mRNA_H-elongata_contig47423.11861.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig47423.11861.1
Unique NamemRNA_H-elongata_contig47423.11861.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig47423.11861.1 vs. uniprot
Match: D7FWX9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWX9_ECTSI)

HSP 1 Score: 470 bits (1209), Expect = 2.170e-157
Identity = 233/337 (69.14%), Postives = 268/337 (79.53%), Query Frame = 1
Query:   43 MLDFVLHPCSRDTSGIAVNDPALLRVKTWASKQQDPIDGEYLPDASQTVDEFVAKGLFKDKFTAALLNGIEPEDGGSVGTPIESDGNGDCLLNSVAAFFAKTGNRGVRSAVKTMAVKLRLSIVLNGFKYMELFLLDQEHHFGTWYNYTSDVREMLTKNGWDVEPDTDNNWSVGSPDCARLIYLAQLWSIARPGVWLQQFVFPILATVVQSPLRVYIPFNSLNAANGGPWKHTLFLPVFLPAKERSTLHVVLTICYSSSYTPPFDNAADYLRYVKNNLPELNHFVTMSNDNAPVAKELALSKFEELKFSAIKAAAAARSKLQEALLDPSPEQMNLEQE 1053
            MLDFVLHP S DTSGI V D  L +V  W SKQ+DPIDGE LPDASQT  E + KGLFKDKFTAALLNGIEPEDGG VGTP ES+ NGDCLLNSVAAFFAK G RGVRSAVKTMAVKLRLS+VL G KYME+FLL+Q+ HFG WYNYTSDVRE L KNGW V PD DNNW VGS +CA L++LAQL SIA+PG WL QFVFPILATVVQSPLR+++P N+LN A GGPWKHTLFLP +   + R TLHV +T+ YSSSY PPFDNA  YL YV+N LPELNHFVT+S D A VAK+LAL+KF  LK  A +A  A++ ++ +A+L P   ++  ++E
Sbjct:    1 MLDFVLHPSSPDTSGIPVEDERLQKVTEWVSKQEDPIDGELLPDASQTAKELLTKGLFKDKFTAALLNGIEPEDGGGVGTPFESESNGDCLLNSVAAFFAKEGGRGVRSAVKTMAVKLRLSVVLYGLKYMEIFLLEQDDHFGAWYNYTSDVRERLEKNGWHVVPDVDNNWHVGSSNCAWLMFLAQLRSIAKPGAWLHQFVFPILATVVQSPLRLFLPLNTLNNAQGGPWKHTLFLPAWETGR-RPTLHVAMTMGYSSSYLPPFDNATGYLEYVENQLPELNHFVTVSGDTAIVAKDLALTKFRTLKSKAKEAVTASKRQVHDAMLGPKLNELTADEE 336          
BLAST of mRNA_H-elongata_contig47423.11861.1 vs. uniprot
Match: A0A6H5K9T1_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9T1_9PHAE)

HSP 1 Score: 435 bits (1118), Expect = 5.270e-138
Identity = 227/357 (63.59%), Postives = 269/357 (75.35%), Query Frame = 1
Query:    1 MASPHVQALAKVQHMLDFVLHPCSRDTSGIAVNDPALLRVKTWASKQQDPIDGEYLPDASQTVDEFV------AKGLFKDKFTAALLNGIEPEDGGSVGTPIESDGNGDCLLNSVAAFFAKTGNRGVRSAVKTMAVKLRLSIVLNGFKYMELFLLDQEHHFGTWYNYTSDVREMLTKNGWDVEPDTDNNWSVGSPDCARLIYLAQLWSIARPGVWLQQFVFPILATVVQSPLRVYIPFNSLNAANGGPWKHTLFLPVFLPAKERSTLHVVLTICYSSSYTPPFDNAADYLRYVKNNLPELNHFVTMSNDNAPVAKELALSKFEELKFSAIKAAAAARSKLQEALLDPSPEQMNLEQE 1053
            MA+  +QALAKV+  LDFVLHP S DTSGI V D  L +V    SKQ DP+DGE LPDAS+   E         +GLFK KFTAALLNG++PEDGG VGTP ES+GNGDCLLNSVAAF AK G RGVRSAVKTMAVKLRLS+VL G KYMELFLL+Q++HFG WYNYT+DVRE L KNGW V    DNNW VGS +CARL++LAQL S A+PG WLQQF FPILATVVQSPLRV++PFN+   A GG WKH +F P +  A+ RSTLHV +T  YSSSY PPFDNA  YL YV+N LPELNHFVT+S+D A VAK+ A+ KF  LK  A +A  A++ ++Q+A+L P   ++  ++E
