mRNA_H-elongata_contig47442.11865.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig47442.11865.1 vs. uniprot
Match: D7G8W8_ECTSI (Cleavage and polyadenylation specificity factor CG10110-PA n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8W8_ECTSI) HSP 1 Score: 235 bits (600), Expect = 2.730e-68 Identity = 129/199 (64.82%), Postives = 143/199 (71.86%), Query Frame = 1
Query: 1 MTSTAIYTCYRQLHPPTGVDHAVFGSVISPGSRDLVVAKASILELYRIHRDK---------LLPSSPRSGGEWLKNDAGAGFFLELVGTFPIAGNITALAVIPVGISTATAPQQQDILVVSFDLAKTALVAYDPTLGRLSTLSIHNFDPGAMGPGSGGVEFSYGLASAQRDRPATISSCDPAGRCVSAVVAGCLLVVLP 570
MTSTAIYTCYRQLHPPTGVDHAVFGSV + GSRDLVVAKAS LELYR+HRD +G++LEL GTFP+AGNITALAVIP DILVVSF +AK ALVAYD LGRL T+SIHNFD GA+GPG+GGVE YGLA+A +DRP TISS DPAGRC++AVVAGC LVVLP
Sbjct: 1 MTSTAIYTCYRQLHPPTGVDHAVFGSVTAAGSRDLVVAKASTLELYRVHRDDHSXXXXXXXXXXXXXXXXXXXXXXXXASGYYLELAGTFPLAGNITALAVIP------------DILVVSFGVAKMALVAYDSVLGRLETISIHNFDAGAIGPGAGGVESGYGLAAALKDRPRTISSSDPAGRCLAAVVAGCQLVVLP 187
BLAST of mRNA_H-elongata_contig47442.11865.1 vs. uniprot
Match: A0A7K8XUE5_9PICI (CPSF1 factor (Fragment) n=2 Tax=Piciformes TaxID=9219 RepID=A0A7K8XUE5_9PICI) HSP 1 Score: 89.4 bits (220), Expect = 2.620e-17 Identity = 65/185 (35.14%), Postives = 92/185 (49.73%), Query Frame = 1
Query: 16 IYTCYRQLHPPTGVDHAVFGSVISPGSRDLVVAKASILELYRIHRDKLLPSSPRSGGEWLKNDAGAGFFLELVGTFPIAGNITALAVIPVGISTATAPQQQDILVVSFDLAKTALVAYDPTLGRLSTLSIHNFDPGAMGPGSGGVEFSYGLASAQRDRPATISSCDPAGRCVSAVVAGCLLVVLP 570
+Y Y+Q HPPTG++ A+F SP ++LVVA S L +YR++ D S P G+ K LELV +F GN+ ++A S A ++D L++SF AK ++V YDP L TLS+H F+ + G F + Q DP GRC ++ G LVVLP
Sbjct: 1 MYAVYKQAHPPTGLEFALFCHFFSPAEKNLVVAGTSQLYVYRLNHDSPTLSHPILEGKGHKEK------LELVASFSFFGNVMSMA------SVQLAGAKRDALLLSFKDAKLSVVEYDPATHDLKTLSLHYFEEPELRDG-----FVQNVHIPQ-------VRVDPDGRCAVMLIYGTRLVVLP 161
BLAST of mRNA_H-elongata_contig47442.11865.1 vs. uniprot
Match: A0A087SYC4_STEMI (Cleavage and polyadenylation specificity factor subunit 1 (Fragment) n=1 Tax=Stegodyphus mimosarum TaxID=407821 RepID=A0A087SYC4_STEMI) HSP 1 Score: 85.9 bits (211), Expect = 3.330e-17 Identity = 60/185 (32.43%), Postives = 94/185 (50.81%), Query Frame = 1
Query: 16 IYTCYRQLHPPTGVDHAVFGSVISPGSRDLVVAKASILELYRIHRDKLLPSSPRSGGEWLKNDAGAGFFLELVGTFPIAGNITALAVIPVGISTATAPQQQDILVVSFDLAKTALVAYDPTLGRLSTLSIHNFDPGAMGPGSGGVEFSYGLASAQRDRPATISSCDPAGRCVSAVVAGCLLVVLP 570
