mRNA_H-elongata_contig4759.11893.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig4759.11893.1
Unique NamemRNA_H-elongata_contig4759.11893.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig4759.11893.1 vs. uniprot
Match: D7G3E1_ECTSI (Similar to camp and camp-inhibited cgmp 3,5-cyclic phosphodiesterase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E1_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 5.140e-38
Identity = 96/181 (53.04%), Postives = 119/181 (65.75%), Query Frame = 1 
Query:   28 MFLRGCREPLEQYSECLMKNLKDWKGSRGVQRAKLSAVKMHQLSQMNIANFDHQKMIMARIRELPDIPSMTKYGLREVDSCKVEAAVHVKPQSRRQGSICSFSQDSESYGGQSHESSSTGEKPQNSCGRAAVPILCANQGPRGSRAGGGRRRSIQHGDGGKKGRWRASQAGERNWDAINKA 570
            MFLRGCREPLEQY ECLMKNLKDW G RG+ R KLSAVK+HQL QMNI  FDHQK+IM RIR L DIPSM +Y + + +  +VEAAVHV P  RR+GS  +    +      S +S S+G   +N+    A       +G + S+ G  RRRS +HG G K GR R S A ++ W+AINK+
Sbjct:    1 MFLRGCREPLEQYRECLMKNLKDWHG-RGLVRQKLSAVKIHQLGQMNITRFDHQKLIMDRIRHLSDIPSMARYSVGKANVAEVEAAVHVAP--RRKGSSSNTGSSNNVNRVLSGDSVSSGSLAENASQSDASMSEDTGEGGKKSK-GHHRRRSTRHGLGVKGGR-RGSLAIDKTWEAINKS 176
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BLAST of mRNA_H-elongata_contig4759.11893.1 vs. uniprot
Match: A0A835ZCA7_9STRA (SAM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCA7_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 5.040e-12
Identity = 42/80 (52.50%), Postives = 53/80 (66.25%), Query Frame = 1 
Query:    1 METDVVDVRMFLRGCREPLEQYSECLMKNLKDWKGS-RGVQRAKLSAVKMHQLSQMNIANFDHQKMIMARIRELPDIPSM 237
            M  D++DVR FL+     LEQY EC M NL  W G  RG+ R KL+ V+MH L  MNI   DHQK+IMAR++EL  IP++
Sbjct:    1 MSDDLIDVRTFLKPTG--LEQYRECFMTNL--WGGDGRGLSRRKLAQVQMHHLPDMNITRHDHQKIIMARLKELDRIPAV 76
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BLAST of mRNA_H-elongata_contig4759.11893.1 vs. uniprot
Match: A0A6H5JUX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX4_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 9.410e-11
Identity = 29/42 (69.05%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:    7 TDVVDVRMFLRGCREPLEQYSECLMKNLKDWKGSRGVQRAKL 132
            TD+VD  MFLRGCREP+EQY ECLMKNLKDW G    +R  L
Sbjct:    7 TDLVDAGMFLRGCREPMEQYRECLMKNLKDWHGRLDTKRTTL 48
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig4759.11893.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G3E1_ECTSI5.140e-3853.04Similar to camp and camp-inhibited cgmp 3,5-cyclic... [more]
A0A835ZCA7_9STRA5.040e-1252.50SAM domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A6H5JUX4_9PHAE9.410e-1169.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig4759contigH-elongata_contig4759:8967..10578 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score151.0
Seed ortholog evalue5.7e-34
Seed eggNOG ortholog2880.D7G3E1
KEGG rclassRC00296
KEGG koko:K13293
KEGG ReactionR00191
KEGG Pathwayko00230,ko04024,ko05032,map00230,map04024,map05032
EggNOG free text desc.3',5'-cyclic-nucleotide phosphodiesterase activity
EggNOG OGsKOG3689@1,KOG3689@2759
