413
            T+ EA+ S +WPQW+RAI  E D      V+ +VE      ++G+++VF+ K D +G +  +K  LVA+ F QV  +  H +E+ +P S   SIR +LS+ A   WE RQ+DV  A L   +EE +Y+ LP  +    +   V  LKK +YG+              +E  GF R  AD  VF +   G   + +   VDDL +T  +   +  AV D+   F + DLG+  + L   + RDR A T+   Q  YI T+  RF + +A+ + +P   G  L    SP T  + ++MR +PYRE VG+L++AA  TRPDI+F    L++F  NPG  H    ++VL+YL  +R+L + YG    G  L  + DAD+G+  + R S+SG    + GGAISW S+ Q V A++S+E+EY+AL     E  +LR V       E  TFP+    ++H DN   I +AK+     RT+H+DI++H +R+A+
Sbjct: 1030 TLEEARQSPDWPQWQRAIDAEYDNLRRHDVFDLVEPPPDANIVGSKLVFRVKHDAEGAVSGFKARLVAQGFSQVPGRDYHDDETFAPVSRLPSIRTILSLAARHDWELRQMDVKSAYLNGILEETVYMRLPPGFAPPEQSHLVCRLKKTLYGLKQAGRGWYKTLTAAMENMGFTRCVADHAVF-YKREGESAIIVAASVDDLTITGTSDLVDAFAV-DIKQRFEMSDLGDLHWILGIEVRRDRQARTIAISQRSYIDTIVSRFNLDEAAPLSIPLQPGSPLGNHQSPSTPRQFEDMRDVPYREAVGSLMYAAMGTRPDITFAVTALSQFMQNPGRAHWDALKRVLRYLKGSRELWLVYGTNNEG--LRGYSDADWGSSTEHRHSISGYVFTLDGGAISWSSKKQNVVALSSTEAEYIALTHATKEAIWLRYVLSDILHPELATFPV----RLHSDNRSAIALAKDNAFHSRTKHIDIRFHFIREAV 1507          
BLAST of mRNA_H-elongata_contig47591.11894.1 vs. uniprot
Match: A0A6A3Q908_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=8 Tax=Phytophthora TaxID=4783 RepID=A0A6A3Q908_9STRA)

HSP 1 Score: 274 bits (701), Expect = 4.110e-82
Identity = 176/491 (35.85%), Postives = 270/491 (54.99%), Query Frame = 1
Query:   19 TIGEAQASSEWPQWKRAIAREMDGQTARGVWQVVERLKGKRVLGTRVVFKRKIDKDGRIEKYKCHLVAKDFRQVKSIHYEESSSPTSAPTSIRMVLSMIAALGWEARQLDVNMACLEADVEEEIYVELPEAYRD---------SRKQVGLLKKAMYGVYGIE----------LEAKGFQRSQADPCVF-RWILHGIVVVAIVVYVDDLLVTSATKRDEEQAVRDLCSCFPIKDLGEAPYYLLCHITRDRNAGTLKFDQHQYIQTVAERFGVTKASIVL-PTAGGKALSKSDSPQTDAEVDEMRQIPYREIVGALLWAATMTRPDISFTARQLAKFNDNPGPTH*MEAQKVLQYLWRTRDLGITY----GWEPGGGKLLAWVDADYGTFPDTRRSVSGGAVMMAGGAISWFSRMQKVRAVASSESEYVALA*MVNELRFLRQV-KEFMTFPIDAAIKIHEDNEGTIKMAKNRFSSRRTRHVDIKYHIVRDAI 1413
            T  EA    +  +WK+AIA E+        W++V +   +R +G R VF  K ++ G++ +YK  LVAK + Q   I YEE+ SP +   S+R +L+   A G E  Q DV+ A L  ++EEEIY+ELPE  R+             V +L +++YG+              L++ GF+ + ADPCV+ R    G  +V +  YVDD+L+ S  K         +   F IKDLG A + +   I  D    TL   Q  Y +++ ++FG   A   L P   G  L+K+D PQT+ +  +M+  PYR +VG+L++ A  TRPDIS    +L++F +NPG  H     KV++YL +T+D+GI Y    G +P      A+ DAD+    D RRSVSG  +M+ G  + W S  QK  A++S+E+EY+AL+  V E  ++R++ KE     + A + I+EDN+G + +AKN     RT+H+DI+YH +R+ +
