mRNA_H-elongata_contig4759.11890.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig4759.11890.1
Unique NamemRNA_H-elongata_contig4759.11890.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig4759.11890.1 vs. uniprot
Match: D7G0P9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0P9_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 1.050e-23
Identity = 49/60 (81.67%), Postives = 53/60 (88.33%), Query Frame = 3 
Query:   15 ETGRNLQENFVSIWLTDWKVWPAANLVMFRLIPSSYRPSFASVVSVAWQTYMSSVSYNSP 194
            ET +NL E F SIWLTDWKVWPAANLVMFR IPSSYRPSFAS+V VAWQ Y+SSVSY+SP
Sbjct:  150 ETKKNLGETFWSIWLTDWKVWPAANLVMFRFIPSSYRPSFASMVQVAWQAYLSSVSYDSP 209
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BLAST of mRNA_H-elongata_contig4759.11890.1 vs. uniprot
Match: A0A6A6GRB8_9PEZI (Uncharacterized protein n=2 Tax=Elsinoe TaxID=40996 RepID=A0A6A6GRB8_9PEZI)

HSP 1 Score: 55.5 bits (132), Expect = 2.740e-6
Identity = 21/54 (38.89%), Postives = 32/54 (59.26%), Query Frame = 3 
Query:   12 RETGRNLQENFVSIWLTDWKVWPAANLVMFRLIPSSYRPSFASVVSVAWQTYMS 173
            +ET R +++   + W   W+VWPA     F  I   YR +FA V+++ WQTY+S
Sbjct:  131 QETMRRIKDTVPTSWKMSWRVWPAVTAFSFTFIKEQYRSTFAGVIAIGWQTYLS 184
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BLAST of mRNA_H-elongata_contig4759.11890.1 vs. uniprot
Match: A0A2P7ZDG5_9PEZI (Protein sym1 n=2 Tax=Elsinoe australis TaxID=40998 RepID=A0A2P7ZDG5_9PEZI)

HSP 1 Score: 55.8 bits (133), Expect = 2.940e-6
Identity = 28/82 (34.15%), Postives = 41/82 (50.00%), Query Frame = 3 
Query:   15 ETGRNLQENFVSIWLTDWKVWPAANLVMFRLIPSSYRPSFASVVSVAWQTYMSSVSYNSPQHSTAVTRSEGEPMSVRGGAGK 260
            ET R +++   + W   W+VWPA     F  I   YR +FA V+++ WQTY+S ++       +   R E      RGGA K
Sbjct:  179 ETKRRIKDTVPTSWKMSWRVWPAVTAFSFTFIKEQYRSTFAGVIAIGWQTYLSWLN-------SRAARMEKAEDQTRGGARK 253
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BLAST of mRNA_H-elongata_contig4759.11890.1 vs. uniprot
Match: A0A2K1QLQ1_9PEZI (Protein sym1 n=1 Tax=Sphaceloma murrayae TaxID=2082308 RepID=A0A2K1QLQ1_9PEZI)

HSP 1 Score: 55.5 bits (132), Expect = 4.210e-6
Identity = 20/54 (37.04%), Postives = 32/54 (59.26%), Query Frame = 3 
Query:   12 RETGRNLQENFVSIWLTDWKVWPAANLVMFRLIPSSYRPSFASVVSVAWQTYMS 173
            +ET R +++   + W   W+VWPA     F  +   YR +FA V+++ WQTY+S
Sbjct:  180 QETKRRIKDTVPTSWKMSWRVWPAVTAFSFTFVKEQYRSTFAGVIAIGWQTYLS 233
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BLAST of mRNA_H-elongata_contig4759.11890.1 vs. uniprot
Match: G3W871_SARHA (MPV17 mitochondrial inner membrane protein like 2 n=2 Tax=Sarcophilus harrisii TaxID=9305 RepID=G3W871_SARHA)

HSP 1 Score: 52.8 bits (125), Expect = 2.490e-5
Identity = 21/50 (42.00%), Postives = 32/50 (64.00%), Query Frame = 3 
Query:   24 RNLQENFVSIWLTDWKVWPAANLVMFRLIPSSYRPSFASVVSVAWQTYMS 173
            + LQ+ F   +  DW VWPAA LV F  +P+SYR  + + +++ W TY+S
Sbjct:  139 QELQDKFWEFYKADWCVWPAAQLVNFLYVPTSYRVMYVNSMTLGWDTYLS 188
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BLAST of mRNA_H-elongata_contig4759.11890.1 vs. uniprot
Match: A0A067P2B3_PLEOS (Uncharacterized protein n=2 Tax=Pleurotus ostreatus TaxID=5322 RepID=A0A067P2B3_PLEOS)