IY+ Y+Q+HPPT V+H ++ + + ++LV+A A++L +YR+ + +P+ G LK LE V FP+ GN+ ++ S A +D L++SF AK +LV YDP+ L TLS+H F+ M G+ F + DP GRC + VV +V+LP
Sbjct: 5 IYSFYKQIHPPTAVEHCLYCNFYNFSEQNLVIAGATVLRIYRLTPEAEIPAI---GEPKLK--------LECVQVFPLFGNVMSMQ------SVRLAGSSRDALLLSFKEAKLSLVEYDPSTHDLKTLSLHYFEEEDMKAGANHHPFI------------PVVRADPDGRCAAMVVYERNIVILP 160
BLAST of mRNA_H-elongata_contig47442.11865.1 vs. uniprot
Match: A0A7K9T8I3_9AVES (CPSF1 factor (Fragment) n=1 Tax=Galbula dea TaxID=1109041 RepID=A0A7K9T8I3_9AVES) HSP 1 Score: 86.7 bits (213), Expect = 2.240e-16 Identity = 65/187 (34.76%), Postives = 94/187 (50.27%), Query Frame = 1
Query: 16 IYTCYRQLHPPTGVDHAVFGSVISPGSRDLVVAKASILELYRIHRDKLLPSSPRSGGEWLKNDAGAGFF--LELVGTFPIAGNITALAVIPVGISTATAPQQQDILVVSFDLAKTALVAYDPTLGRLSTLSIHNFDPGAMGPGSGGVEFSYGLASAQRDRPATISSCDPAGRCVSAVVAGCLLVVLP 570
+Y Y+Q HPPTG++ A+F S R+LVVA S L++YR++ D +G + +N G G LEL+ TF GN+ ++A S A ++D L++SF AK ++V YDP L TLS+H F+ + G F + Q DP GRC ++ G LVVLP
Sbjct: 1 MYAVYKQAHPPTGLEFAIFCHFFSSTERNLVVAGTSQLQVYRLNHDC------ETGAKGDRNGEGKGHREKLELLATFSFFGNVMSMA------SVQLAGAKRDALLLSFKDAKLSVVEYDPGTHDLKTLSLHYFEEPELRDG-----FVQNVHIPQ-------VRVDPDGRCAVMLIYGTRLVVLP 163
BLAST of mRNA_H-elongata_contig47442.11865.1 vs. uniprot
Match: A0A7L1N947_RHICY (CPSF1 factor (Fragment) n=1 Tax=Rhinopomastus cyanomelas TaxID=113115 RepID=A0A7L1N947_RHICY) HSP 1 Score: 86.3 bits (212), Expect = 3.120e-16 Identity = 65/185 (35.14%), Postives = 90/185 (48.65%), Query Frame = 1
Query: 16 IYTCYRQLHPPTGVDHAVFGSVISPGSRDLVVAKASILELYRIHRDKLLPSSPRSGGEWLKNDAGAGFFLELVGTFPIAGNITALAVIPVGISTATAPQQQDILVVSFDLAKTALVAYDPTLGRLSTLSIHNFDPGAMGPGSGGVEFSYGLASAQRDRPATISSCDPAGRCVSAVVAGCLLVVLP 570
+Y Y+Q HPPTG++ A+F S R+LVVA S L++YR++ D + GE G LELV F GN+ ++A S A ++D L++SF AK ++V YDP L TLS+H F+ E G Q P + DP GRC ++ G LVVLP
Sbjct: 1 MYAVYKQAHPPTGLEFAIFCHFFSTSERNLVVAGTSQLQVYRLNHDCETSAKGDRNGE----GKGHKEKLELVAAFSFFGNVMSMA------SVQLAGAKRDALLLSFKDAKLSVVEYDPGTHDLKTLSLHYFEE---------PELRDGFV--QNVHPPRVRV-DPDGRCAVMLIYGTRLVVLP 163
BLAST of mRNA_H-elongata_contig47442.11865.1 vs. uniprot
Match: A0A852IK65_9PICI (CPSF1 factor (Fragment) n=1 Tax=Tricholaema leucomelas TaxID=240729 RepID=A0A852IK65_9PICI) HSP 1 Score: 86.3 bits (212), Expect = 3.230e-16 Identity = 63/185 (34.05%), Postives = 91/185 (49.19%), Query Frame = 1
Query: 16 IYTCYRQLHPPTGVDHAVFGSVISPGSRDLVVAKASILELYRIHRDKLLPSSPRSGGEWLKNDAGAGFFLELVGTFPIAGNITALAVIPVGISTATAPQQQDILVVSFDLAKTALVAYDPTLGRLSTLSIHNFDPGAMGPGSGGVEFSYGLASAQRDRPATISSCDPAGRCVSAVVAGCLLVVLP 570
