mRNA_H-elongata_contig47507.11879.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig47507.11879.1
Unique NamemRNA_H-elongata_contig47507.11879.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig47507.11879.1 vs. uniprot
Match: D8LKF5_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKF5_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 4.860e-14
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:   43 EDYIECESCNEWYHFSCEDLDETDPPDVYSCKRC 144
            EDYIECESCNEWYHFSCE LDE +PP+ YSCKRC
Sbjct:  170 EDYIECESCNEWYHFSCEGLDEDNPPERYSCKRC 203
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47507.11879.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKF5_ECTSI4.860e-1485.29PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig47507contigH-elongata_contig47507:3611..3754 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size144
Cds size144
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930785.1226418-CDS-H-elongata_contig47507:3610..37541622930785.1226418-CDS-H-elongata_contig47507:3610..3754Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47507 3611..3754 +
1691679569.1023655-CDS-H-elongata_contig47507:3610..37541691679569.1023655-CDS-H-elongata_contig47507:3610..3754Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47507 3611..3754 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig47507.11879.1prot_H-elongata_contig47507.11879.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig47507 3611..3754 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig47507.11879.1

>prot_H-elongata_contig47507.11879.1 ID=prot_H-elongata_contig47507.11879.1|Name=mRNA_H-elongata_contig47507.11879.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=48bp
LSWCKRFLTVAPSSEDYIECESCNEWYHFSCEDLDETDPPDVYSCKRC
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mRNA from alignment at H-elongata_contig47507:3611..3754+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig47507.11879.1 ID=mRNA_H-elongata_contig47507.11879.1|Name=mRNA_H-elongata_contig47507.11879.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=144bp|location=Sequence derived from alignment at H-elongata_contig47507:3611..3754+ (Himanthalia elongata Himel1 dioecious)
TTGTCCTGGTGTAAACGGTTTCTCACCGTCGCCCCTTCAAGCGAGGACTA
CATCGAGTGCGAGAGCTGCAACGAGTGGTACCATTTCTCTTGCGAGGATC
TTGACGAGACAGATCCCCCGGATGTCTACAGCTGCAAGCGCTGC
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Coding sequence (CDS) from alignment at H-elongata_contig47507:3611..3754+

>mRNA_H-elongata_contig47507.11879.1 ID=mRNA_H-elongata_contig47507.11879.1|Name=mRNA_H-elongata_contig47507.11879.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=288bp|location=Sequence derived from alignment at H-elongata_contig47507:3611..3754+ (Himanthalia elongata Himel1 dioecious)
TTGTCCTGGTGTAAACGGTTTCTCACCGTCGCCCCTTCAAGCGAGGACTA
CATCGAGTGCGAGAGCTGCAACGAGTGGTACCATTTCTCTTGCGAGGATC
TTGACGAGACAGATCCCCCGGATGTCTACAGCTGCAAGCGCTGCTTGTCC
TGGTGTAAACGGTTTCTCACCGTCGCCCCTTCAAGCGAGGACTACATCGA
GTGCGAGAGCTGCAACGAGTGGTACCATTTCTCTTGCGAGGATCTTGACG
AGACAGATCCCCCGGATGTCTACAGCTGCAAGCGCTGC
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