mRNA_H-elongata_contig47472.11872.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig47472.11872.1
Unique NamemRNA_H-elongata_contig47472.11872.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig47472.11872.1 vs. uniprot
Match: A0A6H5L007_9PHAE (Choline transporter-like protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L007_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 1.900e-11
Identity = 29/35 (82.86%), Postives = 31/35 (88.57%), Query Frame = 1 
Query:    1 TTLTILQCFIADEEMFSTSERYARNDLKEWLDKHG 105
            TTLTILQCFIADEEMF   +RYARNDLK+WLD HG
Sbjct:  642 TTLTILQCFIADEEMFEGEDRYARNDLKDWLDAHG 676
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BLAST of mRNA_H-elongata_contig47472.11872.1 vs. uniprot
Match: D8LIJ7_ECTSI (Choline transporter-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIJ7_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 1.900e-11
Identity = 29/35 (82.86%), Postives = 31/35 (88.57%), Query Frame = 1 
Query:    1 TTLTILQCFIADEEMFSTSERYARNDLKEWLDKHG 105
            TTLTILQCFIADEEMF   +RYARNDLK+WLD HG
Sbjct:  586 TTLTILQCFIADEEMFEGEDRYARNDLKDWLDAHG 620
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BLAST of mRNA_H-elongata_contig47472.11872.1 vs. uniprot
Match: A0A835Z6J7_9STRA (Choline transporter-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6J7_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 3.440e-8
Identity = 25/35 (71.43%), Postives = 31/35 (88.57%), Query Frame = 1 
Query:    1 TTLTILQCFIADEEMFSTSERYARNDLKEWLDKHG 105
            TT TILQCFIADEEM+S +ERYA NDLK++++ HG
Sbjct:  577 TTATILQCFIADEEMYSPAERYADNDLKDFVNTHG 611
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BLAST of mRNA_H-elongata_contig47472.11872.1 vs. uniprot
Match: D7FRZ5_ECTSI (Choline transporter-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRZ5_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 1.650e-7
Identity = 21/32 (65.62%), Postives = 28/32 (87.50%), Query Frame = 1 
Query:   10 TILQCFIADEEMFSTSERYARNDLKEWLDKHG 105
            TILQCF+ADEE+F  S+++A NDL+ W+DKHG
Sbjct:  440 TILQCFVADEELFPPSQQFAENDLRGWVDKHG 471
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BLAST of mRNA_H-elongata_contig47472.11872.1 vs. uniprot
Match: A0A6H5JW76_9PHAE (Choline transporter-like protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW76_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 4.210e-7
Identity = 20/32 (62.50%), Postives = 28/32 (87.50%), Query Frame = 1 
Query:   10 TILQCFIADEEMFSTSERYARNDLKEWLDKHG 105
            TILQCF+ADEE+F  ++++A NDL+ W+DKHG
Sbjct:  559 TILQCFVADEELFPPTQQFAENDLRGWVDKHG 590
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BLAST of mRNA_H-elongata_contig47472.11872.1 vs. uniprot
Match: A0A7S2HA85_9STRA (Choline transporter-like protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HA85_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 7.860e-7
Identity = 22/31 (70.97%), Postives = 25/31 (80.65%), Query Frame = 1 
Query:   10 TILQCFIADEEMFSTSERYARNDLKEWLDKH 102
            TILQCFIADEEMF   E YA  DL+EW+DK+
Sbjct:  641 TILQCFIADEEMFDGDEMYAEGDLREWIDKY 671
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BLAST of mRNA_H-elongata_contig47472.11872.1 vs. uniprot
Match: A0A7S2UZM6_9STRA (Choline transporter-like protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZM6_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 2.210e-6
Identity = 22/33 (66.67%), Postives = 26/33 (78.79%), Query Frame = 1 
Query:    7 LTILQCFIADEEMFSTSERYARNDLKEWLDKHG 105
            LTILQCFIADEEMF  S+ YA  DLK+++D  G
Sbjct:  121 LTILQCFIADEEMFDPSQMYAHGDLKDYIDTFG 153
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BLAST of mRNA_H-elongata_contig47472.11872.1 vs. uniprot
Match: A0A6H5KUR6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUR6_9PHAE)

