mRNA_H-elongata_contig4741.11859.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig4741.11859.1
Unique NamemRNA_H-elongata_contig4741.11859.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig4741.11859.1 vs. uniprot
Match: A0A836CMA9_9STRA (Flagellar WD repeat-containing protein Pf 20 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMA9_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 8.970e-8
Identity = 26/36 (72.22%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:  421 VLELKGHEDAVQSVLFSPADDSLVSTSSDCTFRIWS 528
            V EL+GHEDAVQSV FSP DD +VS ++DCTFR+WS
Sbjct:  595 VAELRGHEDAVQSVAFSPMDDCIVSAAADCTFRVWS 630
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BLAST of mRNA_H-elongata_contig4741.11859.1 vs. uniprot
Match: D8TZX5_VOLCA (Uncharacterized protein n=3 Tax=Volvox TaxID=3066 RepID=D8TZX5_VOLCA)

HSP 1 Score: 60.5 bits (145), Expect = 1.620e-7
Identity = 134/173 (77.46%), Postives = 145/173 (83.82%), Query Frame = 1 
Query:   10 VRLWDIVSHRCRQTFRGHVDSVNTVAWQPFSNNICTGSGDKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTISKTCVLELKGHEDAVQSVLFSPADDSLVSTSSDCTFRIWS 528
            VRL D+ + +CR   RGHVDSVN VAW PF++++ T S D XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        EL GHEDAVQ+V+F PA   L+S  SD TFR+WS
Sbjct:  412 VRLXDLPASKCRMALRGHVDSVNEVAWLPFTSSLATASSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDGVLQAELTGHEDAVQAVIFDPAGQYLMSCGSDNTFRVWS 584
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BLAST of mRNA_H-elongata_contig4741.11859.1 vs. uniprot
Match: A0A7S3GV74_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GV74_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 2.130e-7
Identity = 24/37 (64.86%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:    1 DHTVRLWDIVSHRCRQTFRGHVDSVNTVAWQPFSNNI 111
            D T + +D+ + RCRQTFRGHVDSVN V  QPFSNN+
Sbjct:   26 DQTTKAFDMTTMRCRQTFRGHVDSVNFVTMQPFSNNV 62
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BLAST of mRNA_H-elongata_contig4741.11859.1 vs. uniprot
Match: A0A6U4DU09_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4DU09_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.880e-6
Identity = 23/33 (69.70%), Postives = 29/33 (87.88%), Query Frame = 1 
Query:  427 ELKGHEDAVQSVLFSPADDSLVSTSSDCTFRIW 525
            EL+GHEDAVQ+V+F P D +L+S +SDCTFRIW
Sbjct:  574 ELRGHEDAVQAVIFDPTDRNLISAASDCTFRIW 606
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BLAST of mRNA_H-elongata_contig4741.11859.1 vs. uniprot
Match: F0YRQ4_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YRQ4_AURAN)

HSP 1 Score: 56.2 bits (134), Expect = 3.150e-6
Identity = 25/32 (78.12%), Postives = 27/32 (84.38%), Query Frame = 1 
Query:  433 KGHEDAVQSVLFSPADDSLVSTSSDCTFRIWS 528
            +GHEDAVQ V F PAD  LVSTS+DCTFRIWS
Sbjct:  249 RGHEDAVQCVAFDPADTLLVSTSTDCTFRIWS 280
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BLAST of mRNA_H-elongata_contig4741.11859.1 vs. uniprot
Match: A0A7S3ZNX7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZNX7_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 3.220e-6
Identity = 25/32 (78.12%), Postives = 27/32 (84.38%), Query Frame = 1 
Query:  433 KGHEDAVQSVLFSPADDSLVSTSSDCTFRIWS 528
            +GHEDAVQ V F PAD  LVSTS+DCTFRIWS
Sbjct:  428 RGHEDAVQGVCFDPADTLLVSTSTDCTFRIWS 459
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BLAST of mRNA_H-elongata_contig4741.11859.1 vs. uniprot
Match: A0A7S3ZNS2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZNS2_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 3.430e-6
Identity = 25/32 (78.12%), Postives = 27/32 (84.38%), Query Frame = 1 
Query:  433 KGHEDAVQSVLFSPADDSLVSTSSDCTFRIWS 528
            +GHEDAVQ V F PAD  LVSTS+DCTFRIWS
Sbjct:  558 RGHEDAVQGVCFDPADTLLVSTSTDCTFRIWS 589
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BLAST of mRNA_H-elongata_contig4741.11859.1 vs. uniprot
Match: A0A7S0X5W5_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0X5W5_9CHLO)

