mRNA_H-elongata_contig47540.11884.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig47540.11884.1
Unique NamemRNA_H-elongata_contig47540.11884.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig47540.11884.1 vs. uniprot
Match: D7FPQ8_ECTSI (Kinesin K39 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPQ8_ECTSI)

HSP 1 Score: 152 bits (383), Expect = 9.990e-39
Identity = 94/133 (70.68%), Postives = 110/133 (82.71%), Query Frame = 1 
Query:   67 SPSVETEELQAHAEAMELELRYTLESFEGQLSAMAREKVAIQKQVKELTGQNTTLRKQVSHYKKLAKESEGHMEQNEVSKLRARLAEAENVHTEKDRQLAAKDKEAESAIARARELEWRVQAAESELSSVKET 465
            S S E E+LQAHA+AMELELRYTLESFEGQLSAMAREKVAIQKQVKELTGQ TTLRKQVSHYKK+AKESE   EQ+EV +LRARL EAE++   K ++LAAK +EA SA A A  LE R+Q A+SE+  ++E+
Sbjct:  801 SRSAEAEQLQAHADAMELELRYTLESFEGQLSAMAREKVAIQKQVKELTGQCTTLRKQVSHYKKVAKESEAQGEQDEVIELRARLVEAEDILVVKSQELAAKAQEAVSATALANALEHRIQEADSEVLGLRES 933
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BLAST of mRNA_H-elongata_contig47540.11884.1 vs. uniprot
Match: D7FYN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYN2_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 4.930e-32
Identity = 86/137 (62.77%), Postives = 101/137 (73.72%), Query Frame = 1 
Query:   13 GGHPSGAINTNNIAPCPPSPSVETEELQAHAEAMELELRYTLESFEGQLSAMAREKVAIQKQVKELTGQNTTLRKQVSHYKKLAKESEGHMEQNEVSKLRARLAEAENVHTEKDRQLAAKDKEAESAIARARELEWR 423
            GG    +   N +APC  S   E E+LQAHAEAMELELR+T ESF+ QLSAMAREKVAIQKQVKE+TGQ TTLRKQVSHYKK+AKE E   EQ+EV +LRARL EA+    E  ++LAAK +E +S+ A A  LE R
Sbjct:  732 GGKEQASAIANGVAPC--STGAEAEQLQAHAEAMELELRFTWESFQRQLSAMAREKVAIQKQVKEVTGQCTTLRKQVSHYKKVAKEREA-TEQHEVIELRARLEEAQRTLVEMSQELAAKTQETDSSRALANTLEHR 865
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47540.11884.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FPQ8_ECTSI9.990e-3970.68Kinesin K39 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
D7FYN2_ECTSI4.930e-3262.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig47540contigH-elongata_contig47540:91..1811 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size648
Cds size648
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig47540.11884.1prot_H-elongata_contig47540.11884.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig47540 91..1811 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930785.5442224-CDS-H-elongata_contig47540:90..1921622930785.5442224-CDS-H-elongata_contig47540:90..192Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47540 91..192 +
1691679569.2658718-CDS-H-elongata_contig47540:90..1921691679569.2658718-CDS-H-elongata_contig47540:90..192Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47540 91..192 +
