mRNA_H-elongata_contig4747.11870.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig4747.11870.1
Unique NamemRNA_H-elongata_contig4747.11870.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig4747.11870.1 vs. uniprot
Match: D8LAV3_ECTSI (Methylase-related n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAV3_ECTSI)

HSP 1 Score: 337 bits (864), Expect = 3.750e-108
Identity = 179/269 (66.54%), Postives = 209/269 (77.70%), Query Frame = 1 
Query:  496 ARDAARAAQAALQRQDSAAAELGLSAKDGLGTASVATSDVSKTGATHGGVRVDAPDDEGEEDLMG-KEPDSARTTRNSPAASHSHLSHLLWRQVAGPGDTVVDCTAGNGHDTLELAKIVALNDGVGKLYAMDVQDRALEATLARLESELGRMATKRSTLVKGNFCQLPAELGACSVQLIVYNLGWLPGGDKSITTVLEDTLESIDSAKRLVKSGGMISIMLYQGHPEGKRETEAVLEYAAGLPHNRWRVFVHDRVNRTGSPVLLTIYKL 1299
            A+DA    QAAL R+DSA  ELG  + +      VA      T    G V      D GEE   G KEP+SAR +RN+PAASHSH++HLLWRQVAGPGDTV+DCTAGNGHD+LELAKIVAL DGVG LY MDVQ+RA+EAT  RL SELG +A KRSTL+ GNF ++PAEL   SVQL+VYNLGWLPGGDKSITT LEDTLESI++AKR+VK GGMIS+MLY+GH EGKRETEAV +YAAGL H++WRVF+H+R+NR  SP LLTI+KL
Sbjct:  191 AQDAIGMVQAALDRRDSATVELGAESSEDT---PVAAETAVLTSRGDGSVS-----DGGEEGGDGTKEPESARWSRNNPAASHSHMAHLLWRQVAGPGDTVLDCTAGNGHDSLELAKIVALKDGVGSLYVMDVQERAIEATRERLRSELGELALKRSTLINGNFREMPAELEPLSVQLVVYNLGWLPGGDKSITTKLEDTLESIEAAKRVVKHGGMISVMLYRGHAEGKRETEAVRDYAAGLAHSQWRVFMHERINRADSPELLTIFKL 451
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BLAST of mRNA_H-elongata_contig4747.11870.1 vs. uniprot
Match: A0A6H5JPN0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPN0_9PHAE)

HSP 1 Score: 327 bits (839), Expect = 2.480e-104
Identity = 172/268 (64.18%), Postives = 204/268 (76.12%), Query Frame = 1 
Query:  496 ARDAARAAQAALQRQDSAAAELGLSAKDGLGTASVATSDVSKTGATHGGVRVDAPDDEGEEDLMGKEPDSARTTRNSPAASHSHLSHLLWRQVAGPGDTVVDCTAGNGHDTLELAKIVALNDGVGKLYAMDVQDRALEATLARLESELGRMATKRSTLVKGNFCQLPAELGACSVQLIVYNLGWLPGGDKSITTVLEDTLESIDSAKRLVKSGGMISIMLYQGHPEGKRETEAVLEYAAGLPHNRWRVFVHDRVNRTGSPVLLTIYKL 1299
            A+DA    QAAL R+DSAA ELG  + +    A+ A    S+ G   G                 KEP+SAR +RN+PAASHSH++HLLWRQVAGPGDTV+DCTAGNGHD+LELAKIVAL DGVG LY MD  +RA+EAT  RL SELG +A KRSTL+  NF ++PAEL   SVQL+VYNLGWLPGGDKSITT LEDTLESI++AKR+VK GGMIS+MLY+GH EGKRETEAV +YAA L H++WRVF+H+R+NR GSP LLTI+KL
Sbjct:  205 AQDAIGMVQAALDRRDSAAVELGAKSSEDTQVAAEAAVLTSRGGEESGDGT--------------KEPESARWSRNNPAASHSHMAHLLWRQVAGPGDTVLDCTAGNGHDSLELAKIVALKDGVGSLYIMD--ERAIEATRERLRSELGELALKRSTLINSNFREMPAELEPLSVQLVVYNLGWLPGGDKSITTTLEDTLESIEAAKRVVKHGGMISVMLYRGHAEGKRETEAVRDYAASLAHSQWRVFMHERINRAGSPELLTIFKL 456
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BLAST of mRNA_H-elongata_contig4747.11870.1 vs. uniprot
Match: A0A0G4GWR6_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GWR6_VITBC)

HSP 1 Score: 169 bits (428), Expect = 1.920e-46
Identity = 87/197 (44.16%), Postives = 127/197 (64.47%), Query Frame = 1 
