mRNA_H-elongata_contig47497.11875.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig47497.11875.1
Unique NamemRNA_H-elongata_contig47497.11875.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig47497.11875.1 vs. uniprot
Match: D8LGI2_ECTSI (Histone deacetylase superfamily protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGI2_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 9.550e-8
Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:    1 VCGGRVVSILEGGYNLQAIADSAVEHVRALREAAAAAP 114
            VCGGRVVSILEGGYNLQAI+DSAV HV ALR+ AAAAP
Sbjct:  171 VCGGRVVSILEGGYNLQAISDSAVAHVHALRQGAAAAP 208
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BLAST of mRNA_H-elongata_contig47497.11875.1 vs. uniprot
Match: A0A6H5KT92_9PHAE (Hist_deacetyl domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT92_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 3.440e-6
Identity = 30/34 (88.24%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:    1 VCGGRVVSILEGGYNLQAIADSAVEHVRALREAA 102
            VCGGRVVSILEGGYNLQAI+DSAV HV ALR+AA
Sbjct:  385 VCGGRVVSILEGGYNLQAISDSAVAHVHALRQAA 418
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47497.11875.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGI2_ECTSI9.550e-886.84Histone deacetylase superfamily protein n=1 Tax=Ec... [more]
A0A6H5KT92_9PHAE3.440e-688.24Hist_deacetyl domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig47497contigH-elongata_contig47497:586..1701 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.1
Seed ortholog evalue4.8e-08
Seed eggNOG ortholog2880.D8LGI2
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006464,GO:0006476,GO:0006807,GO:0008092,GO:0008150,GO:0008152,GO:0009507,GO:0009536,GO:0009987,GO:0015631,GO:0016787,GO:0016810,GO:0016811,GO:0019213,GO:0019538,GO:0019899,GO:0019902,GO:0019903,GO:0033558,GO:0035601,GO:0036211,GO:0042903,GO:0043014,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043621,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0048487,GO:0051721,GO:0071704,GO:0090042,GO:0098732,GO:0140096,GO:1901564
EggNOG free text desc.NAD-dependent histone deacetylase activity (H3-K14 specific)
EggNOG OGsCOG0123@1,KOG1343@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size1117
Cds size663
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930784.723622-CDS-H-elongata_contig47497:585..12481622930784.723622-CDS-H-elongata_contig47497:585..1248Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47497 586..1248 +
1691679568.9841585-CDS-H-elongata_contig47497:585..12481691679568.9841585-CDS-H-elongata_contig47497:585..1248Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47497 586..1248 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930784.7390945-UTR-H-elongata_contig47497:1248..17011622930784.7390945-UTR-H-elongata_contig47497:1248..1701Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47497 1249..1701 +
1691679568.999274-UTR-H-elongata_contig47497:1248..17011691679568.999274-UTR-H-elongata_contig47497:1248..1701Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47497 1249..1701 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig47497.11875.1prot_H-elongata_contig47497.11875.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig47497 586..1248 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig47497.11875.1

>prot_H-elongata_contig47497.11875.1 ID=prot_H-elongata_contig47497.11875.1|Name=mRNA_H-elongata_contig47497.11875.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=221bp
VCGGRVVSILEGGYNLQAIADSAVEHVRALREAAAAAPFLPRSPSASSPD