+Y Y+Q HPPTG++ A++ SP ++LVVA S L +YR++ D P G+ K LELV +F GN+ ++A S A ++D L++SF AK ++V YDP L TLS+H F+ + G F + Q DP GRC ++ G LVVLP
Sbjct: 1 MYAVYKQAHPPTGLEFALYCHFFSPAEKNLVVAGTSQLYVYRLNHDSPTLPHPVLEGKGHKEK------LELVASFSFFGNVMSMA------SVQLAGAKRDALLLSFKDAKLSVVEYDPATHDLKTLSLHYFEEPELRDG-----FVQNVHIPQ-------VRVDPDGRCAVMLIYGTRLVVLP 161
BLAST of mRNA_H-elongata_contig47442.11865.1 vs. uniprot
Match: UPI0015A8335D (cleavage and polyadenylation specificity factor subunit 1-like n=1 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015A8335D) HSP 1 Score: 79.0 bits (193), Expect = 1.480e-15 Identity = 47/134 (35.07%), Postives = 76/134 (56.72%), Query Frame = 1
Query: 16 IYTCYRQLHPPTGVDHAVFGSVISPGSRDLVVAKASILELYRIHRDKLLPSSPRSGGEWLKNDAGAGFFLELVGTFPIAGNITALAVIPVGISTATAPQQQDILVVSFDLAKTALVAYDPTLGRLSTLSIHNFD 417
IY+ Y+Q+HPPT V+H ++ + + ++LV+A A++L +YR+ + +P+ G LK LE V FP+ GN+ ++ S A +D L++SF AK +LV YDP+ L TLS+H F+
Sbjct: 5 IYSFYKQIHPPTAVEHCLYCNFYNFSEQNLVIAGATVLRIYRLTPEAEIPAI---GEPKLK--------LECVQVFPLFGNVMSMQ------SVRLAGSSRDALLLSFKEAKLSLVEYDPSTHDLKTLSLHYFE 121
BLAST of mRNA_H-elongata_contig47442.11865.1 vs. uniprot
Match: A0A7L1GMJ6_9PICI (CPSF1 factor (Fragment) n=1 Tax=Indicator maculatus TaxID=545262 RepID=A0A7L1GMJ6_9PICI) HSP 1 Score: 84.0 bits (206), Expect = 2.030e-15 Identity = 63/187 (33.69%), Postives = 91/187 (48.66%), Query Frame = 1
Query: 16 IYTCYRQLHPPTGVDHAVFGSVISPGSRDLVVAKASILELYRIHRDKLLPSS--PRSGGEWLKNDAGAGFFLELVGTFPIAGNITALAVIPVGISTATAPQQQDILVVSFDLAKTALVAYDPTLGRLSTLSIHNFDPGAMGPGSGGVEFSYGLASAQRDRPATISSCDPAGRCVSAVVAGCLLVVLP 570
+Y Y+Q HPPTG++ A+F SP ++LVVA S L +YR++ D P+ P + + G LELV +F GN+ ++A S A ++D L++SF AK ++V YDP L TLS+H F+ E G + DP GRC ++ G LVVLP
Sbjct: 1 MYAVYKQAHPPTGLEFALFCHFFSPAEKNLVVAGTSQLYVYRLNHDCETPAPRVPPTLPHPVLEGKGHKEKLELVASFSFFGNVMSMA------SVQLAGAKRDALLLSFKDAKLSVVEYDPATHDLKTLSLHYFEE---------PELRDGFVQNVHIPRVRV---DPDGRCAVMLIYGTRLVVLP 169
BLAST of mRNA_H-elongata_contig47442.11865.1 vs. uniprot
Match: UPI0003F062C8 (LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit 1-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F062C8) HSP 1 Score: 83.6 bits (205), Expect = 2.750e-15 Identity = 61/185 (32.97%), Postives = 92/185 (49.73%), Query Frame = 1
Query: 16 IYTCYRQLHPPTGVDHAVFGSVISPGSRDLVVAKASILELYRIHRDKLLPSSPRSGGEWLKNDAGAGFFLELVGTFPIAGNITALAVIPVGISTATAPQQQDILVVSFDLAKTALVAYDPTLGRLSTLSIHNFDPGAMGPGSGGVEFSYGLASAQRDRPATISSCDPAGRCVSAVVAGCLLVVLP 570