Query:  721 NSPAASHSHLSHLLWRQVAGPGDTVVDCTAGNGHDTLELAKIVALNDG----VGKLYAMDVQDRALEATLARLESELGRMATKRSTLVKGNFCQLPAELGACSVQLIVYNLGWLPGGDKSITTVLEDTLESIDSAKRLVKSGGMISIMLYQGHPEGKRETEAVLEYAAGLPHNRWRVFVHDRVNRTGSPVLLTIYKL 1299
            +SP ASH  LS LLW+Q   PG   VD T GNG D+L L+ ++  +DG      +L  +DVQ  A+ +T + L  EL     +R  L   +  + P  +   SV +IVYNLG+LPGGDKS+TT  + T+ S+ +A +L+  GG+IS+MLY+GHPEG  E++ V+ +A+ LP + WRVF+H+ +NR  SP L+T+Y+L
Sbjct:    9 SSPLASHLPLSRLLWKQGLKPGGRAVDATCGNGKDSLFLSTLIFPSDGDDETEAELICIDVQREAIGSTRSLLAEELRPPHLERIRLFHQSHERFPDCIADNSVDVIVYNLGYLPGGDKSVTTRHDTTITSLTAALKLIVKGGLISVMLYRGHPEGTVESDGVISWASQLPADEWRVFLHEPLNRPTSPALMTLYRL 205
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BLAST of mRNA_H-elongata_contig4747.11870.1 vs. uniprot
Match: A0A836C882_9STRA (Putative rRNA methylase-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C882_9STRA)

HSP 1 Score: 168 bits (425), Expect = 4.820e-46
Identity = 85/198 (42.93%), Postives = 124/198 (62.63%), Query Frame = 1 
Query:  748 LSHLLWRQVAGPGDTVVDCTAGNGHDTLELAKIVALNDGV---------GKLYAMDVQDRALEATLARLESELGRMATKRSTLVKGNFCQLPAE----LGACSVQLIVYNLGWLPGGDKSITTVLEDTLESIDSAKRLVKSGGMISIMLYQGHPEGKRETEAVLEYAAGLPHNRWRVFVHDRVNRT-GSPVLLTIYKL 1299
            L+HLLW+    PGD V+DCTAG G+D+L LA+++  +  +         G+L  +DVQ+ A+  T ARL+  L   A +R ++++ +FC+LP      +   SV L+ YNLG+LPG DKS+ + ++DTL+S++ A +LVK GG IS+  Y GH EG  E  AV E+ AGL    WRVF H R+N   G P+L+  YK+
Sbjct:    2 LAHLLWKSAVSPGDIVIDCTAGKGYDSLVLARLLFPDSALDGEAAAAAQGQLVCIDVQESAVAQTQARLQQALPPQAMQRISVLQQSFCELPPACEPPIAERSVALVAYNLGFLPGSDKSVCSTVQDTLDSLNKASKLVKLGGAISVTCYPGHEEGAAEVAAVKEWGAGLATREWRVFEHSRLNSPEGVPLLVVAYKV 199
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BLAST of mRNA_H-elongata_contig4747.11870.1 vs. uniprot
Match: A0A7W0JF15_9BACT (Class I SAM-dependent methyltransferase n=1 Tax=Parachlamydiaceae bacterium TaxID=2052176 RepID=A0A7W0JF15_9BACT)

HSP 1 Score: 158 bits (399), Expect = 2.970e-42
Identity = 87/186 (46.77%), Postives = 112/186 (60.22%), Query Frame = 1 
Query:  739 HSHLSHLLWRQVAGPGDTVVDCTAGNGHDTLELAKIVALNDGVGKLYAMDVQDRALEATLARLESELGRMATKRSTLVKG--NFCQLPAELGACSVQLIVYNLGWLPGGDKSITTVLEDTLESIDSAKRLVKSGGMISIMLYQGHPEGKRETEAVLEYAAGLPHNRWRVFVHDRVNRTGSPVLLTI 1290
            H  L+H  W+Q    GD+ +D T GNGHDTLEL K+ AL++  G ++A D+Q  ALE T  RL   L      R TL+K   +   LP E     ++LIVYNLG+LPG DK+ TT ++ TL S+ SA  L+  GG+ISI  Y GHPEG  E EA+LE+AA LP   W    H  +NR  +P LL I
Sbjct:   11 HLQLAHTNWQQYLSIGDSAIDATCGNGHDTLELCKL-ALSNTNGHIFAFDIQAAALETTALRLRENLSPTIFNRVTLLKKCHSDLTLPFEFEE-PIKLIVYNLGYLPGADKAQTTCVQSTLRSLKSATTLLAPGGLISITCYPGHPEGALEEEALLEFAAKLPRETWNCCHHRWINRQRAPSLLLI 194
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BLAST of mRNA_H-elongata_contig4747.11870.1 vs. uniprot
Match: A0A5C7WT25_9PROT (Methyltransferase domain-containing protein n=1 Tax=Nitrosomonas sp. TaxID=42353 RepID=A0A5C7WT25_9PROT)