Sbjct:   68 TYAEATTRHDQDEWKKAIASELKSLIVNKTWKLVPKPAHQRPIGCRWVFALKRNEKGQVVRYKARLVAKGYSQRHGIDYEEAYSPVAYLNSVRAMLAKCGAEGMEIEQCDVDTAFLYGELEEEIYMELPEGLRELLDLAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKHLKSTGFEPADADPCVYTRGEGEGECIVCL--YVDDMLIASRQKAVIASVKAGIAEKFRIKDLGRARFIVGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGVQLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGLLGTQPE-----AYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRRLLKEIGAEQVGATV-IYEDNQGAMALAKNVGYQARTKHIDIRYHFIREKV 550          
BLAST of mRNA_H-elongata_contig47591.11894.1 vs. uniprot
Match: A0A8H7NVE6_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Postia placenta TaxID=104341 RepID=A0A8H7NVE6_9APHY)

HSP 1 Score: 273 bits (697), Expect = 3.290e-80
Identity = 173/484 (35.74%), Postives = 272/484 (56.20%), Query Frame = 1
Query:    1 LDPESATIGEAQASSEWPQWKRAIAREMDGQTARGVWQVVERLKGKRVLGTRVVFKRKIDKDGRIEKYKCHLVAKDFRQVKSIHYEESSSPTSAPTSIRMVLSMIAALGWEARQLDVNMACLEADVEEEIYVELPEAYRDSRKQ--VGLLKKAMYGVYGI---------EL-EAKGFQRSQADPCVFRWILHGIVVVAIVVYVDDLLVTSATKRDEEQAVRDLCSCFPIKDLGEAPYYLLCHITRDRNAGTLKFDQHQYIQTVAERFGVTKA-SIVLPTAGGKALSKSDSPQTDAEVDEMRQIPYREIVGALLWAATMTRPDISFTARQLAKFNDNPGPTH*MEAQKVLQYLWRTRDLGITYGWEPGGGKLLAWVDADYGTFPDTRRSVSGGAVMMAGGAISWFSRMQKVRAVASSESEYVALA*MVNELRFLRQVKEFMTFPIDAAIKIHEDNEGTIKMAKNRFSSRRTRHVDIKYHIVRDAI 1413
            ++ +  T  EA A  E   W+ A+  E+    A G +++VE+ KG  V+G   V ++K D++  + K+K  L A+ F QV  + Y+++++PT+   S+R+VL++ AA  WE  Q+D   A L  D++E IY+  P  +    ++  +  L KA+YG+            EL +  G  RS  D  VF   L GI+++ IV++VDD  + + TKR  +   + L + F I DLGEA + L   I R+R   T+   Q  YI TV +RF +T A ++ +P      L   +   TD E  EM + PY  +VG+L++AA  TRPDI+F    LA+F  NP P H   A++VL+YL  TRDL +T+G    G  L  + DAD+ + P  R S+SG   +   GAI+W SR Q + A++S+E+EY+A +    EL +LR +   +T    A+I +  DN+  I +AKN   + RT+H+D++YH +R+ +
Sbjct:  216 MNGDEPTYREAMAGPESEDWRVAMEEELAKIEAMGTYELVEKPKGANVVGCVWVLRKKRDENNEVAKFKARLCAQGFSQVHGVDYDQTAAPTARLASLRLVLALAAANDWEVHQIDFKNAYLNGDLDETIYMRQPPGFEVPGREDWIWRLLKALYGLKQAGRLWYQKICELFDEIGLSRSCHDFGVFFLFLPGIIII-IVIHVDDCTLVTNTKRIMDDLKKQLGARFEIVDLGEARWLLGFEIHRNRATRTISLSQASYIDTVLDRFHMTDAYTLTIPMDPHVTLHGLEL--TDDERREMARKPYARLVGSLMYAAIGTRPDIAFAVSTLAQFMANPAPVHWEAAKRVLRYLKGTRDLRLTFGLSTDG--LTGYSDADWASQPH-RHSISGHVFLFTSGAITWSSRKQPIIALSSTEAEYIAASDTTRELLWLRALFAELTSSSPASIPLFSDNQSAITIAKNGLLNARTKHIDLRYHFIREVL 693          
BLAST of mRNA_H-elongata_contig47591.11894.1 vs. uniprot
Match: A0A1M2V3W8_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2V3W8_TRAPU)

HSP 1 Score: 274 bits (701), Expect = 1.470e-79
Identity = 169/492 (34.35%), Postives = 266/492 (54.07%), Query Frame = 1