1622930785.5706217-CDS-H-elongata_contig47540:466..6041622930785.5706217-CDS-H-elongata_contig47540:466..604Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47540 467..604 +
1691679569.278914-CDS-H-elongata_contig47540:466..6041691679569.278914-CDS-H-elongata_contig47540:466..604Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47540 467..604 +
1622930785.5852365-CDS-H-elongata_contig47540:792..8431622930785.5852365-CDS-H-elongata_contig47540:792..843Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47540 793..843 +
1691679569.2862945-CDS-H-elongata_contig47540:792..8431691679569.2862945-CDS-H-elongata_contig47540:792..843Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47540 793..843 +
1622930785.5966766-CDS-H-elongata_contig47540:1454..18111622930785.5966766-CDS-H-elongata_contig47540:1454..1811Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47540 1455..1811 +
1691679569.2939663-CDS-H-elongata_contig47540:1454..18111691679569.2939663-CDS-H-elongata_contig47540:1454..1811Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47540 1455..1811 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig47540.11884.1

>prot_H-elongata_contig47540.11884.1 ID=prot_H-elongata_contig47540.11884.1|Name=mRNA_H-elongata_contig47540.11884.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=216bp
MVANGGHPSGAINTNNIAPCPPSPSVETEELQAHAEAMELELRYTLESFE
GQLSAMAREKVAIQKQVKELTGQNTTLRKQVSHYKKLAKESEGHMEQNEV
SKLRARLAEAENVHTEKDRQLAAKDKEAESAIARARELEWRVQAAESELS
SVKETYASTAAEAENVHTEKDRQMAAKDKEAESAIARARELEWRVQAAES
ELSSVKETCASTAAEL
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mRNA from alignment at H-elongata_contig47540:91..1811+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig47540.11884.1 ID=mRNA_H-elongata_contig47540.11884.1|Name=mRNA_H-elongata_contig47540.11884.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1721bp|location=Sequence derived from alignment at H-elongata_contig47540:91..1811+ (Himanthalia elongata Himel1 dioecious)
ATGGTCGCCAATGGTGGACATCCCTCCGGTGCCATTAATACTAATAATAT
TGCACCATGCCCCCCTTCTCCAAGCGTGGAGACAGAAGAACTTCAGGCAC
ATGTGAGTATTGGAGGGGTAGCAGTCAACATGGTACACTTCCCAGTGATT
GAGATGATTGAGGTGATTGAGGTGATAAGAATACGGTGATGACATTTTGT
AAGGTTCGATTAAATAGTATCGGCAAACACGATCCACGTGCGTGTACATA
ATAAGCAGATAAATGGGTACAAAAAACAAGACTTAGTTGTTATAATCATG
GTGTAAAAAGCTGTACGGAAATTTTAACTGTGGTGGTGATCCGTTTTTCT
GTCTGTCCATACCAATGCCGCCACAGGCCGAAGCAATGGAGTTGGAACTA
AGGTACACTCTGGAGTCCTTCGAGGGACAACTGAGCGCTATGGCTCGCGA
GAAAGTTGCAATCCAGAAGCAGGTCAAGGAGCTTACCGGCCAAAACACCA
CATTGCGTAAGCAGGTAACATCTTTAACAGTAATCGAGATATTTATCCTC
GTTACTGTGTCAGTGATATGATGCTACGGCAAAAGAGAGGGGACACCTTT
GTGGCGAGATATAATGGTGGCGGTGTCATTGTATCCCGAGATGATTATTC
CGTCAAGCATTCAAGCACCAAACAGCATCCTTGCTGTTTTTCTTTCTCTT
AGGTGTCCCACTACAAAAAACTGGCCAAAGAAAGCGAGGGACACATGGAG
CAAGTGAGCACCCTACATAAGTTAGTAGTTGTTGCCAGAGGAAAATGTCT