Sbjct:    1 MANSQLQALAKVRGTLDFVLHPSSPDTSGIPVEDERLQKVTECVSKQDDPVDGELLPDASKVHGELTDRKGAPGEGLFKGKFTAALLNGVKPEDGGGVGTPFESEGNGDCLLNSVAAFLAKEGGRGVRSAVKTMAVKLRLSVVLYGLKYMELFLLEQDYHFGAWYNYTTDVRERLEKNGWHVVH-VDNNWHVGSSNCARLMFLAQLRSKAKPGAWLQQFAFPILATVVQSPLRVFLPFNAFTNAQGGSWKH-IFQPAWETAR-RSTLHVAMTTGYSSSYHPPFDNATGYLEYVENQLPELNHFVTVSDDTAIVAKDRAVRKFRMLKSQAKEAVKASKRQVQDAMLGPELNELTADEE 354          
BLAST of mRNA_H-elongata_contig47423.11861.1 vs. uniprot
Match: A0A6H5JY21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY21_9PHAE)

HSP 1 Score: 377 bits (968), Expect = 4.350e-121
Identity = 201/342 (58.77%), Postives = 236/342 (69.01%), Query Frame = 1
Query:  115 RVKTWASKQQDPIDGEYLPDASQ-----------------------------TVDEFVAKGLFKDKFTAALLNGIEPEDGGSVGTPIESDGNGDCLLNSVAAFFAKTGNRGVRSAVKTMAVKLRLSIVLNGFKYMELFLLDQEHHFGTWYNYTSDVREMLTKNGWDVEPDTDNNWSVGSPDCARLIYLAQLWSIARPGVWLQQFVFPILATVVQSPLRVYIPFNSLNAANGGPWKHTLFLPVFLPAKERSTLHVVLTICYSSSYTPPFDNAADYLRYVKNNLPELNHFVTMSNDNAPVAKELALSKFEELKFSAIKAAAAARSKLQEALLDPSPEQMNLEQE 1053
            +V  W SKQ+DP DGE LPDASQ                             T  E  AKGLFKDKFTAALLNG+EPEDGG VGTP  S+GNGDCLLNSVAAFFAK G RGVRSAV+TMAVKLRLS+               + HFG WYNYTSDVRE L KN W V PD DNNW VGS +CARL++LAQL SIA+P  WLQQFV PILATVV SPLRV++PFN+ N A GGPWKHT FLP +  A+ RSTLHV +T+ Y+SSY PPFDNA  YL YV+N LPELNHFVT+S+D A VAK+ A+ KF  LK  A +A  A++ ++Q+A+L P   ++  ++E
Sbjct:   12 KVTEWVSKQEDP-DGELLPDASQVPGELTVFSTLTINLIIYGRNVSSSIPVQTAKELQAKGLFKDKFTAALLNGVEPEDGGGVGTPFGSEGNGDCLLNSVAAFFAKEGGRGVRSAVQTMAVKLRLSV---------------DDHFGAWYNYTSDVRERLEKNEWHVVPDVDNNWHVGSSNCARLMFLAQLRSIAKPRAWLQQFVVPILATVVHSPLRVFLPFNTFNNAQGGPWKHTHFLPAWETAR-RSTLHVAMTMGYNSSYHPPFDNATGYLEYVENQLPELNHFVTVSDDTAIVAKDRAVRKFRMLKSQAKEAVKASKRQVQDAMLGPELNKLTADEE 336          
BLAST of mRNA_H-elongata_contig47423.11861.1 vs. uniprot
Match: D7FZ28_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ28_ECTSI)

HSP 1 Score: 325 bits (833), Expect = 9.640e-109
Identity = 159/210 (75.71%), Postives = 174/210 (82.86%), Query Frame = 1
Query:    1 MASPHVQALAKVQHMLDFVLHPCSRDTSGIAVNDPALLRVKTWASKQQDPIDGEYLPDASQTVDEFVAKGLFKDKFTAALLNGIEPEDGGSVGTPIESDGNGDCLLNSVAAFFAKTGNRGVRSAVKTMAVKLRLSIVLNGFKYMELFLLDQEHHFGTWYNYTSDVREMLTKNGWDVEPDTDNNWSVGSPDCARLIYLAQLWSIARPGVWL 630
            MA+  +QALAKV+ MLDFVLHP S DTSGI V D  L +V  W SKQ+DPIDGE LPDASQT  E +AKGLFKD FTAALLNGIEPEDGG VGTP ES+GNGDCLLNSVAA FAK G RGVRSAVKTMAVKLRLS+VL G KYME+FLL+Q+ HFG WYNYTSDVRE L KNGW V PD DNNW VGS +CARL++LAQL SIA+PG WL