EC3.1.4.53
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons4
Model size574
Cds size573
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig4759.11893.1prot_H-elongata_contig4759.11893.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig4759 8967..10578 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930786.601155-CDS-H-elongata_contig4759:8966..91451622930786.601155-CDS-H-elongata_contig4759:8966..9145Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4759 8967..9145 -
1691679569.798877-CDS-H-elongata_contig4759:8966..91451691679569.798877-CDS-H-elongata_contig4759:8966..9145Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4759 8967..9145 -
1622930786.6143696-CDS-H-elongata_contig4759:9591..97931622930786.6143696-CDS-H-elongata_contig4759:9591..9793Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4759 9592..9793 -
1691679569.8089645-CDS-H-elongata_contig4759:9591..97931691679569.8089645-CDS-H-elongata_contig4759:9591..9793Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4759 9592..9793 -
1622930786.626535-CDS-H-elongata_contig4759:10009..100941622930786.626535-CDS-H-elongata_contig4759:10009..10094Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4759 10010..10094 -
1691679569.8171-CDS-H-elongata_contig4759:10009..100941691679569.8171-CDS-H-elongata_contig4759:10009..10094Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4759 10010..10094 -
1622930786.63846-CDS-H-elongata_contig4759:10471..105781622930786.63846-CDS-H-elongata_contig4759:10471..10578Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4759 10472..10578 -
1691679569.8259988-CDS-H-elongata_contig4759:10471..105781691679569.8259988-CDS-H-elongata_contig4759:10471..10578Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4759 10472..10578 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig4759.11893.1

>prot_H-elongata_contig4759.11893.1 ID=prot_H-elongata_contig4759.11893.1|Name=mRNA_H-elongata_contig4759.11893.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=191bp
METDVVDVRMFLRGCREPLEQYSECLMKNLKDWKGSRGVQRAKLSAVKMH
QLSQMNIANFDHQKMIMARIRELPDIPSMTKYGLREVDSCKVEAAVHVKP
QSRRQGSICSFSQDSESYGGQSHESSSTGEKPQNSCGRAAVPILCANQGP
RGSRAGGGRRRSIQHGDGGKKGRWRASQAGERNWDAINKAG
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mRNA from alignment at H-elongata_contig4759:8967..10578-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig4759.11893.1 ID=mRNA_H-elongata_contig4759.11893.1|Name=mRNA_H-elongata_contig4759.11893.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1612bp|location=Sequence derived from alignment at H-elongata_contig4759:8967..10578- (Himanthalia elongata Himel1 dioecious)
ATGGAGACGGATGTGGTCGACGTCAGGATGTTCCTGAGGGGCTGCAGGGA
GCCCCTTGAGCAATACAGCGAATGTCTGATGAAGAATTTAAAAGACTGGA
AGGGCAGGTGCGGTTGTAAATCGAAAGCGCGAAAGATCGACAAAGATTAA
AGATTTCGTTTTTCTTCTTTTTGCCCAGGAATATTCCGCCTCTGTTCCGA
AGAATGTCACGACCCATCAAAGCTGGGATTCTGGCTTGCTGTTTGTGACG
TTTTATGTCTTCGCCATGAATGGTTGATGATGCCAATGACATCGAAATCA