Query:   10 ESATIGEAQASSEWPQWKRAIAREMDGQTARGVWQVVERLKGKRVLGTRVVFKRKIDKDGRIEKYKCHLVAKDFRQVKSIHYEESSSPTSAPTSIRMVLSMIAALGWEARQLDVNMACLEADVEEEIYVELPEAYRDSRKQVGLLKKAMYG-----------VYGIELEAKGFQRSQADPCVF-RWILHGIVVVAIVVYVDDLLVTSATKRDEEQAVRDLCSCFPIKDLGEAPYYLLCHITRDRNAGTLKFDQHQYIQTVAERFGVTKAS-IVLPTAGGKALSKSDSPQTDAEVDEMRQIPYREIVGALLWAATMTRPDISFTARQLAKFNDNPGPTH*MEAQKVLQYLWRTRDLGITYGWEPGGG-----------KLLAWVDADYGTFPDTRRSVSGGAVMMAGGAISWFSRMQKVRAVASSESEYVALA*MVNELRFLRQVKEFMTFPIDAAIKIHEDNEGTIKMAKNRFSSRRTRHVDIKYHIVRDAI 1413
            E  T+ EAQA+ EWP+WKRA+  E+      G +   +   G++ +G R V++ K D DGRI +YK  LVA+ F Q   + Y E+ +P     S+R++L++ A    E  Q DV  A L AD++EEIY+  P  Y +    +  L+KA+YG           +  +     GFQR  +DPCV+ +    G+ +V +  +VDD+   + T    +     L   + I DLG     L   I+RDR   TL   Q QYIQTV +RF +   + +  P      L K      DA++ EM+ +PY+ ++G+L++AA  TRPDIS+  + L++++  PG TH   A++VL+YL  T+D GI Y    G G           +L  + DAD+G  PD RRS+SG A ++  G I+W S+ Q   A++S E+EY+A+A       ++R +   +TF    A K++ DN+  I ++K+     R++ +DI++H +R+ I
Sbjct:   14 EPRTLSEAQAAPEWPEWKRAMDDEIAQLRKLGTYAPADLPAGRKPIGCRWVYRLKRDSDGRIVRYKARLVAQGFSQAPGLDYFETFAPVIRTDSLRLLLAIAAERNMELAQFDVVGAYLNADLDEEIYMRQPPGYEEGSSPIVRLRKALYGLKQAGXQWNHHINKVLTADLGFQRLNSDPCVYLKKSPKGLTIVGM--HVDDMAALADTPDLMDTLRSGLARHYKITDLGTPRLLLGFEISRDRKKRTLSIKQSQYIQTVLDRFKMADCNPVTTPLDPNVKLCKEPE---DADLSEMKGVPYQALIGSLMYAALGTRPDISYAVQALSQYSARPGITHWTAAKRVLRYLKGTQDFGILYS---GKGETRIRAYYDNFRLEGYSDADWGANPDDRRSISGYAYLVGNGIIAWSSKKQTTVALSSMEAEYMAIAYAARHAIWVRAILAELTFTQPRATKLNADNQSAIALSKDTVQHARSKXIDIRHHFIRECI 497          
BLAST of mRNA_H-elongata_contig47591.11894.1 vs. uniprot
Match: A0A182HDZ7_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Aedes albopictus TaxID=7160 RepID=A0A182HDZ7_AEDAL)

HSP 1 Score: 265 bits (678), Expect = 1.990e-79
Identity = 168/483 (34.78%), Postives = 261/483 (54.04%), Query Frame = 1
Query:    4 DPESATIGEAQASSEWPQWKRAIAREMDGQTARGVWQVVERLKGKRVLGTRVVFKRKIDKDGRIEKYKCHLVAKDFRQVKSIHYEESSSPTSAPTSIRMVLSMIAALGWEARQLDVNMACLEADVEEEIYVELPEAY--RDSRKQVGLLKKAMYG------VYGIELEAK----GFQRSQADPCVFRWILHGIVVVAIVVYVDDLLVTSATKRDEEQAVRDLCSCFPIKDLGEAPYYLLCHITRDRNAGTLKFDQHQYIQTVAERFGVTKASIV-LPTAGGKALSKSDSPQTDAEVDEMRQIPYREIVGALLWAATMTRPDISFTARQLAKFNDNPGPTH*MEAQKVLQYLWRTRDLGITYGWEPGGGKLLAWVDADYGTFPDTRRSVSGGAVMMAGGAISWFSRMQKVRAVASSESEYVALA*MVNELRFLRQVKEFMTFPIDAAIKIHEDNEGTIKMAKNRFSSRRTRHVDIKYHIVRDAI 1413
