mRNA_H-elongata_contig47465.11869.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig47465.11869.1
Unique NamemRNA_H-elongata_contig47465.11869.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig47465.11869.1 vs. uniprot
Match: D7FP34_ECTSI (Similar to neural cell expressed, developmentally down-regulated 4-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP34_ECTSI)

HSP 1 Score: 143 bits (360), Expect = 2.450e-37
Identity = 75/130 (57.69%), Postives = 95/130 (73.08%), Query Frame = 1 
Query:    1 AIIGSIGGVWQFVLFGFGLFFVYAEKQHPEMKMRNMRKTVLKPASFVTHRLS--NTSSKSSDQNIDVDASDEDLPPGWVKKEHKNGSFYYCNILTGAAQERSPVESTNANAVIGAPALPPDLSRLTQIFQ 384
            +IIG+IGG+WQFV+ GFGLFFV++EKQ P+ KMRN RK++ KPA F   RLS  NTSS+SS+Q++++DAS+EDLP  WVKK+  NGS YY N++TGA Q  SP    NA    G  A PP  S L +IFQ
Sbjct:  314 SIIGAIGGIWQFVVTGFGLFFVFSEKQSPDRKMRNFRKSIGKPAEFANKRLSILNTSSRSSNQDVEIDASEEDLPVEWVKKQRPNGSIYYFNVMTGAKQTASPNHLDNA----GGSAPPPSNSALGRIFQ 439
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BLAST of mRNA_H-elongata_contig47465.11869.1 vs. uniprot
Match: D8LQB8_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQB8_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 7.080e-32
Identity = 64/116 (55.17%), Postives = 87/116 (75.00%), Query Frame = 1 
Query:    1 AIIGSIGGVWQFVLFGFGLFFVYAEKQHPEMKMRNMRKTVLKPASFVTHRLSNTSSKS-SDQNIDVDASDEDLPPGWVKKEHKNGSFYYCNILTGAAQERSPVESTNANAVIGAPA 345
            AIIG+IGGVWQFV+  FGLFFV++EKQ P+ K+RN +K+V KPAS V   LS+ +S+  +  ++++DAS+EDLP GWVK++ KNG+ YY N+LTG A+E SP E+    AV   PA
Sbjct:  327 AIIGAIGGVWQFVVIAFGLFFVFSEKQLPDKKIRNFKKSVAKPASMVNRHLSSANSRDPTTPDVEIDASNEDLPIGWVKRQRKNGTTYYYNLLTGDARENSPTEAHAVVAVGVTPA 442
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BLAST of mRNA_H-elongata_contig47465.11869.1 vs. uniprot
Match: A0A6H5JSI3_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSI3_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 1.640e-30
Identity = 66/129 (51.16%), Postives = 90/129 (69.77%), Query Frame = 1 
Query:    1 AIIGSIGGVWQFVLFGFGLFFVYAEKQHPEMKMRNMRKTVLKPASFVTHRLSNTSSKSSD-QNIDVDASDEDLPPGWVKKEHKNGSFYYCNILTGAAQERSPVESTNANAVIGAPALPPDLSRLTQIFQ 384
            AIIG+IGGVWQFV+  FGLFFV++EKQ P+ K+RN +K+V KPAS V   LS+ SS+     ++++D S+EDLP GWVK++ KNG+ YY N LTG A+E SP E+    AV   PA  P+   + + F+
Sbjct:  358 AIIGAIGGVWQFVVIAFGLFFVFSEKQLPDKKIRNFKKSVAKPASMVKRHLSSASSRDPTIPDVEIDTSNEDLPIGWVKRQRKNGTTYYYNPLTGDARENSPTEAHAVVAVGVTPA--PERRSIARAFR 484
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BLAST of mRNA_H-elongata_contig47465.11869.1 vs. uniprot
Match: D7FP33_ECTSI (E3 ubiquitin-protein ligase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP33_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 9.540e-30
Identity = 62/103 (60.19%), Postives = 77/103 (74.76%), Query Frame = 1 
Query:    1 AIIGSIGGVWQFVLFGFGLFFVYAEKQHPEMKMRNMRKTVLKPASFVTHRLSNTSSKSS--DQNIDVDASDEDLPPGWVKKEHKNGSFYYCNILTGAAQERSP 303
            +IIG+IGG+WQFV+ GFGLFFVY+ KQ P+ KMRN RK+V KPAS V  RLS   S+SS  +Q+I++DAS+EDLP  WVKK+  NGS YY + LTG  Q   P
Sbjct:  320 SIIGAIGGIWQFVVTGFGLFFVYSVKQSPDRKMRNFRKSVTKPASIVNKRLSTLGSRSSISNQDIELDASEEDLPADWVKKQRANGSIYYFHPLTGKKQSTPP 422
[Close]
BLAST of mRNA_H-elongata_contig47465.11869.1 vs. uniprot
Match: A0A6H5JBE8_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE8_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 3.250e-25