AACTTAGATAAATGCATTATAGTATTTAATAGCGCCTGATGATGCGAGTA
AGACACCGCGGGGACAAAAGTCATCCTCCCCCTCTTCCCTGCATTGTTTA
ATTCAAATCTCAGCTTTTAATATATGTTCTCGCATTTTTTTTGTATGTCT
TAGTGCCTTGTGCGGTATTGATTAAATCGTTATTTTAAGTTATGAAATCG
TCATTTTAAGTTGTTATGAAATCAGTATTAAATATGGCGATATAGCGCCG
ACACCCCTTCCAAGATTATTTTTATTTATGTTTTATTGTGACTTGTGATC
GCAACGGTAGATATTGGAAATATAATCCAATGTGATCCTTCATAAACGAT
ATCAATTTTAAAAAATCGGCTAAGAACGCGCCGCCGCAATATTATTAGGG
TATATCTATTAATTGTATAGTATAGTACAGTATAGTATAGTACAGTATAG
TACAGAAGTGACCTGATCGAGCGTGACGTATCATTTCAAATTCAATGATA
CTTCTTAACTTTAGCGAACTTCAAGACAGTAAAGCTCTTGATCGTCTTTG
CCTTCCGCGGGCAGAACGAGGTGTCGAAGCTACGCGCTCGCCTGGCGGAG
GCAGAAAACGTCCACACAGAGAAAGATCGCCAATTGGCCGCCAAAGATAA
AGAGGCCGAATCAGCCATTGCCCGAGCCCGCGAGCTCGAATGGCGAGTGC
AAGCAGCAGAGTCCGAACTATCGTCTGTAAAAGAGACTTATGCGTCTACG
GCTGCAGAGGCAGAAAACGTCCACACAGAGAAAGATCGCCAAATGGCCGC
CAAAGATAAAGAGGCCGAATCAGCCATTGCCCGAGCCCGCGAGCTCGAAT
GGCGAGTGCAAGCAGCAGAGTCCGAACTATCATCTGTAAAAGAGACTTGT
GCGTCTACGGCTGCAGAGCTT
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Coding sequence (CDS) from alignment at H-elongata_contig47540:91..1811+

>mRNA_H-elongata_contig47540.11884.1 ID=mRNA_H-elongata_contig47540.11884.1|Name=mRNA_H-elongata_contig47540.11884.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1296bp|location=Sequence derived from alignment at H-elongata_contig47540:91..1811+ (Himanthalia elongata Himel1 dioecious)
ATGGTCGCCAATGGTGGACATCCCTCCGGTGCCATTAATACTAATAATAT
TGCACCATGCCCCCCTTCTCCAAGCGTGGAGACAGAAGAACTTCAGGCAC
ATATGGTCGCCAATGGTGGACATCCCTCCGGTGCCATTAATACTAATAAT
ATTGCACCATGCCCCCCTTCTCCAAGCGTGGAGACAGAAGAACTTCAGGC
ACATGCCGAAGCAATGGAGTTGGAACTAAGGTACACTCTGGAGTCCTTCG
AGGGACAACTGAGCGCTATGGCTCGCGAGAAAGTTGCAATCCAGAAGCAG
GTCAAGGAGCTTACCGGCCAAAACACCACATTGCGTAAGCAGGCCGAAGC
AATGGAGTTGGAACTAAGGTACACTCTGGAGTCCTTCGAGGGACAACTGA
GCGCTATGGCTCGCGAGAAAGTTGCAATCCAGAAGCAGGTCAAGGAGCTT
ACCGGCCAAAACACCACATTGCGTAAGCAGGTGTCCCACTACAAAAAACT
GGCCAAAGAAAGCGAGGGACACATGGAGCAAGTGTCCCACTACAAAAAAC
TGGCCAAAGAAAGCGAGGGACACATGGAGCAAAACGAGGTGTCGAAGCTA
CGCGCTCGCCTGGCGGAGGCAGAAAACGTCCACACAGAGAAAGATCGCCA
ATTGGCCGCCAAAGATAAAGAGGCCGAATCAGCCATTGCCCGAGCCCGCG
AGCTCGAATGGCGAGTGCAAGCAGCAGAGTCCGAACTATCGTCTGTAAAA
GAGACTTATGCGTCTACGGCTGCAGAGGCAGAAAACGTCCACACAGAGAA
AGATCGCCAAATGGCCGCCAAAGATAAAGAGGCCGAATCAGCCATTGCCC
GAGCCCGCGAGCTCGAATGGCGAGTGCAAGCAGCAGAGTCCGAACTATCA
TCTGTAAAAGAGACTTGTGCGTCTACGGCTGCAGAGCTTAACGAGGTGTC
GAAGCTACGCGCTCGCCTGGCGGAGGCAGAAAACGTCCACACAGAGAAAG
ATCGCCAATTGGCCGCCAAAGATAAAGAGGCCGAATCAGCCATTGCCCGA
GCCCGCGAGCTCGAATGGCGAGTGCAAGCAGCAGAGTCCGAACTATCGTC
TGTAAAAGAGACTTATGCGTCTACGGCTGCAGAGGCAGAAAACGTCCACA
CAGAGAAAGATCGCCAAATGGCCGCCAAAGATAAAGAGGCCGAATCAGCC
ATTGCCCGAGCCCGCGAGCTCGAATGGCGAGTGCAAGCAGCAGAGTCCGA
ACTATCATCTGTAAAAGAGACTTGTGCGTCTACGGCTGCAGAGCTT
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