HSP 1 Score: 45.1 bits (105), Expect = 3.400e-5
Identity = 20/30 (66.67%), Postives = 22/30 (73.33%), Query Frame = 1 
Query:   10 TILQCFIADEEMFSTSERYARNDLKEWLDK 99
            TILQCFIADEEMF   +RY   DL + LDK
Sbjct:    5 TILQCFIADEEMFKGDDRYGEGDLADMLDK 34
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47472.11872.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5L007_9PHAE1.900e-1182.86Choline transporter-like protein n=1 Tax=Ectocarpu... [more]
D8LIJ7_ECTSI1.900e-1182.86Choline transporter-like protein n=1 Tax=Ectocarpu... [more]
A0A835Z6J7_9STRA3.440e-871.43Choline transporter-like protein n=1 Tax=Tribonema... [more]
D7FRZ5_ECTSI1.650e-765.63Choline transporter-like protein n=1 Tax=Ectocarpu... [more]
A0A6H5JW76_9PHAE4.210e-762.50Choline transporter-like protein n=1 Tax=Ectocarpu... [more]
A0A7S2HA85_9STRA7.860e-770.97Choline transporter-like protein n=1 Tax=Helicothe... [more]
A0A7S2UZM6_9STRA2.210e-666.67Choline transporter-like protein n=2 Tax=Fibrocaps... [more]
A0A6H5KUR6_9PHAE3.400e-566.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig47472contigH-elongata_contig47472:3040..3144 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.6
Seed ortholog evalue2.6e-09
Seed eggNOG ortholog2880.D8LIJ7
KEGG koko:K06515,ko:K15377
KEGG TC2.A.92.1,2.A.92.1.1
KEGG Pathwayko05231,map05231
EggNOG free text desc.choline transmembrane transporter activity
EggNOG OGsKOG1362@1,KOG1362@2759
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko04090,ko04147
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size105
Cds size105
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930784.3091054-CDS-H-elongata_contig47472:3039..31441622930784.3091054-CDS-H-elongata_contig47472:3039..3144Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47472 3040..3144 +
1691679568.80375-CDS-H-elongata_contig47472:3039..31441691679568.80375-CDS-H-elongata_contig47472:3039..3144Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47472 3040..3144 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig47472.11872.1prot_H-elongata_contig47472.11872.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig47472 3040..3144 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig47472.11872.1

>prot_H-elongata_contig47472.11872.1 ID=prot_H-elongata_contig47472.11872.1|Name=mRNA_H-elongata_contig47472.11872.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=35bp
TTLTILQCFIADEEMFSTSERYARNDLKEWLDKHG
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mRNA from alignment at H-elongata_contig47472:3040..3144+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig47472.11872.1 ID=mRNA_H-elongata_contig47472.11872.1|Name=mRNA_H-elongata_contig47472.11872.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=105bp|location=Sequence derived from alignment at H-elongata_contig47472:3040..3144+ (Himanthalia elongata Himel1 dioecious)
ACTACGCTGACTATACTCCAGTGCTTCATCGCCGACGAGGAAATGTTCTC
GACGAGCGAACGCTATGCGCGCAACGATCTCAAGGAGTGGCTCGACAAGC
ACGGG
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Coding sequence (CDS) from alignment at H-elongata_contig47472:3040..3144+

>mRNA_H-elongata_contig47472.11872.1 ID=mRNA_H-elongata_contig47472.11872.1|Name=mRNA_H-elongata_contig47472.11872.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=210bp|location=Sequence derived from alignment at H-elongata_contig47472:3040..3144+ (Himanthalia elongata Himel1 dioecious)
ACTACGCTGACTATACTCCAGTGCTTCATCGCCGACGAGGAAATGTTCTC
GACGAGCGAACGCTATGCGCGCAACGATCTCAAGGAGTGGCTCGACAAGC
ACGGGACTACGCTGACTATACTCCAGTGCTTCATCGCCGACGAGGAAATG
TTCTCGACGAGCGAACGCTATGCGCGCAACGATCTCAAGGAGTGGCTCGA
CAAGCACGGG
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