mRNA_H-elongata_contig47472.11871.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig47472.11871.1 vs. uniprot
Match: D8LIJ7_ECTSI (Choline transporter-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIJ7_ECTSI) HSP 1 Score: 276 bits (705), Expect = 1.200e-86 Identity = 136/172 (79.07%), Postives = 156/172 (90.70%), Query Frame = 1
Query: 1 IGNFTFFKALKEGLRYHTGTAAFGSLIIAIIKMIRAVLTYIQKQLQASGNKVAQAILCCLQCFFWCLEKCVKFISKNAYVQVAIFSTSFCESAKNAFWLIARNLSRVGTVTVVTDFVSLIMKLVISLGVAGALYLFLQNFMEEDIYSPVGPVLFAGVMAYFVADAFASLLGM 516
+ N TF+K+LKEGLR+HTGTAAFGSLIIAIIK IRA+LTY+QK+LQ SG+K AQA+LCCL CFFWCLEKCVKFI+KNAY+QVAIFSTSFC S+KNAFWLIARNL RVG VTVVTDFV IMKLVI LG AGA Y+FLQNFM++D+YSP+GPV FAGVMAY+VA +FA+LLGM
Sbjct: 414 VNNGTFWKSLKEGLRFHTGTAAFGSLIIAIIKTIRAMLTYMQKKLQKSGSKAAQAVLCCLSCFFWCLEKCVKFINKNAYIQVAIFSTSFCRSSKNAFWLIARNLGRVGAVTVVTDFVVFIMKLVIGLGTAGATYVFLQNFMKDDLYSPMGPVFFAGVMAYYVASSFAALLGM 585
BLAST of mRNA_H-elongata_contig47472.11871.1 vs. uniprot
Match: A0A6H5L007_9PHAE (Choline transporter-like protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L007_9PHAE) HSP 1 Score: 213 bits (541), Expect = 4.330e-62 Identity = 109/154 (70.78%), Postives = 124/154 (80.52%), Query Frame = 1
Query: 100 IRAVLTYIQKQLQASGNKVAQAILCCLQCFFWCLEKCVKFISKNAYVQVAIFSTSFCESAKNAFWLIARNLSRVGTVTVVTDFVSLIMKL---------------VISLGVAGALYLFLQNFMEEDIYSPVGPVLFAGVMAYFVADAFASLLGM 516
IRAVLTY+QK+LQ SG+K AQA+LCCL CFFWCLEKCV+FI+KNAY+QVAIFSTSFC S+KNAFWLIARNL RVG VTVVTDFV IMKL VI LG AG Y+FLQ FM+ED+YSP+GPV FAGVMAY+VA +FA+LLGM
Sbjct: 488 IRAVLTYMQKKLQKSGSKAAQAVLCCLSCFFWCLEKCVRFINKNAYIQVAIFSTSFCRSSKNAFWLIARNLGRVGAVTVVTDFVVFIMKLLCITPTCIFRVKLTQVIGLGTAGVTYVFLQKFMKEDLYSPMGPVFFAGVMAYYVASSFAALLGM 641
BLAST of mRNA_H-elongata_contig47472.11871.1 vs. uniprot
Match: A0A835Z6J7_9STRA (Choline transporter-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6J7_9STRA) HSP 1 Score: 205 bits (522), Expect = 9.250e-60 Identity = 101/172 (58.72%), Postives = 134/172 (77.91%), Query Frame = 1
Query: 1 IGNFTFFKALKEGLRYHTGTAAFGSLIIAIIKMIRAVLTYIQKQLQASGNKVAQAILCCLQCFFWCLEKCVKFISKNAYVQVAIFSTSFCESAKNAFWLIARNLSRVGTVTVVTDFVSLIMKLVISLGVAGALYLFLQNFMEEDIYSPVGPVLFAGVMAYFVADAFASLLGM 516
+G+ TFFKA+K+G+ YH GTAAFGSLIIAII+MIRA++ + QK+ +ASGNK+AQ LCC QC FWCL+KC++FI+KNAY+Q A+FST FC+S K AF+LIARN+ RVG V++V++F+ +IMKLVI L A YL L + +++S VGP +F GV+AY VA FA L M