Sbjct:    1 MANSQLQALAKVRGMLDFVLHPSSPDTSGIPVEDERLQKVMEWVSKQEDPIDGELLPDASQTAKELLAKGLFKDNFTAALLNGIEPEDGGGVGTPFESEGNGDCLLNSVAALFAKEGGRGVRSAVKTMAVKLRLSVVLYGLKYMEIFLLEQDDHFGAWYNYTSDVRERLEKNGWHVVPDVDNNWHVGSSNCARLMFLAQLRSIAKPGAWL 210          
BLAST of mRNA_H-elongata_contig47423.11861.1 vs. uniprot
Match: A0A6H5KLL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLL4_9PHAE)

HSP 1 Score: 281 bits (720), Expect = 7.360e-92
Identity = 141/187 (75.40%), Postives = 151/187 (80.75%), Query Frame = 1
Query:    1 MASPHVQALAKVQHMLDFVLHPCSRDTSGIAVNDPALLRVKTWASKQQDPIDGEYLPDASQTVDEFVAKGLFKDKFTAALLNGIEPEDGGSVGTPIESDGNGDCLLNSVAAFFAKTGNRGVRSAVKTMAVKLRLSIVLNGFKYMELFLLDQEHHFGTWYNYTSDVREMLTKNGWDVEPDTDNNWSVG 561
            M+S  +QALAKV+ MLDFVLHP S DTSGI V D  L +V  W SK +DPIDGE LP ASQT +E VAKGLFKDKFTAALLNGIEPEDGG VGTP ESDGNGDCLLNSVAAFFAK G RGVRSAVKTMAVKLRLS+VL G KYMELFLL+Q+ HFG WYNYTSDV E L KNGWD  PD D   + G
Sbjct:    1 MSSSQLQALAKVRGMLDFVLHPSSPDTSGIPVGDEKLRKVMEWVSKWEDPIDGELLPGASQTAEELVAKGLFKDKFTAALLNGIEPEDGGGVGTPFESDGNGDCLLNSVAAFFAKDGGRGVRSAVKTMAVKLRLSVVLYGLKYMELFLLEQDEHFGAWYNYTSDVWERLAKNGWDGAPDPDKTGTSG 187          
BLAST of mRNA_H-elongata_contig47423.11861.1 vs. uniprot
Match: A0A6H5JBV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV0_9PHAE)

HSP 1 Score: 285 bits (728), Expect = 3.460e-87
Identity = 144/210 (68.57%), Postives = 159/210 (75.71%), Query Frame = 1
Query:    1 MASPHVQALAKVQHMLDFVLHPCSRDTSGIAVNDPALLRVKTWASKQQDPIDGEYLPDASQTVD---EFVAKGLFKDKFTAALLNGIEPEDGGSVGTPIESDGNGDCLLNSVAAFFAKTGNRGVRSAVKTMAVKLRLSIVLNGFKYMELFLLDQEHHFGTWYNYTSDVREMLTKNGWDVEPDTDNNWSVGSPDCARLIYLAQLWSIARPG 621
            M+S  +QALAKV+ MLDFVLHP S DTSGI V D  L +V  W  K++DPIDGE LPDA Q       F  +   +    A LLNGIEPEDGG VGTP ESDGNGDCLLNSVAAFFAK G RGVRSAVKTMAVKLR+S+VL G KYMELFLL+Q+ H G WYNYTSDVRE L KNGWDV PD  NNW VGS  CARL++LAQL SIA+PG
Sbjct:    1 MSSSQLQALAKVRGMLDFVLHPSSPDTSGIPVGDEKLRKVMEWVFKREDPIDGELLPDACQVCAPQRSFWPRACLRTSSPATLLNGIEPEDGGGVGTPFESDGNGDCLLNSVAAFFAKDGGRGVRSAVKTMAVKLRVSVVLYGLKYMELFLLEQDEHLGAWYNYTSDVRERLGKNGWDVAPDRGNNWHVGSSKCARLMFLAQLRSIAKPG 210          
BLAST of mRNA_H-elongata_contig47423.11861.1 vs. uniprot
Match: A0A6H5KB76_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB76_9PHAE)

HSP 1 Score: 290 bits (742), Expect = 1.180e-85
Identity = 149/224 (66.52%), Postives = 162/224 (72.32%), Query Frame = 1