            D +  T  EA +  +  +W  A+  E D       W + E  KG+  +  + V+K K D  G++++YK  LV K + Q K + Y+E+ SP    +S+R + +M A    +  Q+D   A L+ D+EEEIY+E P  +     R+ V  L KA+YG      V+  +L+A     G  +S+ DPC++ WI  G V+  + VYVDD+L+ S     +      L S F +KDLG A   L   ITR +  G++  DQ  YI ++  RF +  A  V  P    + LSK  SP T  E + M+ IPY+E VG L++ A  TRPDI FT   L++FN   GP H    + + +YL  T+ + + Y    G  KL+ + DAD+ +  D RRS SG   ++ GGA+SW  + Q   ++++ E+EY++L+  V E  + R +     F    AI++  DN+ TI +A+N   + RT+H+DI++H +RDA+
Sbjct:   14 DDDPVTHQEALSRDDSGRWTTAMKEEYDALINNNTWTLTELPKGRSAIKCKWVYKTKHDASGKVDRYKARLVIKGYSQRKGVDYDETYSPVVRHSSLRYLFAMAAKYNLQVDQMDAITAFLQGDIEEEIYMEQPPCFVKPGGRQLVCRLNKALYGLKQSSRVWNTKLDAALKKLGLHQSEFDPCLYYWIEDGKVLF-VAVYVDDVLIFSNDAALKNNLKAKLSSTFRMKDLGSAVSCLGIRITRAK--GSVSLDQEAYIDSMLRRFNMQDAKTVSTPMNTAEKLSKEMSPNTPEETERMKNIPYQEAVGCLMYLAQCTRPDILFTVNLLSRFNCCYGPKHWEAVKHLFRYLKGTKTIRLKYS-AAGDSKLVGYSDADWASDLDDRRSKSGYVFLLQGGAVSWCCKRQSTVSLSTCEAEYMSLSAAVQEASWWRGLVS--QFGETDAIELRCDNQSTICIARNGGYTPRTKHIDIRHHYIRDAL 490          
BLAST of mRNA_H-elongata_contig47591.11894.1 vs. uniprot
Match: A0A060SPD4_PYCCI (Integrase catalytic domain-containing protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SPD4_PYCCI)

HSP 1 Score: 278 bits (711), Expect = 3.030e-79
Identity = 165/475 (34.74%), Postives = 269/475 (56.63%), Query Frame = 1
Query:   19 TIGEAQASSEWPQWKRAIAREMDGQTARGVWQVVERLKGKRVLGTRVVFKRKIDKDGRIEKYKCHLVAKDFRQVKSIHYEESSSPTSAPTSIRMVLSMIAALGWEARQLDVNMACLEADVEEEIYVELP--EAYRDSRKQVGLLKKAMYGVYG----------IELEAKGFQRSQADPCVFRWILHGIVVVAIVVYVDDLLVTSATKRDEEQAVRDLCSCFPIKDLGEAPYYLLCHITRDRNAGTLKFDQHQYIQTVAERFGVTKASIV-LPTAGGKALSKSDSPQTDAEVDEMRQIPYREIVGALLWAATMTRPDISFTARQLAKFNDNPGPTH*MEAQKVLQYLWRTRDLGITYGWEPGGGKLLAWVDADYGTFPDTRRSVSGGAVMMAGGAISWFSRMQKVRAVASSESEYVALA*MVNELRFLRQVKEFMTFPIDAAIKIHEDNEGTIKMAKNRFSSRRTRHVDIKYHIVR 1404
            +  EA+   +WP+W+ AI  E+D   A G W++V R     V+ ++ V + K +  G I+KYK  LVA+ F QV  + Y ++ +P +  +SIR++L++ A  GW A   D N A L + ++E++Y+E P   A+ D +  V  L+KA+YG+              L   GF R +AD  VF +   G  ++ + V+VDD L+T +++R  +     + + + I DLG   + L   I+ D  AGTL   QH YI+ +  RF  T    V +P    + LSK+  P++ AEV  MR++PYRE +GAL++AA  TRPDI+F    LA+F  NPG  H    +++ +YL  TR L + YG +    +L  +V+AD G   + RR+++G   ++ GGA+SW S+ Q++  ++++ESEYVA      E  +LR++   +  P+  A  ++ DN+  I + K+     RT+H+D++YH +R