Identity = 61/122 (50.00%), Postives = 82/122 (67.21%), Query Frame = 1 
Query:   31 QFVLFGFGLFFVYAEKQHPEMKMRNMRKTVLKPASFVTHRLS--NTSSKSSDQN--IDVDASDEDLPPGWVKKEHKNGSFYYCNILTGAAQERSPVESTNANAVIGAPALPPDLSRLTQIFQ 384
            +FV+ GFGLFFV++E+Q P+ + RN RK++ KPA F  +RLS  N S +SS++N  +++DAS EDLP  WVKK+  NGS YY N++TGA Q  SP    +A    G  A PP  S L +IFQ
Sbjct:  375 EFVVTGFGLFFVFSERQSPDRRFRNFRKSIRKPAEFAGNRLSSLNISFRSSNRNQDVEIDASGEDLPVEWVKKQRPNGSIYYFNVMTGAKQTASPNRLDDA----GGAAPPPSNSALRRIFQ 492
[Close]
BLAST of mRNA_H-elongata_contig47465.11869.1 vs. uniprot
Match: A0A6H5JZ12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ12_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 2.940e-22
Identity = 52/93 (55.91%), Postives = 67/93 (72.04%), Query Frame = 1 
Query:   31 QFVLFGFGLFFVYAEKQHPEMKMRNMRKTVLKPASFVTHRLSNTSSKSS--DQNIDVDASDEDLPPGWVKKEHKNGSFYYCNILTGAAQERSP 303
            +FV+ GFGLFFV++ KQ P+ KMRN RK+V KPAS V  RLS   S+SS  +Q+I++D+S+EDLP  WVKK+  NGS YY + LTG  Q   P
Sbjct:  360 EFVVTGFGLFFVFSVKQSPDRKMRNFRKSVTKPASIVNKRLSTLGSRSSTSNQDIELDSSEEDLPADWVKKQRANGSIYYFHPLTGKKQSTPP 452
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47465.11869.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FP34_ECTSI2.450e-3757.69Similar to neural cell expressed, developmentally ... [more]
D8LQB8_ECTSI7.080e-3255.17WW domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5JSI3_9PHAE1.640e-3051.16WW domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D7FP33_ECTSI9.540e-3060.19E3 ubiquitin-protein ligase, putative n=1 Tax=Ecto... [more]
A0A6H5JBE8_9PHAE3.250e-2550.00WW domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A6H5JZ12_9PHAE2.940e-2255.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig47465contigH-elongata_contig47465:1068..2173 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score123.6
Seed ortholog evalue6.5e-26
Seed eggNOG ortholog2880.D7FP33
EggNOG free text desc.ubiquitin protein ligase activity
EggNOG OGsCOG5021@1,KOG0940@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons3
Model size387
Cds size384
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig47465.11869.1prot_H-elongata_contig47465.11869.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig47465 1068..2172 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930783.953982-CDS-H-elongata_contig47465:1067..10981622930783.953982-CDS-H-elongata_contig47465:1067..1098Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47465 1068..1098 +
1691679568.6500669-CDS-H-elongata_contig47465:1067..10981691679568.6500669-CDS-H-elongata_contig47465:1067..1098Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47465 1068..1098 +
1622930783.9709187-CDS-H-elongata_contig47465:1596..17481622930783.9709187-CDS-H-elongata_contig47465:1596..1748Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47465 1597..1748 +
1691679568.6588943-CDS-H-elongata_contig47465:1596..17481691679568.6588943-CDS-H-elongata_contig47465:1596..1748Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47465 1597..1748 +
1622930783.994367-CDS-H-elongata_contig47465:1971..21721622930783.994367-CDS-H-elongata_contig47465:1971..2172Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47465 1972..2172 +