Query:   64 PCSRDTSGIAVNDPALLRVKTWASKQQDPIDGEYLPDASQTVDEFVAKGLFKDKFTAALLNGIEPEDGGSVGTPIESDGNGDCLLNSVAAFFAKTGNRGVRSAVKTMAVKLRLSIVLNGFKYMELFLLDQEHHFGTWYNYTSDVREMLTKNGWDVEPDTDNNWSVGSPDCARLIYLAQLWSIARPGVWLQQFVFPILATVVQSPLRVY-----IPFNSLNAANG 720
            P S DTSGI V D  L +V  W SKQ+DPIDGE LPDASQT  E +AKGLFKDKFTAALLNG+EPED G VGTP ES+GNGDCLLNSVAA FA  G RGVRSAVKTMAVKLR S+               + HFG WYNYTSDVR+ L KNGW V PD DNNW VGS  CARL++LAQL SIA+PG WLQQFVFPILATV QSPL  +     +P NS N   G
Sbjct:   16 PVSPDTSGIPVEDERLQKVTEWVSKQEDPIDGELLPDASQTAKELLAKGLFKDKFTAALLNGVEPEDDGGVGTPFESEGNGDCLLNSVAALFANEGGRGVRSAVKTMAVKLRFSV---------------DGHFGVWYNYTSDVRKRLEKNGWHVVPDVDNNWHVGSSKCARLMFLAQLRSIAKPGAWLQQFVFPILATVAQSPLDDWWMCFGLPPNSKNRLQG 224          
BLAST of mRNA_H-elongata_contig47423.11861.1 vs. uniprot
Match: A0A6H5K991_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K991_9PHAE)

HSP 1 Score: 264 bits (674), Expect = 2.540e-80
Identity = 146/321 (45.48%), Postives = 197/321 (61.37%), Query Frame = 1
Query:    7 SPHVQALAKVQHMLDFVLHPCSRDTSGIAVNDPALLRVKTWASKQQDPIDGEYLPDASQTVDEFVAKGLFKDKFTAALLNGIEPEDGGSVGTPIESDGNGDCLLNSVAAFFAKTGNRGVRSAVKTMAVKLRLSIVLNGFKYMELFLLDQEHHFGTWYNYTSDVREMLTKNGWDVEPDTDNNWSVGSPDCARLIYLAQLWSIARPGVWLQQFVFPILATVVQSPLRVYIPFNSLNAANGGPWKHTLFLPVFLPAKERSTLHVVLTICYSSSYTPPFDNAADYLRYVKNNLPELNHFVTMSNDNAPVAKELALSKFEELKFSA 969
            +P    L++ +  L  VL+    DT GIAV  P L   K  ASK  DPI    L   S+T  E   K L  D FT ALL G+ P DG  VGTP  ++G+G+C LN+VA  F     RG+R+ VKT A KLRL+IVL G +++E ++  QE  F    NY  +VR+ L K+GW +EPD DN   VGS  CARL+++AQL   A+   WLQQFVFPILATV+Q+PLRV++P  SL+ A G  W HTLF P++     R  +HVV TI  S+ Y P F++AA +      +LPELNH+V++S++NA  A   A++   +L+ +A
Sbjct:   16 NPFYAKLSESKDALGAVLNNRGGDTHGIAVEQPQLKTAKLRASKVTDPILSNPLTSPSKTSSELRDKDLCFDYFTEALLRGVPPVDGCGVGTPFITEGDGNCHLNAVAQLFVVKKVRGIRNDVKTFAAKLRLAIVLEGLRHIEAYVSVQEDFFMDGSNYGDEVRDELPKSGWKIEPDLDNKMRVGSRQCARLMFIAQLRHTAQNRRWLQQFVFPILATVIQTPLRVFLPSRSLSDAYGATWDHTLFRPLYSSGPPRPAVHVVSTIASSAEYRPNFEDAAGWRAQHMPHLPELNHWVSLSSENAATAHASAVAASAQLRQTA 336          
BLAST of mRNA_H-elongata_contig47423.11861.1 vs. uniprot
Match: A0A6H5K057_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K057_9PHAE)

HSP 1 Score: 244 bits (622), Expect = 4.650e-76
Identity = 126/181 (69.61%), Postives = 137/181 (75.69%), Query Frame = 1
Query:    1 MASPHVQALAKVQHMLDFVLHPCSRDTSGIAVNDPALLRVKTWASKQQDPIDGEYLPDASQTVDEFVAKGLFKDKFTAALLNGIEPEDGGSVGTPIESDGNGDCLLNSVAAFFAKTGNRGVRSAVKTMAVKLRLSIVLNGFKYMELFLLDQEHHFGTWYNYTSDVREMLTKNGWDVEPDTD 543
            M+S  +QALAKV+ MLDFVLHP S DTSGI V D  L +V  W SK++DPIDGE LPDA QT +E +AKGLFKDKFTAALLNGIEPEDGG VGTP ESDGNGDCLLNSVA                TMAVKLRLS+VL G KYMELFLL+Q+ HFG WYNYTSD RE L KNGWDV PD D