Sbjct:  800 SYAEAKKRPDWPKWQEAIKAELDSLVANGTWRIVPRPSSGNVVDSKWVLRVKKNAAGEIDKYKARLVARGFTQVYGVDYYDTFAPVAKLSSIRLLLAIAARNGWAADSFDFNSAYLNSKLDEDVYLEQPPDHAFADRKAFVLKLEKALYGLKQGGRKWYETLCAALGRLGFTRVEADWGVF-YKHEGEHLIVLAVHVDDCLLTGSSRRLLDDTKSKIGTVYKITDLGPVSWLLGIKISCDLEAGTLSLSQHAYIEALLARFNFTDLKPVSMPMDPHQLLSKTQCPESPAEVARMRRVPYREAIGALMYAALGTRPDIAFAVSTLAQFAQNPGQPHWDAVKRIFRYLLGTRTLSLIYGGQQR--ELEGYVNAD-GATQEHRRAITGYVFLVDGGAVSWASKKQELVTLSTAESEYVAATHAAKEAIWLRRLIGEVFGPLSNATMLYSDNQAAIALTKDGSYHARTKHIDVRYHFIR 1270          
BLAST of mRNA_H-elongata_contig47591.11894.1 vs. uniprot
Match: A0A438HUL4_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HUL4_VITVI)

HSP 1 Score: 265 bits (676), Expect = 4.140e-79
Identity = 162/486 (33.33%), Postives = 269/486 (55.35%), Query Frame = 1
Query:    1 LDPESATIGEAQASSEWPQWKRAIAREMDGQTARGVWQVVERLKGKRVLGTRVVFKRKIDKDGRIEKYKCHLVAKDFRQVKSIHYEESSSPTSAPTSIRMVLSMIAALGWEARQLDVNMACLEADVEEEIYVELPEAYR--DSRKQVGLLKKAMYGV----------YGIELEAKGFQRSQADPCVFRWILHGIVVVAIVVYVDDLLVTSATKRDEEQAVRDLCSCFPIKDLGEAPYYLLCHITRDRNAGTLKFDQHQYIQTVAERFGVTK-ASIVLPTAGGKALSKSDSPQTDAEVDEMRQIPYREIVGALLWAATMTRPDISFTARQLAKFNDNPGPTH*MEAQKVLQYLWRTRDLGITYGWEPGGGKLLAWVDADYGTFPDTRRSVSGGAVMMAGGAISWFSRMQKVRAVASSESEYVALA*MVNELRFLRQVKEFMTFP--IDAAIKIHEDNEGTIKMAKNRFSSRRTRHVDIKYHIVRDAI 1413
            L+ +  ++ + + SS   +W +A+  EM      GVW +VE  KG + +G + +FK K D  G I +YK  LVAK F Q + I Y+E+ SP S+  S R++++++A    E  Q+DV  A L  +++E IY+  PE +   DS++ V  LK+++YG+          +   + + GF+ +  D C++     G   + +V+YVDD+L+ S+      + +R L S F +KDLG A + L   I RDR+ G L   Q  YI  V  RFG++  A    P A G   S    P+ + E  +M + PY   VG+L++A   TRPDI++    L ++  NPG  H  +A++V++YL RT+D  +TY       +++A+ D+D+    D+RRS SG   M+AGGA+SW S  Q + A ++ E+E++A     N   +LR     +     I+  ++I+ DN+     +KN  SS +++H+DIK+ +V++ +
Sbjct:    3 LEDDPISLSQVKQSSNSEKWIKAMKDEMKSMKDNGVWDLVELPKGVKPIGCKWIFKTKRDSKGNIVRYKARLVAKGFTQKEGIDYKETFSPVSSKDSFRIIMALVAHYDLELHQMDVKTAFLNGNIDETIYMVQPENFESNDSKQLVCRLKRSIYGLKQASRQWYRKFDQVITSFGFKENTVDQCIYLK-FSGSKFIILVLYVDDILLASSDVGLLHETMRFLSSKFDMKDLGNASFVLGIQIHRDRSRGILGLSQKAYIDKVLSRFGMSNYAPGDTPVAKGDKFSLHQCPKNELEKKDMERFPYASAVGSLMYAQVCTRPDIAYIVGMLGRYLSNPGMDHWKKAKRVMRYLQRTKDYMLTYR-RSSHLEIVAYSDSDFAGCLDSRRSTSGCIFMLAGGAVSWKSVKQTLVASSTMEAEFIACYEASNHGIWLRNFVTQLRIVDGIEKPLRINCDNKAAELYSKNNRSSSKSKHIDIKFLVVKERV 486          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47591.11894.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A401GP19_9APHY2.950e-8434.16Reverse transcriptase Ty1/copia-type domain-contai... [more]
H3H572_PHYRM1.570e-8334.78Uncharacterized protein n=2 Tax=Phytophthora ramor... [more]
A0A401GN13_9APHY1.590e-8335.40Uncharacterized protein n=1 Tax=Sparassis crispa T... [more]