HSP 1 Score: 52.8 bits (125), Expect = 2.490e-5
Identity = 29/64 (45.31%), Postives = 36/64 (56.25%), Query Frame = 3 
Query:    3 TMARETGRN---LQENFVSIW----LTDWKVWPAANLVMFRLIPSSYRPSFASVVSVAWQTYMS 173
            TM    GRN   +Q+ +  I+    LT+WKVWPAA LV FR +P  YR  F S   V W  Y+S
Sbjct:  123 TMGIMEGRNRRQIQQKYSDIYVPALLTNWKVWPAAQLVNFRYMPLPYRIPFQSTCGVFWTLYLS 186
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BLAST of mRNA_H-elongata_contig4759.11890.1 vs. uniprot
Match: A0DXW8_PARTE (Uncharacterized protein n=1 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0DXW8_PARTE)

HSP 1 Score: 52.4 bits (124), Expect = 2.770e-5
Identity = 20/53 (37.74%), Postives = 34/53 (64.15%), Query Frame = 3 
Query:   30 LQENFVSIWLTDWKVWPAANLVMFRLIPSSYRPSFASVVSVAWQTYMSSVSYN 188
            ++ NFV   +T+W++WPAA ++ F LIP  Y+  + + V   W  Y+S +S+N
Sbjct:  135 IKNNFVKAMITNWQIWPAAQIINFWLIPRHYQVLWVNFVGFFWNIYLSYISHN 187
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BLAST of mRNA_H-elongata_contig4759.11890.1 vs. uniprot
Match: UPI001EAFBA06 (protein Mpv17-like n=2 Tax=Haliotis rufescens TaxID=6454 RepID=UPI001EAFBA06)

HSP 1 Score: 52.0 bits (123), Expect = 3.340e-5
Identity = 20/49 (40.82%), Postives = 36/49 (73.47%), Query Frame = 3 
Query:   24 RNLQENFVSIWLTDWKVWPAANLVMFRLIPSSYRPSFASVVSVAWQTYM 170
            + +++++++I +T++KVWPAA L+ F LIP  +R  F + V++ W TYM
Sbjct:  121 QKVKQDYLTILMTNYKVWPAAQLINFYLIPLQHRVLFVNFVALGWNTYM 169
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BLAST of mRNA_H-elongata_contig4759.11890.1 vs. uniprot
Match: A0A834I1H3_RHYFE (Uncharacterized protein n=1 Tax=Rhynchophorus ferrugineus TaxID=354439 RepID=A0A834I1H3_RHYFE)

HSP 1 Score: 51.6 bits (122), Expect = 4.620e-5
Identity = 21/47 (44.68%), Postives = 30/47 (63.83%), Query Frame = 3 
Query:   33 QENFVSIWLTDWKVWPAANLVMFRLIPSSYRPSFASVVSVAWQTYMS 173
            +  ++ I LT+WKVWPA  +V F +IP  Y+  F   V+V W TY+S
Sbjct:  125 KNTYMDILLTNWKVWPAVQMVNFYVIPLQYQVLFVQAVAVFWNTYLS 171
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BLAST of mRNA_H-elongata_contig4759.11890.1 vs. uniprot
Match: UPI001EE599B1 (protein Mpv17-like n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE599B1)