HSP 1 Score: 157 bits (398), Expect = 3.690e-42
Identity = 82/189 (43.39%), Postives = 116/189 (61.38%), Query Frame = 1 
Query:  736 SHSHLSHLLWRQVAGPGDTVVDCTAGNGHDTLELAKIVALNDGVGKLYAMDVQDRALEATLARLESELGRMATKRSTLVKGNFCQLPAELGACSVQLIVYNLGWLPGGDKSITTVLEDTLESIDSAKRLVKSGGMISIMLYQGHPEGKRETEAVLEYAAGLPHNRWRVFVHDRVNRT-GSPVLLTIYKL 1299
            SH  L+H  W+Q+   GDTV+D T GNGHDTL LA++V ++D  G +Y +D+Q  A++ +   L  EL     +R  L++      P  + A SV+LIVYNLG+LPGG+KS+TT +E TL+S+++A +L+  GG +SI LY GHPEG  E   VL     L  + W    H  +NR   +P LL + KL
Sbjct:    9 SHLDLAHTYWKQLVSIGDTVIDATCGNGHDTLMLARLV-IDDSAGDVYGLDIQSTAIDNSRQLLHQELPTHHLQRIHLLQQCHSTFPDMITAASVKLIVYNLGYLPGGNKSLTTRVETTLQSLNAAVKLLSPGGCLSITLYPGHPEGAIEESQVLPLIRSLSSSEWSCCHHQWINRPISAPSLLLVQKL 196
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BLAST of mRNA_H-elongata_contig4747.11870.1 vs. uniprot
Match: A0A7W1U209_9BACT (Methyltransferase domain-containing protein n=1 Tax=Parachlamydiaceae bacterium TaxID=2052176 RepID=A0A7W1U209_9BACT)

HSP 1 Score: 156 bits (394), Expect = 1.220e-41
Identity = 80/186 (43.01%), Postives = 113/186 (60.75%), Query Frame = 1 
Query:  739 HSHLSHLLWRQVAGPGDTVVDCTAGNGHDTLELAKIVALNDGVGKLYAMDVQDRALEATLARLESELGRMATKRSTLVKGNFCQLPAELGACSVQLIVYNLGWLPGGDKSITTVLEDTLESIDSAKRLVKSGGMISIMLYQGHPEGKRETEAVLEYAAGLPHNRWRVFVHDRVNRTGSPVLLTIYK 1296
            H  ++H LW +   PGDTV+D T GNG DT  LAK+ ALN   G L+A+D+Q +A+  T   LE EL +    R T ++      P  +   SV+LI+YNLG+LPG +K++TT  E TL+S+  A++L+   G+I +  Y GH EGK+E  A+L+Y   LP   W+V     VNR G+P LL + K
Sbjct:    7 HLDMAHSLWHESVQPGDTVIDATCGNGQDTRILAKL-ALNAHQGTLFALDIQAQAIVTTRNLLEQELPQDLFNRITFLEQCHSHFPEAVLENSVRLIIYNLGYLPGANKALTTRTETTLQSLQEAQKLLLENGIICVTCYPGHDEGKKEEAALLDYVRSLPTTEWQVSFTQWVNRVGAPSLLVLRK 191
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BLAST of mRNA_H-elongata_contig4747.11870.1 vs. uniprot
Match: A0A2K1J9B5_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1J9B5_PHYPA)

HSP 1 Score: 159 bits (403), Expect = 2.620e-41
Identity = 74/183 (40.44%), Postives = 120/183 (65.57%), Query Frame = 1 
Query:  748 LSHLLWRQVAGPGDTVVDCTAGNGHDTLELAKIVALNDGVGKLYAMDVQDRALEATLARLESELGRMATKRSTLVKGNFCQLPAELGACSVQLIVYNLGWLPGGDKSITTVLEDTLESIDSAKRLVKSGGMISIMLYQGHPEGKRETEAVLEYAAGLPHNRWRVFVHDRVNRTGSPVLLTIYK 1296
            ++H +WR+V   GDTVVD T GNGHDTL L K+V  ++ +G +YA DVQ+ AL  +   L+  L  +  KR  L++    QL   +G   ++L+ +NLG+LPGGD ++ T ++ T++++ S+  +++SGG+IS++ Y GHP G+ E +AV+++ + LP N W    H+ VNR  SP L+ ++K
Sbjct:  147 VAHGVWRKVVRSGDTVVDATCGNGHDTLALVKMVCADNALGYVYAFDVQEDALANSSYLLDQRLDSVQRKRVKLLRLCHSQLENIVGETPIRLVTFNLGYLPGGDHNVVTNVDTTIQALQSSSNVLQSGGLISVVAYVGHPGGREEYDAVMDFGSKLPKNTWVCSQHEWVNRPLSPRLILMFK 329
[Close]
BLAST of mRNA_H-elongata_contig4747.11870.1 vs. uniprot
Match: A0A7W1GVU4_9BACT (Class I SAM-dependent methyltransferase n=1 Tax=Parachlamydiaceae bacterium TaxID=2052176 RepID=A0A7W1GVU4_9BACT)