A0A2G8RWY5_9APHY7.060e-8336.42Transcription factor n=1 Tax=Ganoderma sinense ZZ0... [more]
A0A6A3Q908_9STRA4.110e-8235.85Retrovirus-related Pol polyprotein from transposon... [more]
A0A8H7NVE6_9APHY3.290e-8035.74Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1M2V3W8_TRAPU1.470e-7934.35Retrovirus-related Pol polyprotein from transposon... [more]
A0A182HDZ7_AEDAL1.990e-7934.78Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A060SPD4_PYCCI3.030e-7934.74Integrase catalytic domain-containing protein n=1 ... [more]
A0A438HUL4_VITVI4.140e-7933.33Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig47591contigH-elongata_contig47591:471..1913 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score190.3
Seed ortholog evalue1.3e-45
Seed eggNOG ortholog164328.Phyra85763
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size1413
Cds size906
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig47591.11894.1prot_H-elongata_contig47591.11894.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig47591 897..1832 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930786.6853619-UTR-H-elongata_contig47591:470..8961622930786.6853619-UTR-H-elongata_contig47591:470..896Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47591 471..896 -
1691679569.8364477-UTR-H-elongata_contig47591:470..8961691679569.8364477-UTR-H-elongata_contig47591:470..896Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47591 471..896 -
1622930786.7515092-UTR-H-elongata_contig47591:1832..19131622930786.7515092-UTR-H-elongata_contig47591:1832..1913Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47591 1833..1913 -
1691679569.8663685-UTR-H-elongata_contig47591:1832..19131691679569.8663685-UTR-H-elongata_contig47591:1832..1913Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47591 1833..1913 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930786.7190807-CDS-H-elongata_contig47591:896..14181622930786.7190807-CDS-H-elongata_contig47591:896..1418Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47591 897..1418 -
1691679569.847161-CDS-H-elongata_contig47591:896..14181691679569.847161-CDS-H-elongata_contig47591:896..1418Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47591 897..1418 -
1622930786.7364533-CDS-H-elongata_contig47591:1448..18321622930786.7364533-CDS-H-elongata_contig47591:1448..1832Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47591 1449..1832 -