Sbjct:    1 MSSSQLQALAKVRGMLDFVLHPSSPDTSGIPVGDEKLRKVMEWVSKREDPIDGELLPDACQTAEELLAKGLFKDKFTAALLNGIEPEDGG-VGTPFESDGNGDCLLNSVA----------------TMAVKLRLSVVLYGLKYMELFLLEQDEHFGAWYNYTSDTRERLAKNGWDVAPDPD 164          
BLAST of mRNA_H-elongata_contig47423.11861.1 vs. uniprot
Match: A0A6H5JGK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGK0_9PHAE)

HSP 1 Score: 261 bits (668), Expect = 1.410e-75
Identity = 145/338 (42.90%), Postives = 201/338 (59.47%), Query Frame = 1
Query:    7 SPHVQALAKVQHMLDFVLHPCSRDTSGIAVNDPALLRVKTWASKQQDPIDGEYLPDASQTVDEFVAKGLFKDKFTAALLNGIEPEDGGSVGTPIESDGNGDCLLNSVAAFFAKTGNRGVRSAVKTMAVKLRLSIVLNGFKYMELFLLDQEHHFGTWYNYTSDVREMLTKNGWDVEPDTDNNWSVGSPDCARLIYLAQLWSIARPGVWLQQFVFPILATVVQSPLRVYIPFNSLNAANGGPWKHTLFLPVFLPAKERSTLHVVLTICYSSSYTPPFDNAADYLRYVKNNLPELNHFVTMSNDNAPVAKELALSKFEELKFSAIKAAAAARSKLQEALLD 1020
            +P   AL  ++ +L  V+     D  GIAV+ PA+   K  A ++  P D   LP  SQT  E + KG     FT+A+L GI  EDG   GTP  +DG+G+CLLN+VA    K   RGVR+AVKTMA +LRL IV+ G + +E++L  Q   +GTWYNY   V   L + GW V+   +N W + S DCARL++L  L  IAR  V+LQQFV P+LATV++ P+RV++PF S+   NGG W+ TLF P+  P   R T+HVV+T   S+ Y P F +A +Y R     + ELNHFV +S+DN     E A+++   L   A      + ++L+EA+ D
Sbjct:   12 NPQQAALGDLRSLLGAVVRKPRGDAHGIAVDHPAVAEAKRRALQKGGPFDHFPLPSPSQTDRELLEKGAEPCHFTSAILRGINHEDGREAGTPYLTDGDGNCLLNAVAMLLVKKQPRGVRNAVKTMAAQLRLGIVVEGLRNIEVYLDRQYEFYGTWYNYVDQVVFDLKRCGWVVDAMPENRWRMASRDCARLVFLGCLHHIARDKVFLQQFVLPMLATVIRGPVRVFVPFISVQNVNGGEWQWTLFQPLVAPDPGRQTVHVVMTYVSSADYRPQFSDAHEYKRLNGGRIRELNHFVALSHDNTAKNHEAAVTRMAGLVRLAQDDCKESEARLKEAVGD 349          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47423.11861.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWX9_ECTSI2.170e-15769.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K9T1_9PHAE5.270e-13863.59SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JY21_9PHAE4.350e-12158.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZ28_ECTSI9.640e-10975.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KLL4_9PHAE7.360e-9275.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBV0_9PHAE3.460e-8768.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KB76_9PHAE1.180e-8566.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K991_9PHAE2.540e-8045.48Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K057_9PHAE4.650e-7669.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGK0_9PHAE1.410e-7542.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig47423contigH-elongata_contig47423:699..2869 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-13_000130.1