CATACCGGTAGCATTCAAACACCTCACCCAACCAAACTAGGCTTTATCGT
ATAACCTATTTTTGCGCTGTTCGTCTATAGCTGTCTCGCCGTCTGGTCCA
AACACCGAACGTATGTGCCGCACGCAACCACCCCGTTGTTGTGCGATGTC
AATGATATTATTTTCCAAATGATGGCGCTCCGAGTAGGGGTGTACAGCGG
GCCAAGCTCTCCGCGGTGAAGATGCACCAGCTGAGTCAGATGAACATAGC
CAACTTCGACCACCAGAAGGTGTACCGTGACCTTATTCCCCGATAGTAAG
ATGTGTCTAATAAGTCGCCTGCTTATCTCTGCCGCGGCGGTAGCTTATTA
GGACACGAGTAATAATAATTTAAAAAATGTTCTGGAATCCTGTTGCTGCT
TGCGCGTCGTGTGTGACCATGGGCGCTTCAACATGCGCGTTCGATCGATA
TCCTCCTGCCTTTACCATTATTACGTTGCCCTCAGATGATTATGGCAAGA
ATTCGCGAGCTGCCCGATATTCCGAGTATGACGAAGTACGGCCTTAGGGA
AGTGGATTCTTGTAAAGTGGAAGCAGCTGTCCACGTCAAGCCCCAGTCGC
GACGACAAGGATCAATATGCAGCTTTTCCCAGGATAGCGAAAGTTATGGT
GGACAATCTCATGAGTCTTCTAGCACGGGTGAGAAGCGTACGCTTACATG
TTTCCTTTCCTTGTATCTGCTAGAGAAATACCCCACCCGAATGGTTGTCA
ATAGTAGCAACGACCTTGCCCTGGCGTCATCGGGAAGCCCTTTTATCTTG
CCATATTTGTCAGCCACGGCTCTTTATTTCGGGATCCGAAGAGTTCGTCG
TCGTGTCGTCGCCCGAGTAGATATATCTTCTTAGCGAATGAGAGGAGTTT
CTGTTCTCTTGAGAAGTAGTCGTATAATGAGCATCGATGTTTCTCGACAT
CCTGTCGCGATGTAATACGTACTGTAGCGTCTAGGCGGGAGAGCGGGCGC
GCGAGTTCAAAGCAAGCGCCCGGAGAAGCTCCCCGACCGAGTATTCCTAC
ACGCGAAATGCCGCCAGCGCTGGTACAATTTCATTTCATCCTGCTTGTCT
AGGATTTCCTACAAACATGCCACAAAAAAACAGCTCAGAACAGCTGTGGC
CGGGCCGCTGTACCCATTTTATGCGCAAATCAAGGTCCGAGGGGAAGCAG
AGCCGGTGGCGGGCGACGACGATCGATTCAACACGGGGACGGGGGTAAAA
AGGGGAGATGGAGGGCCAGCCAGGCCGGAGAAAGGAATTGGGACGCCATC
AACAAGGCAGGA
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Coding sequence (CDS) from alignment at H-elongata_contig4759:8967..10578-

>mRNA_H-elongata_contig4759.11893.1 ID=mRNA_H-elongata_contig4759.11893.1|Name=mRNA_H-elongata_contig4759.11893.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1146bp|location=Sequence derived from alignment at H-elongata_contig4759:8967..10578- (Himanthalia elongata Himel1 dioecious)
ATGGAGACGGATGTGGTCGACGTCAGGATGTTCCTGAGGGGCTGCAGGGA
GCCCCTTGAGCAATACAGCGAATGTCTGATGAAGAATTTAAAAGACTGGA
AGGGCAGATGGAGACGGATGTGGTCGACGTCAGGATGTTCCTGAGGGGCT
GCAGGGAGCCCCTTGAGCAATACAGCGAATGTCTGATGAAGAATTTAAAA
GACTGGAAGGGCAGTAGGGGTGTACAGCGGGCCAAGCTCTCCGCGGTGAA
GATGCACCAGCTGAGTCAGATGAACATAGCCAACTTCGACCACCAGAAGT
AGGGGTGTACAGCGGGCCAAGCTCTCCGCGGTGAAGATGCACCAGCTGAG
TCAGATGAACATAGCCAACTTCGACCACCAGAAGATGATTATGGCAAGAA
TTCGCGAGCTGCCCGATATTCCGAGTATGACGAAGTACGGCCTTAGGGAA
GTGGATTCTTGTAAAGTGGAAGCAGCTGTCCACGTCAAGCCCCAGTCGCG
ACGACAAGGATCAATATGCAGCTTTTCCCAGGATAGCGAAAGTTATGGTG
GACAATCTCATGAGTCTTCTAGCACGGGTGAGAAGCATGATTATGGCAAG
AATTCGCGAGCTGCCCGATATTCCGAGTATGACGAAGTACGGCCTTAGGG
AAGTGGATTCTTGTAAAGTGGAAGCAGCTGTCCACGTCAAGCCCCAGTCG
CGACGACAAGGATCAATATGCAGCTTTTCCCAGGATAGCGAAAGTTATGG
TGGACAATCTCATGAGTCTTCTAGCACGGGTGAGAAGCCTCAGAACAGCT
GTGGCCGGGCCGCTGTACCCATTTTATGCGCAAATCAAGGTCCGAGGGGA
AGCAGAGCCGGTGGCGGGCGACGACGATCGATTCAACACGGGGACGGGGG
TAAAAAGGGGAGATGGAGGGCCAGCCAGGCCGGAGAAAGGAATTGGGACG
CCATCAACAAGGCAGGACTCAGAACAGCTGTGGCCGGGCCGCTGTACCCA
TTTTATGCGCAAATCAAGGTCCGAGGGGAAGCAGAGCCGGTGGCGGGCGA
CGACGATCGATTCAACACGGGGACGGGGGTAAAAAGGGGAGATGGAGGGC
CAGCCAGGCCGGAGAAAGGAATTGGGACGCCATCAACAAGGCAGGA
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