1691679569.855742-CDS-H-elongata_contig47591:1448..18321691679569.855742-CDS-H-elongata_contig47591:1448..1832Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47591 1449..1832 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig47591.11894.1

>prot_H-elongata_contig47591.11894.1 ID=prot_H-elongata_contig47591.11894.1|Name=mRNA_H-elongata_contig47591.11894.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=302bp
MDGQTARGVWQVVERLKGKRVLGTRVVFKRKIDKDGRIEKYKCHLVAKDF
RQVKSIHYEESSSPTSAPTSIRMVLSMIAALGWEARQLDVNMACLEADVE
EEIYVELPEAYRDSRKQVGLLKKAMYGVYGIELEAKGFQRSQADPCVFRW
ILHGIVVVAIVVYVDDLLVTSATKRDEEQAVRDLCSCFPIKDLGEAPYYL
LCHITRDRNAGTLKFDQHQYIQTVAERFGVTKASIVLPTAGGKALSKSDS
PQTDAEVDEMRQIPYREIVGALLWAATMTRPDISFTARQLAKFNDNPGPT
H*
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mRNA from alignment at H-elongata_contig47591:471..1913-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig47591.11894.1 ID=mRNA_H-elongata_contig47591.11894.1|Name=mRNA_H-elongata_contig47591.11894.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1443bp|location=Sequence derived from alignment at H-elongata_contig47591:471..1913- (Himanthalia elongata Himel1 dioecious)
CTAGACCCAGAGTCGGCAACCATTGGCGAGGCACAGGCGTCGTCGGAATG GCCGCAATGGAAAAGGGCGATCGCGCGCGAGATGGATGGGCAAACTGCTC GAGGCGTGTGGCAGGTGGTGGAGCGCCTAAAGGGGAAGAGGGTGTTGGGC ACGAGAGTAGTTTTCAAGCGCAAAATCGATAAGGATGGAAGGATCGAGAA GTATAAATGTCACCTCGTGGCGAAGGATTTCAGGCAGGTCAAAAGCATAC ACTACGAGGAATCCTCCTCTCCGACTTCTGCACCGACCAGCATTAGGATG GTACTCAGCATGATCGCGGCTCTCGGCTGGGAGGCGCGGCAGCTGGACGT CAACATGGCCTGTCTGGAGGCCGATGTGGAGGAGGAGATCTACGTTGAGC TCCCGGAGGCATACCGTGACTCCCGGAAGCAAGTCGGCCTACTAAAGAAG GCAATGTACGGAGTCGTCCACGCTGGGCTGCTGTGATAAACAAAGTACGG GATCGAGCTCGAGGCGAAGGGTTTCCAGAGATCTCAAGCCGACCCATGCG TGTTCCGGTGGATTCTCCACGGGATAGTGGTAGTCGCCATCGTGGTCTAC GTCGACGACCTGCTGGTTACTAGTGCGACGAAACGTGACGAGGAGCAAGC GGTGAGGGACCTGTGCTCCTGTTTCCCTATCAAGGATCTGGGGGAGGCTC CATATTACCTGTTATGCCACATCACGCGGGACCGGAATGCCGGGACACTG AAGTTCGACCAGCATCAGTACATACAGACTGTGGCGGAACGTTTTGGCGT GACGAAGGCCAGCATCGTCCTGCCTACGGCAGGAGGGAAAGCCCTTTCGA AATCAGACAGCCCGCAAACGGACGCAGAGGTTGATGAAATGCGTCAGATT CCCTACCGAGAAATCGTTGGGGCCCTATTGTGGGCAGCGACGATGACCAG GCCCGATATTTCATTCACTGCGCGCCAACTGGCAAAATTCAACGACAACC CGGGACCGACACACTAGATGGAAGCCCAGAAAGTGCTGCAATATTTATGG CGCACTCGGGACCTCGGGATAACCTACGGATGGGAACCGGGGGGGGGGAA GTTATTAGCGTGGGTCGACGCAGACTACGGCACCTTCCCGGACACGCGTC GCTCAGTGTCGGGAGGAGCGGTGATGATGGCTGGCGGGGCCATTAGTTGG TTCTCACGAATGCAAAAGGTAAGGGCAGTGGCGTCGTCCGAATCAGAATA CGTCGCGCTGGCTTAAATGGTAAACGAGTTGCGTTTTCTACGACAGGTCA AGGAGTTCATGACCTTTCCAATCGACGCCGCCATCAAGATACATGAGGAC AACGAAGGCACAATCAAGATGGCGAAAAACCGCTTCAGCAGTCGACGAAC GAGGCACGTGGACATCAAGTATCACATTGTCCGCGACGCGATC