Sbjct: 405 LGSGTFFKAMKDGMWYHMGTAAFGSLIIAIIQMIRAIIAWFQKKAKASGNKIAQYALCCCQCCFWCLQKCMQFINKNAYIQTALFSTGFCKSGKEAFFLIARNIVRVGAVSMVSEFMIIIMKLVICLATMAATYLGLDATIGNELHSFVGPTIFVGVLAYLVASVFAELFSM 576
BLAST of mRNA_H-elongata_contig47472.11871.1 vs. uniprot
Match: W7TBK4_9STRA (Choline transporter-like protein n=6 Tax=Monodopsidaceae TaxID=425072 RepID=W7TBK4_9STRA) HSP 1 Score: 171 bits (434), Expect = 7.920e-47 Identity = 89/174 (51.15%), Postives = 125/174 (71.84%), Query Frame = 1
Query: 1 IGNFTFFKALKEGLRYHTGTAAFGSLIIAIIKMIRAVLTYIQKQLQASGNKVAQAILCCLQCFFWCLEKCVKFISKNAYVQVAIFSTSFCESAKNAFWLIARNLSRVGTVTVVTDFVSLIMKLVISLGVAGALYLFLQNFMEED-IYSPVGPVLFAGVMAYFVADAFASLLGMA 519
IG+ T KA+ YH GTAAFGSL+IA+++ IR+++ YIQK L+ S NKVAQ +LCC QC FWCLEK +KF++KNAY+Q A+ TSFC S K AF+LIARN+ R+G V++V++FV +I K+ +S+ AGA+ + F ED I+SP+GP + ++A+F AD F + MA
Sbjct: 446 IGSGTLCKAVGITGLYHLGTAAFGSLVIAVVEAIRSIIAYIQKILKRSENKVAQYLLCCCQCGFWCLEKILKFVNKNAYIQTAVNGTSFCTSGKMAFFLIARNIMRIGAVSLVSEFVIIIGKVFVSV-TAGAISFYTMTFFLEDRIHSPIGPTILVVILAWFTADMFCQIFSMA 618
BLAST of mRNA_H-elongata_contig47472.11871.1 vs. uniprot
Match: A0A6H5JW76_9PHAE (Choline transporter-like protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW76_9PHAE) HSP 1 Score: 169 bits (427), Expect = 3.240e-46 Identity = 82/173 (47.40%), Postives = 119/173 (68.79%), Query Frame = 1
Query: 1 IGNFTFFKALKEGLRYHTGTAAFGSLIIAIIKMIRAVLTYIQKQLQASGNKVAQAILCCLQCFFWCLEKCVKFISKNAYVQVAIFSTSFCESAKNAFWLIARNLSRVGTVTVVTDFVSLIMKLVISLGVAGALYLFLQNFMEEDIYSPVGPVLFAGVMAYFVADAFASLLGMA 519
+G+ T ++ + +H GTAAFG LI+AI++MIRA+LTYIQK+ + SGNKV Q I CC C FWCLE C++FI+KNAYVQ AIFST+FC SA+NAF+LIARN++RV VT++ +FV +M + + + +Y+ + + + + S VGP + V+AY+ + GMA
Sbjct: 384 VGSLTVVSSVGKTFAFHIGTAAFGGLIVAIVEMIRAILTYIQKKAEKSGNKVVQYIACCCVCCFWCLENCLRFINKNAYVQTAIFSTNFCTSARNAFYLIARNIARVAAVTILGEFVLNVMTVFVCIVTTLGVYVAMDSNIRSQLNSLVGPTIMTAVLAYYTGKMVTGVYGMA 556
BLAST of mRNA_H-elongata_contig47472.11871.1 vs. uniprot
Match: A0A7S2V489_9STRA (Choline transporter-like protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V489_9STRA) HSP 1 Score: 162 bits (409), Expect = 4.510e-45 Identity = 83/173 (47.98%), Postives = 122/173 (70.52%), Query Frame = 1
Query: 1 IGNFTFFKALKEGLRYHTGTAAFGSLIIAIIKMIRAVLTYIQKQLQASGNKVAQAILCCLQCFFWCLEKCVKFISKNAYVQVAIFSTSFCESAKNAFWLIARNLSRVGTVTVVTDFVSLIMKLVISLGVAGALYLFLQNFMEEDIYSPVGPVLFAGVMAYFVADAFASLLGMA 519