HSP 1 Score: 51.6 bits (122), Expect = 4.620e-5
Identity = 18/49 (36.73%), Postives = 36/49 (73.47%), Query Frame = 3 
Query:   24 RNLQENFVSIWLTDWKVWPAANLVMFRLIPSSYRPSFASVVSVAWQTYM 170
            + +++++++I +T++KVWPAA L+ F L+P  +R  F + +++ W TYM
Sbjct:  121 KKVKQDYITILVTNYKVWPAAQLINFFLVPLQHRVLFVNFIALGWNTYM 169
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig4759.11890.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D7G0P9_ECTSI1.050e-2381.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6A6GRB8_9PEZI2.740e-638.89Uncharacterized protein n=2 Tax=Elsinoe TaxID=4099... [more]
A0A2P7ZDG5_9PEZI2.940e-634.15Protein sym1 n=2 Tax=Elsinoe australis TaxID=40998... [more]
A0A2K1QLQ1_9PEZI4.210e-637.04Protein sym1 n=1 Tax=Sphaceloma murrayae TaxID=208... [more]
G3W871_SARHA2.490e-542.00MPV17 mitochondrial inner membrane protein like 2 ... [more]
A0A067P2B3_PLEOS2.490e-545.31Uncharacterized protein n=2 Tax=Pleurotus ostreatu... [more]
A0DXW8_PARTE2.770e-537.74Uncharacterized protein n=1 Tax=Paramecium tetraur... [more]
UPI001EAFBA063.340e-540.82protein Mpv17-like n=2 Tax=Haliotis rufescens TaxI... [more]
A0A834I1H3_RHYFE4.620e-544.68Uncharacterized protein n=1 Tax=Rhynchophorus ferr... [more]
UPI001EE599B14.620e-536.73protein Mpv17-like n=1 Tax=Haliotis rubra TaxID=36... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig4759contigH-elongata_contig4759:1573..2469 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score106.3
Seed ortholog evalue1.3e-20
Seed eggNOG ortholog2880.D7G0P9
Preferred nameSYM1
KEGG koko:K03259,ko:K13348,ko:K13349
KEGG Pathwayko01521,ko03013,ko04066,ko04146,ko04150,ko04151,ko04211,ko04910,map01521,map03013,map04066,map04146,map04150,map04151,map04211,map04910
KEGG ModuleM00428
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006066,GO:0006067,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016021,GO:0016999,GO:0017144,GO:0019866,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0034308,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901615
EggNOG free text desc.Belongs to the peroxisomal membrane protein PXMP2 4 family
EggNOG OGsKOG1944@1,KOG1944@2759
Ec32 ortholog descriptionMpv17/PMP22
Ec32 orthologEc-09_001220.1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03012,ko03019
Hectar predicted targeting categoryother localisation
Exons2
Model size499
Cds size468
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig4759.11890.1prot_H-elongata_contig4759.11890.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig4759 1578..2443 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930786.3197174-UTR-H-elongata_contig4759:1572..15771622930786.3197174-UTR-H-elongata_contig4759:1572..1577Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4759 1573..1577 +
1691679569.6279867-UTR-H-elongata_contig4759:1572..15771691679569.6279867-UTR-H-elongata_contig4759:1572..1577Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4759 1573..1577 +
1622930786.3697631-UTR-H-elongata_contig4759:2443..24691622930786.3697631-UTR-H-elongata_contig4759:2443..2469Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4759 2444..2469 +
1691679569.6621213-UTR-H-elongata_contig4759:2443..24691691679569.6621213-UTR-H-elongata_contig4759:2443..2469Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4759 2444..2469 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930786.3362875-CDS-H-elongata_contig4759:1577..16751622930786.3362875-CDS-H-elongata_contig4759:1577..1675Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4759 1578..1675 +
1691679569.641223-CDS-H-elongata_contig4759:1577..16751691679569.641223-CDS-H-elongata_contig4759:1577..1675Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4759 1578..1675 +
1622930786.3563087-CDS-H-elongata_contig4759:2073..24431622930786.3563087-CDS-H-elongata_contig4759:2073..2443Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4759 2074..2443 +
1691679569.651928-CDS-H-elongata_contig4759:2073..24431691679569.651928-CDS-H-elongata_contig4759:2073..2443Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4759 2074..2443 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig4759.11890.1