Exons3
Model size1053
Cds size1053
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig47423.11861.1prot_H-elongata_contig47423.11861.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig47423 699..2869 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930783.0190365-CDS-H-elongata_contig47423:698..10571622930783.0190365-CDS-H-elongata_contig47423:698..1057Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47423 699..1057 -
1691679568.1899972-CDS-H-elongata_contig47423:698..10571691679568.1899972-CDS-H-elongata_contig47423:698..1057Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47423 699..1057 -
1622930783.0369103-CDS-H-elongata_contig47423:1381..18921622930783.0369103-CDS-H-elongata_contig47423:1381..1892Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47423 1382..1892 -
1691679568.1977062-CDS-H-elongata_contig47423:1381..18921691679568.1977062-CDS-H-elongata_contig47423:1381..1892Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47423 1382..1892 -
1622930783.0560164-CDS-H-elongata_contig47423:2686..28691622930783.0560164-CDS-H-elongata_contig47423:2686..2869Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47423 2687..2869 -
1691679568.2057788-CDS-H-elongata_contig47423:2686..28691691679568.2057788-CDS-H-elongata_contig47423:2686..2869Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47423 2687..2869 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig47423.11861.1

>prot_H-elongata_contig47423.11861.1 ID=prot_H-elongata_contig47423.11861.1|Name=mRNA_H-elongata_contig47423.11861.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=351bp
MASPHVQALAKVQHMLDFVLHPCSRDTSGIAVNDPALLRVKTWASKQQDP
IDGEYLPDASQTVDEFVAKGLFKDKFTAALLNGIEPEDGGSVGTPIESDG
NGDCLLNSVAAFFAKTGNRGVRSAVKTMAVKLRLSIVLNGFKYMELFLLD
QEHHFGTWYNYTSDVREMLTKNGWDVEPDTDNNWSVGSPDCARLIYLAQL
WSIARPGVWLQQFVFPILATVVQSPLRVYIPFNSLNAANGGPWKHTLFLP
VFLPAKERSTLHVVLTICYSSSYTPPFDNAADYLRYVKNNLPELNHFVTM
SNDNAPVAKELALSKFEELKFSAIKAAAAARSKLQEALLDPSPEQMNLEQ
E
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mRNA from alignment at H-elongata_contig47423:699..2869-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig47423.11861.1 ID=mRNA_H-elongata_contig47423.11861.1|Name=mRNA_H-elongata_contig47423.11861.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2171bp|location=Sequence derived from alignment at H-elongata_contig47423:699..2869- (Himanthalia elongata Himel1 dioecious)
