mRNA_H-elongata_contig47492.11874.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig47492.11874.1
Unique NamemRNA_H-elongata_contig47492.11874.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47492.11874.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig47492contigH-elongata_contig47492:351..1394 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size393
Cds size384
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig47492.11874.1prot_H-elongata_contig47492.11874.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig47492 360..1394 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930784.6080003-UTR-H-elongata_contig47492:350..3591622930784.6080003-UTR-H-elongata_contig47492:350..359Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47492 351..359 +
1691679568.9543724-UTR-H-elongata_contig47492:350..3591691679568.9543724-UTR-H-elongata_contig47492:350..359Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47492 351..359 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930784.6436892-CDS-H-elongata_contig47492:359..6071622930784.6436892-CDS-H-elongata_contig47492:359..607Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47492 360..607 +
1691679568.964883-CDS-H-elongata_contig47492:359..6071691679568.964883-CDS-H-elongata_contig47492:359..607Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47492 360..607 +
1622930784.6559036-CDS-H-elongata_contig47492:1258..13941622930784.6559036-CDS-H-elongata_contig47492:1258..1394Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47492 1259..1394 +
1691679568.9740362-CDS-H-elongata_contig47492:1258..13941691679568.9740362-CDS-H-elongata_contig47492:1258..1394Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47492 1259..1394 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig47492.11874.1

>prot_H-elongata_contig47492.11874.1 ID=prot_H-elongata_contig47492.11874.1|Name=mRNA_H-elongata_contig47492.11874.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=128bp
MTQQQPPQQQQSQVQLPSPQIPVQQGQQQLQQQPRGFTIQGHPGTGLVSR
PPQTPPQPRRLSGTMGMGGGVHGGGSSPHDHGGDGGQGDDMVSGHSRRGR
GSGRGGRGGGLSRQNSASRKHRVSRSGS
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mRNA from alignment at H-elongata_contig47492:351..1394+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig47492.11874.1 ID=mRNA_H-elongata_contig47492.11874.1|Name=mRNA_H-elongata_contig47492.11874.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1044bp|location=Sequence derived from alignment at H-elongata_contig47492:351..1394+ (Himanthalia elongata Himel1 dioecious)
GAAAATAAGATGACGCAACAACAGCCGCCGCAGCAACAGCAGTCACAGGT
GCAACTCCCATCTCCCCAGATTCCTGTGCAGCAAGGACAGCAGCAGCTGC
AGCAACAACCGAGGGGTTTCACAATACAGGGCCACCCGGGGACGGGGCTA
GTTTCCAGACCGCCCCAAACTCCCCCTCAGCCTCGGCGACTAAGCGGAAC
GATGGGTATGGGAGGAGGCGTGCACGGAGGAGGGAGCAGCCCGCACGATC
ACGGAGGGTAAGATAAGGAAAATAAAGGGAGATAATGAGGGTAAAGACAT
ATTTGAGCAGTTGGAGCAGCACTAACAGCGGACGCACGCTTCGGCATAAT
CGGCGTGGTATTTATTTCCGGGGAGTGTCTTTGCCCCATTTCCCCTCATA
CCCTCCGAGCCATGGGCACCCTACACAATGGACTCATTGTCACTTCTGTA
AGGCACATATGCACATGAGTACGACCAATCCCGCCGGATTGACGACGTCG
GGATGATCATATGCTTTATAAAGCTTCTTTTGTCTCGCTTTCTTCAGAGA
GATGCTCGAATCGAATTTAGAGTACTACGGACTCTGTGCGGTATGGATAC
GGTCCGTGCCACTGCCTTGCCCCGCTCCCTTATTTGGAGGGAAGTTGTTG
GGAAATTGGGTCCACAAAGTAGCAATGGAAAAACGATTGGTGATTCTCAT
TTCTGTAAATATTTCAAACTCATTTAGAGAAGGGATGTTTGCTAGCGCTG
CGACTGCGGTTGCTCTAATTGTATTTAGCCCCCTTCCATCCCCTCGCATT
TCGCTTTTCGCTTGACCATCGTTCATCGTTCTAGCCGATACCCGCGTGTG
TCTTTCTTTTTTAACTCCTTCCCCTTTCTGCTATGGTTTCTTATGACTAT
GGGCACAGTGACGGGGGACAAGGGGATGACATGGTCAGCGGCCATTCGAG
ACGGGGCAGGGGCAGCGGCAGAGGGGGCCGAGGGGGTGGACTGTCCCGAC
AAAATAGCGCGTCTCGAAAGCACAGGGTGAGTCGCAGTGGCAGC
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Coding sequence (CDS) from alignment at H-elongata_contig47492:351..1394+

>mRNA_H-elongata_contig47492.11874.1 ID=mRNA_H-elongata_contig47492.11874.1|Name=mRNA_H-elongata_contig47492.11874.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=768bp|location=Sequence derived from alignment at H-elongata_contig47492:351..1394+ (Himanthalia elongata Himel1 dioecious)
ATGACGCAACAACAGCCGCCGCAGCAACAGCAGTCACAGGTGCAACTCCC
ATCTCCCCAGATTCCTGTGCAGCAAGGACAGCAGCAGCTGCAGCAACAAC
CGAGGGGTTTCACAATACAGGGCCACCCGGGGACGGGGCTAGTTTCCAGA
CCGCCCCAAACTCCCCCTCAGCCTCGGCGACTAAGCGGAACGATGGGTAT
GGGAGGAGGCGTGCACGGAGGAGGGAGCAGCCCGCACGATCACGGAGGAT
GACGCAACAACAGCCGCCGCAGCAACAGCAGTCACAGGTGCAACTCCCAT
CTCCCCAGATTCCTGTGCAGCAAGGACAGCAGCAGCTGCAGCAACAACCG
AGGGGTTTCACAATACAGGGCCACCCGGGGACGGGGCTAGTTTCCAGACC
GCCCCAAACTCCCCCTCAGCCTCGGCGACTAAGCGGAACGATGGGTATGG
GAGGAGGCGTGCACGGAGGAGGGAGCAGCCCGCACGATCACGGAGGTGAC
GGGGGACAAGGGGATGACATGGTCAGCGGCCATTCGAGACGGGGCAGGGG
CAGCGGCAGAGGGGGCCGAGGGGGTGGACTGTCCCGACAAAATAGCGCGT
CTCGAAAGCACAGGGTGAGTCGCAGTGGCAGCTGACGGGGGACAAGGGGA
TGACATGGTCAGCGGCCATTCGAGACGGGGCAGGGGCAGCGGCAGAGGGG
GCCGAGGGGGTGGACTGTCCCGACAAAATAGCGCGTCTCGAAAGCACAGG
GTGAGTCGCAGTGGCAGC
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