IG+ T FK++K + YH+GT AFGSLIIAIIK IRAV++YIQK+ SGNK+A A+LCC+Q +EKC+KF++KNAY+Q AI+ SFC++A+ AF+LIARN+ R+ V +V ++V I K+VI+L +L + + M + ++ P +F ++AYFV+ F + GMA
Sbjct: 166 IGSSTVFKSIKMSMWYHSGTCAFGSLIIAIIKTIRAVVSYIQKKAAKSGNKIAVALLCCIQXXXXXIEKCMKFLNKNAYIQTAIYGYSFCKAARKAFFLIARNILRITAVALVGNYVLFIGKMVITLLATFLAFLVMDSTMSDKLHGLYAPTIFTFILAYFVSLMFVEVFGMA 338
BLAST of mRNA_H-elongata_contig47472.11871.1 vs. uniprot
Match: A0A1Z5JIP5_FISSO (Choline transporter-like protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JIP5_FISSO) HSP 1 Score: 162 bits (409), Expect = 2.240e-43 Identity = 78/173 (45.09%), Postives = 122/173 (70.52%), Query Frame = 1
Query: 1 IGNFTFFKALKEGLRYHTGTAAFGSLIIAIIKMIRAVLTYIQKQLQASGNKVAQAILCCLQCFFWCLEKCVKFISKNAYVQVAIFSTSFCESAKNAFWLIARNLSRVGTVTVVTDFVSLIMKLVISLGVAGALYLFLQNFMEEDIYSPVGPVLFAGVMAYFVADAFASLLGMA 519
+G++T +++E + YH GT A+GSL++AI++ IR ++ +QK+ + + NK+A+ ILCC QC FWCLE+C+KFI+KNAY+Q AIFSTSFC+S + +F+LI RN +RVG VT V+ V +I KL IS G Y+ + + ++++S GPV ++AY+++D F + MA
Sbjct: 470 VGSWTVISSVRETVTYHLGTCAYGSLLVAIVQFIRYIIAKLQKKAKETQNKIAEYILCCCQCCFWCLERCLKFINKNAYIQTAIFSTSFCKSCRASFFLIFRNAARVGAVTYVSSAVLIIGKLFISAVTTGFAYIAITERLSDELFSVGGPVTITFLIAYWMSDFFMGVFDMA 642
BLAST of mRNA_H-elongata_contig47472.11871.1 vs. uniprot
Match: A0A6V2WBV2_HETAK (Choline transporter-like protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2WBV2_HETAK) HSP 1 Score: 161 bits (407), Expect = 2.410e-43 Identity = 80/165 (48.48%), Postives = 113/165 (68.48%), Query Frame = 1
Query: 22 KALKEGLRYHTGTAAFGSLIIAIIKMIRAVLTYIQKQLQASGNKVAQAILCCLQCFFWCLEKCVKFISKNAYVQVAIFSTSFCESAKNAFWLIARNLSRVGTVTVVTDFVSLIMKLVISLGVAGALYLFLQNFMEEDIYSPVGPVLFAGVMAYFVADAFASLLGM 516
K++ L YHTGTAAFGSLIIAII+++RA L Y+QK+ +A+ NK A A+LC LQC WC EKC+KF++KNAY+ A+FS FC +AK AF LIARN++RV V++V+ F+ +I +L ++LG A Y L+ +M + + S + P +AY V+ F L M
Sbjct: 406 KSMVATLWYHTGTAAFGSLIIAIIQLVRAFLAYVQKKTKAANNKFADALLCVLQCCLWCFEKCMKFLNKNAYIHTALFSDKFCHAAKEAFLLIARNIARVAAVSLVSQFIMIIAELFMTLGAATLCYFLLEIYMADQLTSLLYPTAMTAALAYCVSKIFVETLSM 570
BLAST of mRNA_H-elongata_contig47472.11871.1 vs. uniprot
Match: A0A7S2Y2B5_9STRA (Choline transporter-like protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y2B5_9STRA) HSP 1 Score: 160 bits (406), Expect = 3.910e-43 Identity = 85/173 (49.13%), Postives = 123/173 (71.10%), Query Frame = 1
Query: 1 IGNFTFFKALKEGLRYHTGTAAFGSLIIAIIKMIRAVLTYIQKQLQASGNKVAQAILCCLQCFFWCLEKCVKFISKNAYVQVAIFSTSFCESAKNAFWLIARNLSRVGTVTVVTDFVSLIMKLVISLGVAGALYLFLQNFMEEDIYSPVGPVLFAGVMAYFVADAFASLLGMA 519