HSP 1 Score: 154 bits (389), Expect = 7.800e-41
Identity = 79/187 (42.25%), Postives = 112/187 (59.89%), Query Frame = 1 
Query:  736 SHSHLSHLLWRQVAGPGDTVVDCTAGNGHDTLELAKIVALNDGVGKLYAMDVQDRALEATLARLESELGRMATKRSTLVKGNFCQLPAELGACSVQLIVYNLGWLPGGDKSITTVLEDTLESIDSAKRLVKSGGMISIMLYQGHPEGKRETEAVLEYAAGLPHNRWRVFVHDRVNRTGSPVLLTIYK 1296
            SH  L+H  W+++   GD+V+D T GNG DTL LA++  L +G G +YAMD+Q +AL++    L   L          + G   Q P E+   +++LIVYNLG+LPGGDK  TT +E TL+S++SAK L+  GG++ I  Y GH  G  E E ++ +AA LP+  W    H  +NR  SP LL + K
Sbjct:   10 SHLDLTHQYWKKLIQQGDSVIDATCGNGKDTLCLAQLT-LAEGKGIIYAMDIQKQALDSARHYLSMHLSPQQFLDIEFILGCHSQFPVEIKPLTIKLIVYNLGYLPGGDKKQTTQMESTLKSLESAKNLIAPGGVLCITCYPGHDAGAIEEEGLMIFAANLPNTEWSCCHHRWLNREKSPSLLLLQK 195
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BLAST of mRNA_H-elongata_contig4747.11870.1 vs. uniprot
Match: A0A212KTZ8_9CHLA (rRNA methylase YtqB n=1 Tax=Chlamydiales bacterium SCGC AG-110-M15 TaxID=1871324 RepID=A0A212KTZ8_9CHLA)

HSP 1 Score: 153 bits (387), Expect = 1.520e-40
Identity = 80/183 (43.72%), Postives = 109/183 (59.56%), Query Frame = 1 
Query:  748 LSHLLWRQVAGPGDTVVDCTAGNGHDTLELAKIVALNDGVGKLYAMDVQDRALEATLARLESELGRMATKRSTLVKGNFCQLPAELGACSVQLIVYNLGWLPGGDKSITTVLEDTLESIDSAKRLVKSGGMISIMLYQGHPEGKRETEAVLEYAAGLPHNRWRVFVHDRVNRTGSPVLLTIYK 1296
            L+H  W  +  PGD V+D T GNGHDTL LA IV  N   GK+ A D+QD+A++ + +RL+  L   + ++ +  +     LP +     V+LIVYNLG+LPG DKS TT    TLES+D A +L+   G ISIM Y GHPEGK E  A++E+A  L    W    H ++N   +P L+ I K
Sbjct:   15 LAHSYWESLLSPGDCVLDLTCGNGHDTLFLANIVLKNQK-GKIIAYDIQDQAIQQSKSRLKEILDAKSMQQISFYQKCHSLLPKKEELPEVKLIVYNLGYLPGADKSQTTKTRSTLESLDKATQLISPAGAISIMCYPGHPEGKLEESAIIEWAQKLNVQEWHCCHHQQINGNKAPSLMLIQK 196
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig4747.11870.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LAV3_ECTSI3.750e-10866.54Methylase-related n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5JPN0_9PHAE2.480e-10464.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0G4GWR6_VITBC1.920e-4644.16Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A836C882_9STRA4.820e-4642.93Putative rRNA methylase-domain-containing protein ... [more]
A0A7W0JF15_9BACT2.970e-4246.77Class I SAM-dependent methyltransferase n=1 Tax=Pa... [more]
A0A5C7WT25_9PROT3.690e-4243.39Methyltransferase domain-containing protein n=1 Ta... [more]
A0A7W1U209_9BACT1.220e-4143.01Methyltransferase domain-containing protein n=1 Ta... [more]
A0A2K1J9B5_PHYPA2.620e-4140.44Uncharacterized protein n=2 Tax=Physcomitrium pate... [more]
A0A7W1GVU4_9BACT7.800e-4142.25Class I SAM-dependent methyltransferase n=1 Tax=Pa... [more]
A0A212KTZ8_9CHLA1.520e-4043.72rRNA methylase YtqB n=1 Tax=Chlamydiales bacterium... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig4747contigH-elongata_contig4747:7028..10831 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score339.0