>prot_H-elongata_contig4759.11890.1 ID=prot_H-elongata_contig4759.11890.1|Name=mRNA_H-elongata_contig4759.11890.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=156bp
MARETGRNLQENFVSIWLTDWKVWPAANLVMFRLIPSSYRPSFASVVSVA
WQTYMSSVSYNSPQHSTAVTRSEGEPMSVRGGAGKDRRRDLLGVKSQTGV
HTIQHQRVTMKDRQPTGRCSMETTRGCIRGDEQTSPKATSLEGEERAPQS
NSKKL*
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mRNA from alignment at H-elongata_contig4759:1573..2469+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig4759.11890.1 ID=mRNA_H-elongata_contig4759.11890.1|Name=mRNA_H-elongata_contig4759.11890.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=897bp|location=Sequence derived from alignment at H-elongata_contig4759:1573..2469+ (Himanthalia elongata Himel1 dioecious)
GTACGATGGCGAGGGAGACGGGAAGGAATCTACAAGAAAACTTTGTGTCG
ATTTGGCTCACGGACTGGAAGGTCTGGCCCGCTGCCAACCTCGTCATGTT
CAGGCGAGACTCAGATCGCGTTGTTTTACCATCAACCCGCAACGTGCGCG
GTAACGGCTTAAAACTGGCGGAAGCGAGTTATCCCGAGTAGCTTGACTTG
AGAGCATGTTTATCGCTGAGGTCTCCAAGCGCCGCCCCGACCGACGAGGT
GGAAGAACCAGCGATTGATTATGTATTACCTGGCCTCGAGTGTAGTCTGC
TGCAGTATCGTGTAAGAGAGCAGATATCTTCGGAGGGGCAACCCAATACG
ACGATATAGACCGCTTTTGAGTGCAGAGGGCCAAAATCGCGCCAGTGTTA
AGCGTTTCGCCTGTACAATGGGCGAAAAAACAAACAATGATGTAGCTTTT
CTGGTGCATCATAGACCCCCCGTTTTTTATTTTGTCTTCGCCTCGCTCCA
GGTTGATCCCCTCGTCGTACCGACCGTCTTTCGCGAGCGTCGTATCAGTG
GCGTGGCAGACGTACATGTCCAGCGTGAGCTACAACAGTCCGCAGCACTC
CACAGCCGTGACCCGCTCGGAAGGTGAACCCATGTCGGTCAGGGGAGGCG
CTGGGAAGGATCGAAGAAGAGATCTGCTCGGGGTGAAGTCCCAAACCGGG
GTCCACACGATTCAGCATCAGCGGGTAACAATGAAAGACCGGCAACCTAC
CGGACGATGCTCTATGGAAACCACGCGAGGGTGTATTCGTGGGGATGAGC
AAACATCTCCCAAAGCGACTTCGTTGGAGGGGGAAGAACGAGCTCCACAG
TCAAACTCGAAGAAGTTGTAGCGATACCGTCTTAGTGTGGGGAAGGG
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Coding sequence (CDS) from alignment at H-elongata_contig4759:1573..2469+

>mRNA_H-elongata_contig4759.11890.1 ID=mRNA_H-elongata_contig4759.11890.1|Name=mRNA_H-elongata_contig4759.11890.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=936bp|location=Sequence derived from alignment at H-elongata_contig4759:1573..2469+ (Himanthalia elongata Himel1 dioecious)
ATGGCGAGGGAGACGGGAAGGAATCTACAAGAAAACTTTGTGTCGATTTG
GCTCACGGACTGGAAGGTCTGGCCCGCTGCCAACCTCGTCATGTTCAGAT
GGCGAGGGAGACGGGAAGGAATCTACAAGAAAACTTTGTGTCGATTTGGC
TCACGGACTGGAAGGTCTGGCCCGCTGCCAACCTCGTCATGTTCAGGTTG
ATCCCCTCGTCGTACCGACCGTCTTTCGCGAGCGTCGTATCAGTGGCGTG
GCAGACGTACATGTCCAGCGTGAGCTACAACAGTCCGCAGCACTCCACAG
CCGTGACCCGCTCGGAAGGTGAACCCATGTCGGTCAGGGGAGGCGCTGGG
AAGGATCGAAGAAGAGATCTGCTCGGGGTGAAGTCCCAAACCGGGGTCCA
CACGATTCAGCATCAGCGGGTAACAATGAAAGACCGGCAACCTACCGGAC
GATGCTCTATGGAAACCACGCGAGGGTGTATTCGTGGGGATGAGCAAACA
TCTCCCAAAGCGACTTCGTTGGAGGGGGAAGAACGAGCTCCACAGTCAAA
CTCGAAGAAGTTGTAGGTTGATCCCCTCGTCGTACCGACCGTCTTTCGCG
AGCGTCGTATCAGTGGCGTGGCAGACGTACATGTCCAGCGTGAGCTACAA
CAGTCCGCAGCACTCCACAGCCGTGACCCGCTCGGAAGGTGAACCCATGT
CGGTCAGGGGAGGCGCTGGGAAGGATCGAAGAAGAGATCTGCTCGGGGTG
AAGTCCCAAACCGGGGTCCACACGATTCAGCATCAGCGGGTAACAATGAA
AGACCGGCAACCTACCGGACGATGCTCTATGGAAACCACGCGAGGGTGTA
TTCGTGGGGATGAGCAAACATCTCCCAAAGCGACTTCGTTGGAGGGGGAA
GAACGAGCTCCACAGTCAAACTCGAAGAAGTTGTAG
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