IGN T FKA++ + YH+GT AFGSLIIAIIK IRAV++Y+QK+ SGNK+AQA+LCC+Q +KF++KNAY+Q AI+ SFC++A+ AF+LIARN+ RV V +V +++ I KLVI++ +L L + ME++++ GP++F ++AYFVA F + GMA
Sbjct: 400 IGNLTVFKAIRVSMWYHSGTCAFGSLIIAIIKTIRAVISYLQKKAAQSGNKLAQAVLCCIQXXXXXXXXXMKFLNKNAYIQTAIYGYSFCKAARKAFFLIARNILRVVAVALVGNYILFIGKLVITVVTTFLAFLVLDS-MEDELHGLYGPIIFTFLLAYFVALMFVEVFGMA 571
BLAST of mRNA_H-elongata_contig47472.11871.1 vs. uniprot
Match: A0A7R9YAE8_9STRA (Choline transporter-like protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YAE8_9STRA) HSP 1 Score: 161 bits (408), Expect = 4.170e-43 Identity = 84/168 (50.00%), Postives = 120/168 (71.43%), Query Frame = 1
Query: 19 FKALKEGLRYHTGTAAFGSLIIAIIKMIRAVLTYIQKQLQASGNKVAQAILCCLQCFFWCLEKCVKFISKNAYVQVAIFSTSFCESAKNAFWLIARNLSRVGTVTVVTDFVSLIMKL-VISLGVAGALYLFLQNFMEEDIYSPVGPVLFAGVMAYFVADAFASLLGMA 519
F+++ LR+HTGTAAFG+LI+AI+++IRAV+TY+QK+ + SGNKVA+ ILC QC FWC EKCVKF+S+NAY+Q AIF FC AK+AF+LI RN RVG +T V FV I K+ ++S+ AG+ +L ++ ++I PVLF +++Y+ AD F + +A
Sbjct: 509 FRSVGLVLRFHTGTAAFGALILAIVQIIRAVITYMQKKAKESGNKVAEYILCLCQCCFWCFEKCVKFLSQNAYIQTAIFGKGFCSGAKDAFFLILRNFLRVGALTAVGGFVMSIGKIFIVSIATAGSFFL-IEEIYGDEINGLFLPVLFVFILSYYTADMFLDIYEIA 675 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47472.11871.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig47472.11871.1 >prot_H-elongata_contig47472.11871.1 ID=prot_H-elongata_contig47472.11871.1|Name=mRNA_H-elongata_contig47472.11871.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=173bp IGNFTFFKALKEGLRYHTGTAAFGSLIIAIIKMIRAVLTYIQKQLQASGNback to top mRNA from alignment at H-elongata_contig47472:591..2303+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig47472.11871.1 ID=mRNA_H-elongata_contig47472.11871.1|Name=mRNA_H-elongata_contig47472.11871.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1713bp|location=Sequence derived from alignment at H-elongata_contig47472:591..2303+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig47472:591..2303+ >mRNA_H-elongata_contig47472.11871.1 ID=mRNA_H-elongata_contig47472.11871.1|Name=mRNA_H-elongata_contig47472.11871.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1038bp|location=Sequence derived from alignment at H-elongata_contig47472:591..2303+ (Himanthalia elongata Himel1 dioecious)back to top |