Seed ortholog evalue3.3e-90
Seed eggNOG ortholog2880.D8LAV3
EggNOG free text desc.Putative rRNA methylase
EggNOG OGs2QQ3B@2759,COG0500@1
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionmethylase-related
Ec32 orthologEc-27_006280.1
Exons6
Model size1417
Cds size1302
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930784.0360308-CDS-H-elongata_contig4747:7027..74651622930784.0360308-CDS-H-elongata_contig4747:7027..7465Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4747 7028..7465 +
1691679568.67941-CDS-H-elongata_contig4747:7027..74651691679568.67941-CDS-H-elongata_contig4747:7027..7465Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4747 7028..7465 +
1622930784.0504615-CDS-H-elongata_contig4747:7787..81131622930784.0504615-CDS-H-elongata_contig4747:7787..8113Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4747 7788..8113 +
1691679568.6900015-CDS-H-elongata_contig4747:7787..81131691679568.6900015-CDS-H-elongata_contig4747:7787..8113Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4747 7788..8113 +
1622930784.067162-CDS-H-elongata_contig4747:8485..86151622930784.067162-CDS-H-elongata_contig4747:8485..8615Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4747 8486..8615 +
1691679568.7009094-CDS-H-elongata_contig4747:8485..86151691679568.7009094-CDS-H-elongata_contig4747:8485..8615Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4747 8486..8615 +
1622930784.080699-CDS-H-elongata_contig4747:9334..94711622930784.080699-CDS-H-elongata_contig4747:9334..9471Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4747 9335..9471 +
1691679568.7127814-CDS-H-elongata_contig4747:9334..94711691679568.7127814-CDS-H-elongata_contig4747:9334..9471Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4747 9335..9471 +
1622930784.097048-CDS-H-elongata_contig4747:10020..101621622930784.097048-CDS-H-elongata_contig4747:10020..10162Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4747 10021..10162 +
1691679568.723765-CDS-H-elongata_contig4747:10020..101621691679568.723765-CDS-H-elongata_contig4747:10020..10162Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4747 10021..10162 +
1622930784.1112201-CDS-H-elongata_contig4747:10587..107161622930784.1112201-CDS-H-elongata_contig4747:10587..10716Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4747 10588..10716 +
1691679568.7319002-CDS-H-elongata_contig4747:10587..107161691679568.7319002-CDS-H-elongata_contig4747:10587..10716Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4747 10588..10716 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930784.126354-UTR-H-elongata_contig4747:10716..108311622930784.126354-UTR-H-elongata_contig4747:10716..10831Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4747 10717..10831 +