HSP 1 Score: 53.5 bits (127), Expect = 3.950e-5
Identity = 25/42 (59.52%), Postives = 29/42 (69.05%), Query Frame = 1 
Query:  403 TISKTCVLELKGHEDAVQSVLFSPADDSLVSTSSDCTFRIWS 528
            T+    V ELKGHEDAVQ V+F P+   LVS  SD TFR+WS
Sbjct:  574 TVDGRLVAELKGHEDAVQGVVFDPSGKFLVSCGSDSTFRLWS 615
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig4741.11859.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A836CMA9_9STRA8.970e-872.22Flagellar WD repeat-containing protein Pf 20 n=1 T... [more]
D8TZX5_VOLCA1.620e-777.46Uncharacterized protein n=3 Tax=Volvox TaxID=3066 ... [more]
A0A7S3GV74_9STRA2.130e-764.86Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A6U4DU09_9STRA1.880e-669.70Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
F0YRQ4_AURAN3.150e-678.13Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A7S3ZNX7_9STRA3.220e-678.13Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3ZNS2_9STRA3.430e-678.13Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S0X5W5_9CHLO3.950e-559.52Hypothetical protein n=1 Tax=Mantoniella antarctic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig4741contigH-elongata_contig4741:275..1534 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score60.5
Seed ortholog evalue9.4e-07
Seed eggNOG ortholog3067.XP_002951899.1
EggNOG free text desc.WD domain, G-beta repeat
EggNOG OGs388PD@33090,KOG0295@1,KOG0295@2759
COG Functional cat.D
Best tax levelViridiplantae
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size531
Cds size531
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig4741.11859.1prot_H-elongata_contig4741.11859.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig4741 275..1534 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930782.8920865-CDS-H-elongata_contig4741:274..4481622930782.8920865-CDS-H-elongata_contig4741:274..448Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4741 275..448 +
1691679568.1425214-CDS-H-elongata_contig4741:274..4481691679568.1425214-CDS-H-elongata_contig4741:274..448Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4741 275..448 +
1622930782.9032617-CDS-H-elongata_contig4741:742..8021622930782.9032617-CDS-H-elongata_contig4741:742..802Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4741 743..802 +
1691679568.1527364-CDS-H-elongata_contig4741:742..8021691679568.1527364-CDS-H-elongata_contig4741:742..802Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4741 743..802 +
1622930782.9171813-CDS-H-elongata_contig4741:1035..11941622930782.9171813-CDS-H-elongata_contig4741:1035..1194Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4741 1036..1194 +
1691679568.1614566-CDS-H-elongata_contig4741:1035..11941691679568.1614566-CDS-H-elongata_contig4741:1035..1194Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4741 1036..1194 +
1622930782.93226-CDS-H-elongata_contig4741:1396..15341622930782.93226-CDS-H-elongata_contig4741:1396..1534Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4741 1397..1534 +
1691679568.1733537-CDS-H-elongata_contig4741:1396..15341691679568.1733537-CDS-H-elongata_contig4741:1396..1534Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4741 1397..1534 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig4741.11859.1

