mRNA_H-elongata_contig47435.11863.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig47435.11863.1 vs. uniprot
Match: D7G483_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G483_ECTSI) HSP 1 Score: 262 bits (669), Expect = 7.660e-73 Identity = 170/384 (44.27%), Postives = 216/384 (56.25%), Query Frame = 1
Query: 109 CSTTLLENQASPHVKNNKGQVPAVIAMIHGHASIARNLLRAFSMVKPALRRFQVT---ANVAIATLPSYK-KPSAKSDAASDRAAVTAPGNKPKLS-----AGGVIDLEG--------GDDA--SIIPMRGNDQQLPDAVNIRERGGKGYSSKNTNESLRVMSAERKVITPDAGRKDTREGPEAGVDAS----DGAQASSMVSLRRAP---ILSHRASELGFAAEIGSEVLDALVPDYWDDNDIRCAISLAEKGSVWCLASLFALGLDPLCEHPDSGDTLGIAAVRGGHRNTLEVCLETGVCFAAKNKQGRTALHEAVSREDSEVAALLLANPYLSGLEAKDLCDPDXXXXXXXXXXXXXXXXXXXXXLAVQPDSEEEGACDGG 1182
C+T LLEN ASP VKNNKGQVPAV+AM+HGHAS + LL+AFS + A +R + A VA+A+ ++ +P +D +R+ KP G++ LEG D A +++ G+D PD RG +G + + S + R G K G +A VD D S S R + LS RAS+ G A ++ +L+ LVP +WDD+DIRCA++LAE+G WCLASLFALGLDP C+HPDSGDT+GIAA RGG R TLEVCLETGV FA KN++GR+ALH AV R+D EVAALLLANP LSG+E DLCDPD LA + DSE GG
Sbjct: 667 CATNLLENNASPVVKNNKGQVPAVVAMLHGHASTGKKLLQAFSAAETASKRSRTIDAFAAVAMASGVTHAVEPVVDADKDENRSGGRQGSEKPGAGXXXXXGDGLVGLEGITTPEVASADVAEPAVVGEGGSDHNTPDDAGSA-RGDRGLGAADGGAS--ELQGGRPHSATTVGEKAGSTGSDASVDGGGRGGDAVSVQSNASSRASASLEALSRRASKAGVAMDLNVIMLEDLVPRHWDDDDIRCAVALAERGEAWCLASLFALGLDPDCQHPDSGDTIGIAAARGGDRETLEVCLETGVSFATKNRRGRSALHAAVVRDDLEVAALLLANPGLSGIEVDDLCDPDEDGRTPLHEMAARGEAPTVLLLATEADSEWTTGGSGG 1047
BLAST of mRNA_H-elongata_contig47435.11863.1 vs. uniprot
Match: A0A6H5KKE4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKE4_9PHAE) HSP 1 Score: 108 bits (271), Expect = 1.590e-22 Identity = 53/87 (60.92%), Postives = 66/87 (75.86%), Query Frame = 1
Query: 1 DELARLLTSQPNSALDHAGVLGITPLHLTAERGYEKCSTTLLENQASPHVKNNKGQVPAVIAMIHGHASIARNLLRAFSMVKPALRR 261
DELARLLTS+ + ++ G+TP+HL A G+EKC+T LLEN ASP VKNNKGQVPAV+AM+HGHAS + LL+AFS K A +R
Sbjct: 221 DELARLLTSRSGTMVNVGDAGGVTPIHLAAAGGWEKCATNLLENNASPAVKNNKGQVPAVVAMLHGHASTGKKLLQAFSAAKTASKR 307 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47435.11863.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig47435.11863.1 >prot_H-elongata_contig47435.11863.1 ID=prot_H-elongata_contig47435.11863.1|Name=mRNA_H-elongata_contig47435.11863.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=512bp DELARLLTSQPNSALDHAGVLGITPLHLTAERGYEKCSTTLLENQASPHVback to top mRNA from alignment at H-elongata_contig47435:276..3713- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig47435.11863.1 ID=mRNA_H-elongata_contig47435.11863.1|Name=mRNA_H-elongata_contig47435.11863.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3438bp|location=Sequence derived from alignment at H-elongata_contig47435:276..3713- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig47435:276..3713- >mRNA_H-elongata_contig47435.11863.1 ID=mRNA_H-elongata_contig47435.11863.1|Name=mRNA_H-elongata_contig47435.11863.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3072bp|location=Sequence derived from alignment at H-elongata_contig47435:276..3713- (Himanthalia elongata Himel1 dioecious)back to top |