1691679568.7411342-UTR-H-elongata_contig4747:10716..108311691679568.7411342-UTR-H-elongata_contig4747:10716..10831Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4747 10717..10831 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig4747.11870.1prot_H-elongata_contig4747.11870.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig4747 7028..10716 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig4747.11870.1

>prot_H-elongata_contig4747.11870.1 ID=prot_H-elongata_contig4747.11870.1|Name=mRNA_H-elongata_contig4747.11870.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=434bp
MAALAYPARAFFPASLSKLNRHTATPRKSAGCPTLATARRCYSTCSRGSW
LSLSATDQTEDATRAAEDAAKAAVLAGVKVLNQVIADVGSNKVDVDKADV
VRTMANAARATAQSALASLESKIERASLAAEEEGAGDTTDVFVPREDVVG
SPGRIVVEVALSSTTARDAARAAQAALQRQDSAAAELGLSAKDGLGTASV
ATSDVSKTGATHGGVRVDAPDDEGEEDLMGKEPDSARTTRNSPAASHSHL
SHLLWRQVAGPGDTVVDCTAGNGHDTLELAKIVALNDGVGKLYAMDVQDR
ALEATLARLESELGRMATKRSTLVKGNFCQLPAELGACSVQLIVYNLGWL
PGGDKSITTVLEDTLESIDSAKRLVKSGGMISIMLYQGHPEGKRETEAVL
EYAAGLPHNRWRVFVHDRVNRTGSPVLLTIYKL*
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mRNA from alignment at H-elongata_contig4747:7028..10831+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig4747.11870.1 ID=mRNA_H-elongata_contig4747.11870.1|Name=mRNA_H-elongata_contig4747.11870.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3804bp|location=Sequence derived from alignment at H-elongata_contig4747:7028..10831+ (Himanthalia elongata Himel1 dioecious)
ATGGCCGCCCTGGCTTACCCGGCGCGCGCATTTTTTCCGGCAAGCCTCTC
CAAATTGAATCGACACACCGCCACCCCGCGTAAATCTGCCGGGTGTCCGA
CCCTAGCCACCGCTCGCCGCTGCTACTCGACTTGCTCGAGGGGATCGTGG
CTATCTCTTTCCGCCACCGATCAGACGGAAGACGCGACCAGGGCGGCCGA
AGATGCTGCCAAGGCCGCGGTTCTTGCGGGGGTTAAAGTGTTGAATCAAG
TCATCGCTGACGTCGGCAGTAATAAGGTGGACGTCGATAAAGCGGACGTC
GTTCGGACGATGGCTAATGCTGCGCGCGCCACCGCCCAAAGCGCTCTGGC
ATCGCTGGAATCGAAGATAGAGAGGGCTAGTCTGGCAGCAGAAGAGGAGG
GGGCCGGGGATACCACGGACGTTTTCGTGCCGAGGGAGGCAAGCTCTTGA
AAAACGTTTCGGTTGAATGTGGTCCTCTTGTGAGTGATCGCGCGATGTTG
TTTTCCCGCCAATGTCAACGGTGCGCCGCAATCGTACACCCCCACGATCG
CCGTATATTTTCCCACCTTATGTGCGCATGTTATACTTTCCTGCCGCCGA
CCCGCGGTACGTGGATGAAAACACCGTTGTGCACATAAAACGTATGCCAC
TTTATGTTGCCTAGTCGTTATCAAGCCAGTAGCGTTAATCTCAAAACGAC
CTGGGTACACCCGCTCTCTTTCATTACCCCCGTCCGGCGTTGACCCTTAT
GACCGCTCAGGATGTAGTTGGCTCTCCTGGGCGTATCGTAGTGGAAGTGG
CCTTGTCGTCAACAACCGCGCGCGACGCGGCAAGGGCGGCGCAGGCTGCC
CTCCAGCGCCAGGACTCAGCGGCCGCGGAGCTGGGCCTTTCCGCAAAAGA
TGGGCTTGGGACTGCTTCTGTCGCGACGTCCGATGTATCGAAAACGGGAG
CAACTCATGGTGGGGTCCGCGTCGATGCGCCCGACGACGAGGGAGAGGAA
GACCTGATGGGAAAGGAGCCAGACTCTGCGCGCACGACTCGGAACAGCCC
CGCCGCTTCGCACAGCCATCTTTCTCATCTTCTTTGGTGAGCCTTTGCGG
CAGGAGCGTTTTCCGTGCGCTACGACCCTTCGTTCGTCGTGCAACCAAAG
CCCCCCATCTCCCTTCCCCTCCCCGGCCTCCTCAAGAAATGCTACATGAT
TAATATATCATTTGGTTTCGCGTGATTAGCATTCAGCATGTGCTCGTTGT
TATTTTTTCATCGAGATTTTTCTCATTTATTTATATTTTACACTCGTGAA
GCTTCGAAGGGGAAAAGCATCCGCGCAAATTATGGTTTATGTTGCCCAAA