>prot_H-elongata_contig4741.11859.1 ID=prot_H-elongata_contig4741.11859.1|Name=mRNA_H-elongata_contig4741.11859.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=177bp
DHTVRLWDIVSHRCRQTFRGHVDSVNTVAWQPFSNNICTGSGDKTVSLWD
ARSGLCMQTFYGHTNAVNHVCCSIKGDMVASCDADGLVKLWDARMVAEIG
TMDAGPHPVNCVCLDRSATRLAAASNDGEVKVFDTISKTCVLELKGHEDA
VQSVLFSPADDSLVSTSSDCTFRIWS*
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mRNA from alignment at H-elongata_contig4741:275..1534+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig4741.11859.1 ID=mRNA_H-elongata_contig4741.11859.1|Name=mRNA_H-elongata_contig4741.11859.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1260bp|location=Sequence derived from alignment at H-elongata_contig4741:275..1534+ (Himanthalia elongata Himel1 dioecious)
GACCATACGGTAAGACTCTGGGACATCGTGAGTCATCGTTGCCGCCAAAC
GTTCCGGGGGCATGTCGATTCGGTAAATACTGTGGCTTGGCAGCCCTTTT
CAAACAATATCTGCACGGGGTCTGGAGACAAGACAGTCTCTCTCTGGGAT
GCGCGTTCAGGGTTGTGTATGCAGGTAGGATGCGGTTAAGGCCTTGAAAG
ATTTTGGGTACTGGTGTGGGTAATGCTAGACATTATTATGCGGCCGTAAG
GGTATGATGCTTATGGGCGTATTTTAAGGCAAGAGGTGGGAACCTTCAAC
AAGTAGATCACGAACGAAAATGCAAGACTCGCTTACTGGCGTGCACAATC
CAAATAGTGCCGCGTTCGAAATGACGCTCTTGTTTGGACCACCTTGTGAA
TATATTTTCCCTGGCGCCGACATGCACCTGATCGACAATATTATGTATTC
CGTCCTGATTCATGACAGACCTTTTACGGACATACCAACGCAGTGAACCA
CGTATGCTGCAGCATTAAGGGCGATATGGTGAGAACCCTCCTCCGTGTTG
TTATGCCACACAAATGAATGTAGTAACATGCTTTGTGGCCAGTCAGTATT
GCAACAATGTCGAACGATATTATTGGTGCTAAAGCCCGGATAAAATATGC
CTCTAAATATGCGCTTGGCAATAAGCCTACCTCGTGATTTTTCACAAGAT
TTTTCACAAGAGTTCATAAATCAAACCCAACTCCTCTTGGGTGGCATAAA
TTACAAACAAGGTGGCTTCCTGCGATGCTGATGGCCTAGTGAAGCTGTGG
GATGCTCGAATGGTGGCGGAAATAGGGACGATGGATGCCGGACCGCATCC
TGTCAATTGCGTGTGTTTGGATCGATCAGCGACGAGACTGGCCGCTGCGA
GCAACGATGGCGAGGTCAAGGTGCGAACGGGCAAGCACCGGACAATTTTT
GCTGCGCAAGGTTGCCACCAAATAATTAGGCTTCCAACAAATAGCTTCAT
ATGTCAATCTAAATATAAAGCCCCCACAGCTGGCTATGGGGAGGAGAAAC
GCTAAACCTATTGACCTTAATCTGACCAGCCCGTTGTACTGACTTTCAAA
TATGTCTGATCCAACTCCAAAGGTGTTTGATACGATATCGAAGACTTGTG
TCTTGGAGCTTAAGGGTCATGAAGATGCCGTGCAGAGCGTGCTTTTCAGT
CCTGCTGACGATAGTCTCGTATCAACCTCATCAGACTGCACGTTCAGGAT
CTGGTCGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig4741:275..1534+

>mRNA_H-elongata_contig4741.11859.1 ID=mRNA_H-elongata_contig4741.11859.1|Name=mRNA_H-elongata_contig4741.11859.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1062bp|location=Sequence derived from alignment at H-elongata_contig4741:275..1534+ (Himanthalia elongata Himel1 dioecious)
GACCATACGGTAAGACTCTGGGACATCGTGAGTCATCGTTGCCGCCAAAC
GTTCCGGGGGCATGTCGATTCGGTAAATACTGTGGCTTGGCAGCCCTTTT
CAAACAATATCTGCACGGGGTCTGGAGACAAGACAGTCTCTCTCTGGGAT
GCGCGTTCAGGGTTGTGTATGCAGGACCATACGGTAAGACTCTGGGACAT
CGTGAGTCATCGTTGCCGCCAAACGTTCCGGGGGCATGTCGATTCGGTAA
ATACTGTGGCTTGGCAGCCCTTTTCAAACAATATCTGCACGGGGTCTGGA
GACAAGACAGTCTCTCTCTGGGATGCGCGTTCAGGGTTGTGTATGCAGAC
CTTTTACGGACATACCAACGCAGTGAACCACGTATGCTGCAGCATTAAGG
GCGATATGACCTTTTACGGACATACCAACGCAGTGAACCACGTATGCTGC
AGCATTAAGGGCGATATGGTGGCTTCCTGCGATGCTGATGGCCTAGTGAA
GCTGTGGGATGCTCGAATGGTGGCGGAAATAGGGACGATGGATGCCGGAC
CGCATCCTGTCAATTGCGTGTGTTTGGATCGATCAGCGACGAGACTGGCC
GCTGCGAGCAACGATGGCGAGGTCAAGGTGGCTTCCTGCGATGCTGATGG
CCTAGTGAAGCTGTGGGATGCTCGAATGGTGGCGGAAATAGGGACGATGG
ATGCCGGACCGCATCCTGTCAATTGCGTGTGTTTGGATCGATCAGCGACG
AGACTGGCCGCTGCGAGCAACGATGGCGAGGTCAAGGTGTTTGATACGAT
ATCGAAGACTTGTGTCTTGGAGCTTAAGGGTCATGAAGATGCCGTGCAGA
GCGTGCTTTTCAGTCCTGCTGACGATAGTCTCGTATCAACCTCATCAGAC
TGCACGTTCAGGATCTGGTCGTGAGTGTTTGATACGATATCGAAGACTTG
TGTCTTGGAGCTTAAGGGTCATGAAGATGCCGTGCAGAGCGTGCTTTTCA
GTCCTGCTGACGATAGTCTCGTATCAACCTCATCAGACTGCACGTTCAGG
ATCTGGTCGTGA
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