ATGGCGAGCCCTCACGTTCAAGCGTTGGCAAAAGTGCAACATATGCTTGA CTTTGTCCTCCACCCATGTTCACGTGACACGAGTGGTATAGCGGTGAACG ATCCCGCCTTGCTGAGGGTGAAGACATGGGCCTCTAAGCAGCAGGATCCT ATTGATGGCGAATATCTACCAGATGCGTCTCAGGTATGTGTGCAAGGGCG AGTTAATGTATGGCGCCTGCTTCGCAGTTCTTCTCACAAAATTACATCGC CGAACTTCAAATCCAAACACATTATTCTCTATTTTTTTCACCCACTGCCG AGACAGACACGTTTCACGTGCATCATGTGTGATTCTGGAAGCCTGATTAT AAGCTTTTCCACTCGTTTTCGGGTTAGAGACCTAGCCGTGGGAGTTATTT CAGAGACTCAAGAGTTACTTTGAAATCATATGTCTCGCGCGAGAGGTTCA GTACTACTTACCCTTGTCGAAATTATATGGCAGATCCAGATCTATGGATA TGGTGTCTTAAAGAAGCTGGGTTTACACCATGTATTAGACTTGTACCTCC TACAGTAACGCTCGTAAGCTATCGCTTGGGATCAATACGTAGTCTACTTC AGACCCCAACTATGATTCACAAATTTGCGCTGTTCATTTAAAGCCTACCT ATACTAATCGTCCCGTACGGTAGGAACATCTGTCGGACCATTCGTAGCAT GTTAAAGAGGCGATTGTCAAAGCCGAGGTGTACGTGACAGCGAAACGTTA CTAAACGTTCATACACCAATGCCGGAAAAGCAACCACGAATCTTAGAGCA GAATGTAATTGGCATATTCTGTTTGTCACTGTTTTCTTGCGGCGGAAACA CCGTGAAATTAGCTATATCTATATTCTAATGTCTATTGGTGACATGATCA ATACACACATTCACCATTTTCCCCGTATGAGGTCGAAAATGTACCCCTGC TTTTGTGTCGTCGATTTCCCTGTGCAGACCGTAGATGAGTTTGTGGCGAA GGGCCTGTTCAAGGACAAGTTCACGGCGGCCCTCCTCAACGGAATTGAAC CCGAAGATGGTGGTAGTGTGGGCACTCCAATCGAGAGCGATGGCAACGGT GACTGTTTGTTGAATTCCGTTGCGGCATTCTTTGCAAAGACGGGAAATCG AGGTGTGAGAAGTGCTGTCAAGACAATGGCGGTGAAGCTGCGACTTAGCA TCGTGCTGAACGGGTTTAAATACATGGAACTATTTCTTTTGGATCAGGAA CACCACTTCGGCACGTGGTACAACTATACGTCGGATGTGCGGGAAATGCT GACGAAGAACGGATGGGACGTGGAGCCTGACACCGACAACAACTGGTCCG TTGGGTCACCAGACTGCGCGCGGCTGATTTACCTTGCACAGCTATGGAGC ATTGCCAGGCCGGGGGTATGGCTCCAACAGTTTGTATTTCCCATCCTTGC CACTGTCGTCCAGTCTCCTCTCCGGGTGTATATTCCATGTGAGTATTTTT TCTGGATGTGTGTTCAATCTATTATCACTTGTCAAGTAGGACCACTATTG TATATAAGTAGAAGCAGAACTCAGACAATAAGGTAGTGGTGGACACCTGT TTCACCCTTTCTTGCACACGCAGCGTTGTGTAAACAATATTTACGAAATT TGATCGGTGTCAACTCATTGGGTGTCTGCCGATCAAACGCCCAGTCATCA TGTAAGGTTCGGAATAATCAAGCTGCGCAGCCGAACGGAAAAGTGGAAAG TGGATACTTTGTCACGCATGTGATTGTCGTGTTCGGGTCCGCTTACTTTC ATTCTGTTACAGTCAACTCCCTCAACGCCGCCAACGGAGGACCTTGGAAG CATACGTTGTTCCTCCCGGTGTTCCTACCGGCGAAGGAAAGGTCCACACT CCATGTCGTCCTGACCATTTGTTACAGCAGCAGCTACACACCACCCTTCG ACAATGCGGCCGATTACTTACGGTATGTGAAGAACAATCTTCCTGAGCTA AACCACTTCGTGACAATGTCCAACGACAATGCCCCGGTCGCGAAGGAGCT TGCTCTTTCGAAATTTGAAGAATTAAAGTTTTCTGCAATAAAGGCGGCAG CTGCCGCAAGGAGCAAGCTACAGGAAGCTTTGCTCGACCCGTCGCCAGAA CAAATGAATCTTGAGCAAGAG
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Coding sequence (CDS) from alignment at H-elongata_contig47423:699..2869-