CGATTTTCACAGACTGTCAAATATACACACACAAACACTAACAGAGTCTA
ATCGTGTGTGCTCTATCCATTTGATCGTCGCCCCTTCTGTTGCTGTTATT
TCAATCAGGAGGCAAGTCGCAGGCCCGGGCGACACGGTGGTGGATTGCAC
TGCCGGTAACGGCCACGACACCCTAGAGCTGGCCAAGATTGTGGCGCTGA
ATGACGGCGTCGGGAAACTTTACGCCATGGATGTTCAGGCGAGTGAGTTA
GTGGCTGGCGGTGTGTGCCAGACCCCGGCGAGATCAGAAATATCTTCGCG
ATCGGAGTAGCGAGCTCTCGGCCCGGGAAGCTCACCCCGAGCTGAAGACA
TTATTGTGCGCCAGAGAGCAGCATCGAGGGCGGGTTAGCCTCATTGGCTC
CCTTCCTCTACTGGTGTGTATATAATACTATTAATAGTCGTAATAGTAGT
ACCGTGCGTGTGCAGGCGGGTTCCCACGTTCTCCATTACCACGTGATTAT
GACACTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCGGAGTTATT
TCCTTACAGGCAAGTAGGCATAAAACAGCGAGGTATCCGCACACCCGTAT
TTGTCACGCCTTGAGCCGCATACTCTCATGTCTTGTCATTTCGACGTATC
TTTAGGCTCGACGCCGAACATGTCTTGTCATTTCTCCGCATGCCAGGTAC
GTGAAATATTTTCGCGGCGCGATAATTATCCCCCGGACACAATCGACAAA
AATGTAGAACGCAACCAGCCTAGCAGATTAGCGCCACGCAGATCGCAGGG
GCGTAGGAGGGGGGTTAAGCGCTTCCCCTCTTTGGGGAATTTTACTGACG
AAAAATGCATCAAGCCTCAAACGAGTTTCGCATTCCTCCAGGGTGTTGTT
GCCTTGAAACTTGGGGGCTGTTGTTTTTTTCGCTAAGTTTTCGTGGTCCA
TCCACAGGATCGGGCGCTTGAGGCCACGCTCGCGAGGTTGGAATCCGAGC
TAGGCCGCATGGCTACCAAGCGCTCGACCCTCGTGAAGGGGAACTTTTGC
CAGCTTCCGGCGGAGCTGGGAGCCTGCTCTGTCCAGCTCATCGTGTGAGT
GGAAAGAAAGATATATATATAGAGAGAGGTGGCCGCCCTCGGTAAAAGTG
ATACGGCGTCACCACTGGCGCACGCTTGTGGAAAGTCCGCGTTTTCCTCC
GCGTTTAACGCTGCCGCTACCATCATACCCTCATTATCGCTTCGGGCCAG
TTTCGTTGGTCATCGAACGCTTCAATTTATCTCTTCTGCGTGAGGGAAAA
ATTCAAAAGAGAGATACGTACATTTTCATATTTATAACAGAGCCCATTTT
TTGGGGTATCTAGTGGTGTTATAGTACAGGATAGTATAGGATACCGTTTT
TTCGTAGACACATCCGTGAGGTAGACACACCGGTTCTCGTCGTTCGCATG
CGACCACGCGAAAATGATCGTGCGACCCTTGCAGCGCCAAAATATCAGTA
AGCTCTTTTTTTTCTTCTGGATACGTTTTTAGCGCTGTATATCGCTCCAG
GACACGGGGAAGTTCTAAACTGCCGCATGGCGTACCATCTCCACGTCGCT
CTCGTGGTATTAATTTATGTCTCTCTTTTAACTGACCCATTAGGTATAAC
TTGGGGTGGTTGCCGGGAGGAGACAAGTCCATCACGACTGTGCTCGAGGA
CACCTTGGAAAGCATCGACTCGGCGAAGCGTCTGGTGAAAAGCGGAGGCA
TGATCAGCATCATGTTGTATCAAGGCCACCCAGAGGTATTTGTTGTATTT
GTATGTTTTATTGGACAGCAACGTGTTCCGCCAAGGAGAAAACCAACGCC
TTCTTTAGGCGCGAATCCGTAAAATGTGAACACTTGCACTTTTTATTGGC
CACGCCGATCATCACCACCAATGGACCGCGTTTCCTGCCTAGCACCGTCT
GTAGGATTGATTTGATTGTGTTACGCCCGTCGTGTTTGTTCAAAGCCCAC
AATATAGCTCTTATTCATCGATGTCCTCCCACGTCGCCAGGCCCGCGTTT
TCATTTTTGAGCTACAGCTAGAGACTATTGGAGGGGGGATGAAGAGAAGG
CTAGATTGTCAAACACGCTCGAACGACATTCAGGGTGACGGCAGGTTTCA
TTCCGTCATGTACCATTATGTCCCATTATATCCCATTACTTGGTGCACGG
CGTTCCTCAGGGGAAGCGGGAAACGGAAGCCGTGCTGGAGTATGCGGCAG
GCCTCCCCCACAACCGTTGGCGCGTATTCGTTCACGACAGGGTCAATCGC
ACGGGATCGCCCGTGCTTCTCACGATTTACAAGCTATGACATCTCTTCGT
GCTCCCGAGAAAGTTGGTAATGAGGAATCCACTCGGTCGTTTCGTACCTT
GGGGATGCATTGGAGAACAGTAACCGGGAGTTAGACAGGGTGGGTGGGGG
GGGC
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Coding sequence (CDS) from alignment at H-elongata_contig4747:7028..10831+

>mRNA_H-elongata_contig4747.11870.1 ID=mRNA_H-elongata_contig4747.11870.1|Name=mRNA_H-elongata_contig4747.11870.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2604bp|location=Sequence derived from alignment at H-elongata_contig4747:7028..10831+ (Himanthalia elongata Himel1 dioecious)