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Coding sequence (CDS) from alignment at H-elongata_contig47591:471..1913-

>mRNA_H-elongata_contig47591.11894.1 ID=mRNA_H-elongata_contig47591.11894.1|Name=mRNA_H-elongata_contig47591.11894.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1812bp|location=Sequence derived from alignment at H-elongata_contig47591:471..1913- (Himanthalia elongata Himel1 dioecious)
ATGGATGGGCAAACTGCTCGAGGCGTGTGGCAGGTGGTGGAGCGCCTAAA
GGGGAAGAGGGTGTTGGGCACGAGAGTAGTTTTCAAGCGCAAAATCGATA
AGGATGGAAGGATCGAGAAGTATAAATGTCACCTCGTGGCGAAGGATTTC
AGGCAGGTCAAAAGCATACACTACGAGGAATCCTCCTCTCCGACTTCTGC
ACCGACCAGCATTAGGATGGTACTCAGCATGATCGCGGCTCTCGGCTGGG
AGGCGCGGCAGCTGGACGTCAACATGGCCTGTCTGGAGGCCGATGTGGAG
GAGGAGATCTACGTTGAGCTCCCGGAGGCATACCGTGACTCCCGGAAGCA
AGTCGGCCTACTAAAGAAGGCAATGTACGGAGTCATGGATGGGCAAACTG
CTCGAGGCGTGTGGCAGGTGGTGGAGCGCCTAAAGGGGAAGAGGGTGTTG
GGCACGAGAGTAGTTTTCAAGCGCAAAATCGATAAGGATGGAAGGATCGA
GAAGTATAAATGTCACCTCGTGGCGAAGGATTTCAGGCAGGTCAAAAGCA
TACACTACGAGGAATCCTCCTCTCCGACTTCTGCACCGACCAGCATTAGG
ATGGTACTCAGCATGATCGCGGCTCTCGGCTGGGAGGCGCGGCAGCTGGA
CGTCAACATGGCCTGTCTGGAGGCCGATGTGGAGGAGGAGATCTACGTTG
AGCTCCCGGAGGCATACCGTGACTCCCGGAAGCAAGTCGGCCTACTAAAG
AAGGCAATGTACGGAGTCTACGGGATCGAGCTCGAGGCGAAGGGTTTCCA
GAGATCTCAAGCCGACCCATGCGTGTTCCGGTGGATTCTCCACGGGATAG
TGGTAGTCGCCATCGTGGTCTACGTCGACGACCTGCTGGTTACTAGTGCG
ACGAAACGTGACGAGGAGCAAGCGGTGAGGGACCTGTGCTCCTGTTTCCC
TATCAAGGATCTGGGGGAGGCTCCATATTACCTGTTATGCCACATCACGC
GGGACCGGAATGCCGGGACACTGAAGTTCGACCAGCATCAGTACATACAG
ACTGTGGCGGAACGTTTTGGCGTGACGAAGGCCAGCATCGTCCTGCCTAC
GGCAGGAGGGAAAGCCCTTTCGAAATCAGACAGCCCGCAAACGGACGCAG
AGGTTGATGAAATGCGTCAGATTCCCTACCGAGAAATCGTTGGGGCCCTA
TTGTGGGCAGCGACGATGACCAGGCCCGATATTTCATTCACTGCGCGCCA
ACTGGCAAAATTCAACGACAACCCGGGACCGACACACTAGTACGGGATCG
AGCTCGAGGCGAAGGGTTTCCAGAGATCTCAAGCCGACCCATGCGTGTTC
CGGTGGATTCTCCACGGGATAGTGGTAGTCGCCATCGTGGTCTACGTCGA
CGACCTGCTGGTTACTAGTGCGACGAAACGTGACGAGGAGCAAGCGGTGA
GGGACCTGTGCTCCTGTTTCCCTATCAAGGATCTGGGGGAGGCTCCATAT
TACCTGTTATGCCACATCACGCGGGACCGGAATGCCGGGACACTGAAGTT
CGACCAGCATCAGTACATACAGACTGTGGCGGAACGTTTTGGCGTGACGA
AGGCCAGCATCGTCCTGCCTACGGCAGGAGGGAAAGCCCTTTCGAAATCA
GACAGCCCGCAAACGGACGCAGAGGTTGATGAAATGCGTCAGATTCCCTA
CCGAGAAATCGTTGGGGCCCTATTGTGGGCAGCGACGATGACCAGGCCCG
ATATTTCATTCACTGCGCGCCAACTGGCAAAATTCAACGACAACCCGGGA
CCGACACACTAG
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