+Y YRQ+HPPTG++H V+G S ++L++A A+ L +YR+ D G+ K LE + +F + GNI +L +T A +D L++SF AK ++V YDP L TLS+H F+ A+ G +Y + P + DP RC ++ G LVVLP
Sbjct: 1 MYALYRQIHPPTGIEHCVYGHFFSKEEKNLIIAGATDLHVYRLLSDVDAQGKGTDKGQESKQKKSK---LEHLRSFSLFGNIMSLQ------TTRLAGASRDALLLSFKDAKLSVVEYDPGTHDLKTLSLHYFEEEAL---KEGYVSNYYI-------PQVVV--DPDNRCAVMLMYGSKLVVLP 164
BLAST of mRNA_H-elongata_contig47442.11865.1 vs. uniprot
Match: UPI0003C8EE64 (cleavage and polyadenylation specificity factor subunit 1 isoform X1 n=2 Tax=Tupaia chinensis TaxID=246437 RepID=UPI0003C8EE64) HSP 1 Score: 83.2 bits (204), Expect = 3.760e-15 Identity = 62/186 (33.33%), Postives = 93/186 (50.00%), Query Frame = 1
Query: 16 IYTCYRQLHPPTGVDHAVFGSVISPGSRDLVVAKASILELYRIHRD-KLLPSSPRSGGEWLKNDAGAGFFLELVGTFPIAGNITALAVIPVGISTATAPQQQDILVVSFDLAKTALVAYDPTLGRLSTLSIHNFDPGAMGPGSGGVEFSYGLASAQRDRPATISSCDPAGRCVSAVVAGCLLVVLP 570
+Y Y+Q HPPTG++ A++ + + R+LVVA S L +YR++RD + L + RS + LELV +F GN+ ++A S A ++D L++SF AK ++V YDP L TLS+H F+ E G + DP GRC + ++ G LVVLP
Sbjct: 1 MYAVYKQAHPPTGLEFAMYCNFFNNSERNLVVAGTSQLYVYRLNRDAEALTKNDRSTEGKAHREK-----LELVASFSFFGNVMSMA------SVQLAGAKRDALLLSFKDAKLSVVEYDPGTHDLKTLSLHYFEE---------PELRDGFVQNVHTPRVRV---DPDGRCAAMLIYGTRLVVLP 163 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47442.11865.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig47442.11865.1 >prot_H-elongata_contig47442.11865.1 ID=prot_H-elongata_contig47442.11865.1|Name=mRNA_H-elongata_contig47442.11865.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=190bp MTSTAIYTCYRQLHPPTGVDHAVFGSVISPGSRDLVVAKASILELYRIHRback to top mRNA from alignment at H-elongata_contig47442:2296..2865- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig47442.11865.1 ID=mRNA_H-elongata_contig47442.11865.1|Name=mRNA_H-elongata_contig47442.11865.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=570bp|location=Sequence derived from alignment at H-elongata_contig47442:2296..2865- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig47442:2296..2865- >mRNA_H-elongata_contig47442.11865.1 ID=mRNA_H-elongata_contig47442.11865.1|Name=mRNA_H-elongata_contig47442.11865.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1140bp|location=Sequence derived from alignment at H-elongata_contig47442:2296..2865- (Himanthalia elongata Himel1 dioecious)back to top |