ATGGCCGCCCTGGCTTACCCGGCGCGCGCATTTTTTCCGGCAAGCCTCTC
CAAATTGAATCGACACACCGCCACCCCGCGTAAATCTGCCGGGTGTCCGA
CCCTAGCCACCGCTCGCCGCTGCTACTCGACTTGCTCGAGGGGATCGTGG
CTATCTCTTTCCGCCACCGATCAGACGGAAGACGCGACCAGGGCGGCCGA
AGATGCTGCCAAGGCCGCGGTTCTTGCGGGGGTTAAAGTGTTGAATCAAG
TCATCGCTGACGTCGGCAGTAATAAGGTGGACGTCGATAAAGCGGACGTC
GTTCGGACGATGGCTAATGCTGCGCGCGCCACCGCCCAAAGCGCTCTGGC
ATCGCTGGAATCGAAGATAGAGAGGGCTAGTCTGGCAGCAGAAGAGGAGG
GGGCCGGGGATACCACGGACGTTTTCGTGCCGAGGGAGATGGCCGCCCTG
GCTTACCCGGCGCGCGCATTTTTTCCGGCAAGCCTCTCCAAATTGAATCG
ACACACCGCCACCCCGCGTAAATCTGCCGGGTGTCCGACCCTAGCCACCG
CTCGCCGCTGCTACTCGACTTGCTCGAGGGGATCGTGGCTATCTCTTTCC
GCCACCGATCAGACGGAAGACGCGACCAGGGCGGCCGAAGATGCTGCCAA
GGCCGCGGTTCTTGCGGGGGTTAAAGTGTTGAATCAAGTCATCGCTGACG
TCGGCAGTAATAAGGTGGACGTCGATAAAGCGGACGTCGTTCGGACGATG
GCTAATGCTGCGCGCGCCACCGCCCAAAGCGCTCTGGCATCGCTGGAATC
GAAGATAGAGAGGGCTAGTCTGGCAGCAGAAGAGGAGGGGGCCGGGGATA
CCACGGACGTTTTCGTGCCGAGGGAGGATGTAGTTGGCTCTCCTGGGCGT
ATCGTAGTGGAAGTGGCCTTGTCGTCAACAACCGCGCGCGACGCGGCAAG
GGCGGCGCAGGCTGCCCTCCAGCGCCAGGACTCAGCGGCCGCGGAGCTGG
GCCTTTCCGCAAAAGATGGGCTTGGGACTGCTTCTGTCGCGACGTCCGAT
GTATCGAAAACGGGAGCAACTCATGGTGGGGTCCGCGTCGATGCGCCCGA
CGACGAGGGAGAGGAAGACCTGATGGGAAAGGAGCCAGACTCTGCGCGCA
CGACTCGGAACAGCCCCGCCGCTTCGCACAGCCATCTTTCTCATCTTCTT
TGGATGTAGTTGGCTCTCCTGGGCGTATCGTAGTGGAAGTGGCCTTGTCG
TCAACAACCGCGCGCGACGCGGCAAGGGCGGCGCAGGCTGCCCTCCAGCG
CCAGGACTCAGCGGCCGCGGAGCTGGGCCTTTCCGCAAAAGATGGGCTTG
GGACTGCTTCTGTCGCGACGTCCGATGTATCGAAAACGGGAGCAACTCAT
GGTGGGGTCCGCGTCGATGCGCCCGACGACGAGGGAGAGGAAGACCTGAT
GGGAAAGGAGCCAGACTCTGCGCGCACGACTCGGAACAGCCCCGCCGCTT
CGCACAGCCATCTTTCTCATCTTCTTTGGAGGCAAGTCGCAGGCCCGGGC
GACACGGTGGTGGATTGCACTGCCGGTAACGGCCACGACACCCTAGAGCT
GGCCAAGATTGTGGCGCTGAATGACGGCGTCGGGAAACTTTACGCCATGG
ATGTTCAGGAGGCAAGTCGCAGGCCCGGGCGACACGGTGGTGGATTGCAC
TGCCGGTAACGGCCACGACACCCTAGAGCTGGCCAAGATTGTGGCGCTGA
ATGACGGCGTCGGGAAACTTTACGCCATGGATGTTCAGGATCGGGCGCTT
GAGGCCACGCTCGCGAGGTTGGAATCCGAGCTAGGCCGCATGGCTACCAA
GCGCTCGACCCTCGTGAAGGGGAACTTTTGCCAGCTTCCGGCGGAGCTGG
GAGCCTGCTCTGTCCAGCTCATCGTGATCGGGCGCTTGAGGCCACGCTCG
CGAGGTTGGAATCCGAGCTAGGCCGCATGGCTACCAAGCGCTCGACCCTC
GTGAAGGGGAACTTTTGCCAGCTTCCGGCGGAGCTGGGAGCCTGCTCTGT
CCAGCTCATCGTGTATAACTTGGGGTGGTTGCCGGGAGGAGACAAGTCCA
TCACGACTGTGCTCGAGGACACCTTGGAAAGCATCGACTCGGCGAAGCGT
CTGGTGAAAAGCGGAGGCATGATCAGCATCATGTTGTATCAAGGCCACCC
AGAGGTATAACTTGGGGTGGTTGCCGGGAGGAGACAAGTCCATCACGACT
GTGCTCGAGGACACCTTGGAAAGCATCGACTCGGCGAAGCGTCTGGTGAA
AAGCGGAGGCATGATCAGCATCATGTTGTATCAAGGCCACCCAGAGGGGA
AGCGGGAAACGGAAGCCGTGCTGGAGTATGCGGCAGGCCTCCCCCACAAC
CGTTGGCGCGTATTCGTTCACGACAGGGTCAATCGCACGGGATCGCCCGT
GCTTCTCACGATTTACAAGCTATGAGGGAAGCGGGAAACGGAAGCCGTGC
TGGAGTATGCGGCAGGCCTCCCCCACAACCGTTGGCGCGTATTCGTTCAC
GACAGGGTCAATCGCACGGGATCGCCCGTGCTTCTCACGATTTACAAGCT
ATGA
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