>mRNA_H-elongata_contig47423.11861.1 ID=mRNA_H-elongata_contig47423.11861.1|Name=mRNA_H-elongata_contig47423.11861.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2106bp|location=Sequence derived from alignment at H-elongata_contig47423:699..2869- (Himanthalia elongata Himel1 dioecious)
ATGGCGAGCCCTCACGTTCAAGCGTTGGCAAAAGTGCAACATATGCTTGA
CTTTGTCCTCCACCCATGTTCACGTGACACGAGTGGTATAGCGGTGAACG
ATCCCGCCTTGCTGAGGGTGAAGACATGGGCCTCTAAGCAGCAGGATCCT
ATTGATGGCGAATATCTACCAGATGCGTCTCAGATGGCGAGCCCTCACGT
TCAAGCGTTGGCAAAAGTGCAACATATGCTTGACTTTGTCCTCCACCCAT
GTTCACGTGACACGAGTGGTATAGCGGTGAACGATCCCGCCTTGCTGAGG
GTGAAGACATGGGCCTCTAAGCAGCAGGATCCTATTGATGGCGAATATCT
ACCAGATGCGTCTCAGACCGTAGATGAGTTTGTGGCGAAGGGCCTGTTCA
AGGACAAGTTCACGGCGGCCCTCCTCAACGGAATTGAACCCGAAGATGGT
GGTAGTGTGGGCACTCCAATCGAGAGCGATGGCAACGGTGACTGTTTGTT
GAATTCCGTTGCGGCATTCTTTGCAAAGACGGGAAATCGAGGTGTGAGAA
GTGCTGTCAAGACAATGGCGGTGAAGCTGCGACTTAGCATCGTGCTGAAC
GGGTTTAAATACATGGAACTATTTCTTTTGGATCAGGAACACCACTTCGG
CACGTGGTACAACTATACGTCGGATGTGCGGGAAATGCTGACGAAGAACG
GATGGGACGTGGAGCCTGACACCGACAACAACTGGTCCGTTGGGTCACCA
GACTGCGCGCGGCTGATTTACCTTGCACAGCTATGGAGCATTGCCAGGCC
GGGGGTATGGCTCCAACAGTTTGTATTTCCCATCCTTGCCACTGTCGTCC
AGTCTCCTCTCCGGGTGTATATTCCATACCGTAGATGAGTTTGTGGCGAA
GGGCCTGTTCAAGGACAAGTTCACGGCGGCCCTCCTCAACGGAATTGAAC
CCGAAGATGGTGGTAGTGTGGGCACTCCAATCGAGAGCGATGGCAACGGT
GACTGTTTGTTGAATTCCGTTGCGGCATTCTTTGCAAAGACGGGAAATCG
AGGTGTGAGAAGTGCTGTCAAGACAATGGCGGTGAAGCTGCGACTTAGCA
TCGTGCTGAACGGGTTTAAATACATGGAACTATTTCTTTTGGATCAGGAA
CACCACTTCGGCACGTGGTACAACTATACGTCGGATGTGCGGGAAATGCT
GACGAAGAACGGATGGGACGTGGAGCCTGACACCGACAACAACTGGTCCG
TTGGGTCACCAGACTGCGCGCGGCTGATTTACCTTGCACAGCTATGGAGC
ATTGCCAGGCCGGGGGTATGGCTCCAACAGTTTGTATTTCCCATCCTTGC
CACTGTCGTCCAGTCTCCTCTCCGGGTGTATATTCCATTCAACTCCCTCA
ACGCCGCCAACGGAGGACCTTGGAAGCATACGTTGTTCCTCCCGGTGTTC
CTACCGGCGAAGGAAAGGTCCACACTCCATGTCGTCCTGACCATTTGTTA
CAGCAGCAGCTACACACCACCCTTCGACAATGCGGCCGATTACTTACGGT
ATGTGAAGAACAATCTTCCTGAGCTAAACCACTTCGTGACAATGTCCAAC
GACAATGCCCCGGTCGCGAAGGAGCTTGCTCTTTCGAAATTTGAAGAATT
AAAGTTTTCTGCAATAAAGGCGGCAGCTGCCGCAAGGAGCAAGCTACAGG
AAGCTTTGCTCGACCCGTCGCCAGAACAAATGAATCTTGAGCAAGAGTCA
ACTCCCTCAACGCCGCCAACGGAGGACCTTGGAAGCATACGTTGTTCCTC
CCGGTGTTCCTACCGGCGAAGGAAAGGTCCACACTCCATGTCGTCCTGAC
CATTTGTTACAGCAGCAGCTACACACCACCCTTCGACAATGCGGCCGATT
ACTTACGGTATGTGAAGAACAATCTTCCTGAGCTAAACCACTTCGTGACA
ATGTCCAACGACAATGCCCCGGTCGCGAAGGAGCTTGCTCTTTCGAAATT
TGAAGAATTAAAGTTTTCTGCAATAAAGGCGGCAGCTGCCGCAAGGAGCA
AGCTACAGGAAGCTTTGCTCGACCCGTCGCCAGAACAAATGAATCTTGAG
CAAGAG
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