1691679568.6682847-CDS-H-elongata_contig47465:1971..21721691679568.6682847-CDS-H-elongata_contig47465:1971..2172Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47465 1972..2172 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig47465.11869.1

>prot_H-elongata_contig47465.11869.1 ID=prot_H-elongata_contig47465.11869.1|Name=mRNA_H-elongata_contig47465.11869.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=128bp
AIIGSIGGVWQFVLFGFGLFFVYAEKQHPEMKMRNMRKTVLKPASFVTHR
LSNTSSKSSDQNIDVDASDEDLPPGWVKKEHKNGSFYYCNILTGAAQERS
PVESTNANAVIGAPALPPDLSRLTQIFQ
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mRNA from alignment at H-elongata_contig47465:1068..2173+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig47465.11869.1 ID=mRNA_H-elongata_contig47465.11869.1|Name=mRNA_H-elongata_contig47465.11869.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1106bp|location=Sequence derived from alignment at H-elongata_contig47465:1068..2173+ (Himanthalia elongata Himel1 dioecious)
GCGATCATCGGTTCCATTGGAGGCGTTTGGCGTGAGTTTATCAAATTATT
TACGACTCGGGGGTCGGATAAGCCGGAAGATCGAAAAGAGCTGATCCCGG
ACGCGTGGTATCTAGGTTATGTATGTCTTTGATATACTGTAAAGGTGTTA
CATAACGTATATAACAACGCAACAAAAATGCACACTGGTATAAAATACCA
CGTCCCTCAGTTGCTTCTATTACTGTGACGTGCGCGATAAAACGTTACCC
TATGGTTTAGCTCGAAGGCACCAACGCTCAGAGGTCATGCGCTTTAGCTC
TAAGCGCAAAATAATCGTAGGAGAATGAAAACATTTTCCAGGTCTGCCAT
AGTAGTAAATAGTAGAAGCTGGTTCCTTACGCAATAGTTGCATCGCGAGG
GTGAGAAAGTAATAGCCCCACTTTTCAGTGGGCGGAAGGATATTATGTGG
CACCTTTGCTCAAGTTTTAGGTACACACACGACTAAATACGATCCGGGTT
CCGATGCCTCGAACTCTTGCTCCGAGTAGAGTTTGTCTTGTTCGGGTTTG
GACTATTCTTCGTTTACGCGGAGAAACAGCACCCAGAGATGAAGATGAGA
AACATGAGAAAGACCGTGTTGAAACCGGCGAGCTTCGTCACCCATAGGTT
ATCTAACACCAGCTCGAAGTCATCGGATCAGGTGTGTAAAGGTTCTTCAA
TTCCTTTAAACTGCCATTCGGAGTGCCGCAACCGCATGTCACGTGGATTT
CCATTAGCAGTGCAGAGACTATTGCAGTAGTACTAAATGATGCGTGATAC
TTGTCGTGCGTTTACGAGCCCCAAGAATGAAAACCAAGCCCCCAAGGTGA
CGGCAGCATCATCCATCTCTCTCACTCCGCACTGACAATGCTTGTATATA
TCAGAATATCGACGTAGACGCATCGGATGAAGATCTCCCGCCGGGGTGGG
TGAAGAAAGAGCATAAGAATGGGAGCTTCTACTACTGTAATATCCTGACC
GGCGCTGCACAAGAAAGGTCGCCGGTCGAGAGTACCAACGCGAATGCTGT
CATCGGAGCACCAGCACTTCCGCCGGATCTGAGTCGGCTAACCCAGATCT
TTCAGG
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Coding sequence (CDS) from alignment at H-elongata_contig47465:1068..2173+

>mRNA_H-elongata_contig47465.11869.1 ID=mRNA_H-elongata_contig47465.11869.1|Name=mRNA_H-elongata_contig47465.11869.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=768bp|location=Sequence derived from alignment at H-elongata_contig47465:1068..2173+ (Himanthalia elongata Himel1 dioecious)
GCGATCATCGGTTCCATTGGAGGCGTTTGGCGCGATCATCGGTTCCATTG
GAGGCGTTTGGCAGTTTGTCTTGTTCGGGTTTGGACTATTCTTCGTTTAC
GCGGAGAAACAGCACCCAGAGATGAAGATGAGAAACATGAGAAAGACCGT
GTTGAAACCGGCGAGCTTCGTCACCCATAGGTTATCTAACACCAGCTCGA
AGTCATCGGATCAGAGTTTGTCTTGTTCGGGTTTGGACTATTCTTCGTTT
ACGCGGAGAAACAGCACCCAGAGATGAAGATGAGAAACATGAGAAAGACC
GTGTTGAAACCGGCGAGCTTCGTCACCCATAGGTTATCTAACACCAGCTC
GAAGTCATCGGATCAGAATATCGACGTAGACGCATCGGATGAAGATCTCC
CGCCGGGGTGGGTGAAGAAAGAGCATAAGAATGGGAGCTTCTACTACTGT
AATATCCTGACCGGCGCTGCACAAGAAAGGTCGCCGGTCGAGAGTACCAA
CGCGAATGCTGTCATCGGAGCACCAGCACTTCCGCCGGATCTGAGTCGGC
TAACCCAGATCTTTCAGAATATCGACGTAGACGCATCGGATGAAGATCTC
CCGCCGGGGTGGGTGAAGAAAGAGCATAAGAATGGGAGCTTCTACTACTG
TAATATCCTGACCGGCGCTGCACAAGAAAGGTCGCCGGTCGAGAGTACCA
ACGCGAATGCTGTCATCGGAGCACCAGCACTTCCGCCGGATCTGAGTCGG
CTAACCCAGATCTTTCAG
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