KGDESLEAAARATELSSAEPLSGGDISNAARPQVEEILGKQTRFGHTVAD
GEGRAHLCDGTGSTSSATTEESALNAAAVAGASEITLAELLFSSSSDVGV
GLSGEGVASGTEELITAEQNLPETFRDCVSPGHSDGVIRVGWGGTSVPDP
KGIEECSDLMAQLGVNDGAD*
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mRNA from alignment at H-elongata_contig47497:586..1701+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig47497.11875.1 ID=mRNA_H-elongata_contig47497.11875.1|Name=mRNA_H-elongata_contig47497.11875.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1116bp|location=Sequence derived from alignment at H-elongata_contig47497:586..1701+ (Himanthalia elongata Himel1 dioecious)
GTTTGCGGGGGACGAGTTGTCTCAATCCTCGAAGGCGGCTACAATCTTCA
GGCGATCGCCGACAGCGCTGTCGAACACGTTCGAGCGCTGCGCGAAGCGG
CAGCAGCGGCGCCGTTTTTACCAAGGTCTCCGTCGGCGTCTTCCCCTGAC
AAGGGTGATGAGTCGCTTGAGGCAGCGGCGAGGGCGACTGAATTGAGCTC
GGCGGAACCGTTGTCAGGCGGAGATATCTCGAATGCCGCGCGTCCGCAGG
TGGAAGAAATATTGGGGAAGCAGACCCGCTTTGGCCATACTGTTGCCGAC
GGTGAAGGACGAGCGCACTTATGCGATGGAACCGGGAGCACTTCGAGCGC
CACGACTGAAGAGTCCGCACTCAATGCGGCCGCTGTGGCGGGTGCATCGG
AGATCACCCTGGCGGAGTTGTTGTTTTCTAGCTCCTCCGACGTCGGCGTC
GGGCTCTCGGGGGAAGGAGTGGCGTCGGGGACGGAAGAGCTCATTACAGC
CGAGCAGAATCTTCCAGAGACATTCAGAGATTGTGTGTCACCTGGGCACA
GCGATGGTGTGATCAGGGTTGGCTGGGGTGGGACGAGCGTGCCAGATCCC
AAAGGGATCGAAGAATGTAGTGACCTGATGGCGCAGCTGGGCGTGAACGA
TGGCGCTGATTGAAGCGTAGACATCGATCGCACCTCGGGGAAAAACGGAG
GCGAAAAGGGGGAGAAGAATATTTATTCTGCGTTGAAGCAGCCCCAAAAG
AGAACATATGACTCGGGGCTCTTTCGGCTGTTACTTCTATGAGATGACGG
TTGGGGACAAAGCGACGTCGCAGCCAGTTGTGACGGACGTGTAGTTCTTC
ATTGTCAATAGCAACAGCCCGCTCACTCTACCGAGAGTAAACAGGCGCGC
TATATATTTTGCGCCGAGAGGCGACAGCTTTCGCTGCTCGACTTGGTTGT
TGTGCTGTAGATGTCGAGGCTTCGCCTCGCTTAGCGAACGACTCCGATTG
CGAATTTTTTACCCTTTGCGATGATAAAACTTACATACTTTTGGTTTGAA
CGTTTTGTGTGGATGTAAATAATATGTTTATGCGTGAGTGCATGTGCGTG
TATGGATGTAATAGTT
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Coding sequence (CDS) from alignment at H-elongata_contig47497:586..1701+

>mRNA_H-elongata_contig47497.11875.1 ID=mRNA_H-elongata_contig47497.11875.1|Name=mRNA_H-elongata_contig47497.11875.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1326bp|location=Sequence derived from alignment at H-elongata_contig47497:586..1701+ (Himanthalia elongata Himel1 dioecious)
GTTTGCGGGGGACGAGTTGTCTCAATCCTCGAAGGCGGCTACAATCTTCA
GGCGATCGCCGACAGCGCTGTCGAACACGTTCGAGCGCTGCGCGAAGCGG
CAGCAGCGGCGCCGTTTTTACCAAGGTCTCCGTCGGCGTCTTCCCCTGAC
AAGGGTGATGAGTCGCTTGAGGCAGCGGCGAGGGCGACTGAATTGAGCTC
GGCGGAACCGTTGTCAGGCGGAGATATCTCGAATGCCGCGCGTCCGCAGG
TGGAAGAAATATTGGGGAAGCAGACCCGCTTTGGCCATACTGTTGCCGAC
GGTGAAGGACGAGCGCACTTATGCGATGGAACCGGGAGCACTTCGAGCGC
CACGACTGAAGAGTCCGCACTCAATGCGGCCGCTGTGGCGGGTGCATCGG
AGATCACCCTGGCGGAGTTGTTGTTTTCTAGCTCCTCCGACGTCGGCGTC
GGGCTCTCGGGGGAAGGAGTGGCGTCGGGGACGGAAGAGCTCATTACAGC
CGAGCAGAATCTTCCAGAGACATTCAGAGATTGTGTGTCACCTGGGCACA
GCGATGGTGTGATCAGGGTTGGCTGGGGTGGGACGAGCGTGCCAGATCCC
AAAGGGATCGAAGAATGTAGTGACCTGATGGCGCAGCTGGGCGTGAACGA
TGGCGCTGATTGAGTTTGCGGGGGACGAGTTGTCTCAATCCTCGAAGGCG
GCTACAATCTTCAGGCGATCGCCGACAGCGCTGTCGAACACGTTCGAGCG
CTGCGCGAAGCGGCAGCAGCGGCGCCGTTTTTACCAAGGTCTCCGTCGGC
GTCTTCCCCTGACAAGGGTGATGAGTCGCTTGAGGCAGCGGCGAGGGCGA
CTGAATTGAGCTCGGCGGAACCGTTGTCAGGCGGAGATATCTCGAATGCC
GCGCGTCCGCAGGTGGAAGAAATATTGGGGAAGCAGACCCGCTTTGGCCA
TACTGTTGCCGACGGTGAAGGACGAGCGCACTTATGCGATGGAACCGGGA
GCACTTCGAGCGCCACGACTGAAGAGTCCGCACTCAATGCGGCCGCTGTG
GCGGGTGCATCGGAGATCACCCTGGCGGAGTTGTTGTTTTCTAGCTCCTC
CGACGTCGGCGTCGGGCTCTCGGGGGAAGGAGTGGCGTCGGGGACGGAAG
AGCTCATTACAGCCGAGCAGAATCTTCCAGAGACATTCAGAGATTGTGTG
TCACCTGGGCACAGCGATGGTGTGATCAGGGTTGGCTGGGGTGGGACGAG
CGTGCCAGATCCCAAAGGGATCGAAGAATGTAGTGACCTGATGGCGCAGC
TGGGCGTGAACGATGGCGCTGATTGA
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