mRNA_H-elongata_contig47376.11854.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig47376.11854.1
Unique NamemRNA_H-elongata_contig47376.11854.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig47376.11854.1 vs. uniprot
Match: D7FI07_ECTSI (GF22528 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI07_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 6.470e-19
Identity = 35/51 (68.63%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:   13 FSSSACGEHGEVTCCDGCARVFHEECLELGSDSQLAAEHQTEEDAWYCPAC 165
            F  S CGE G++TCCD C RVFHEECL +G+DS LAA HQTE+D WYCP+C
Sbjct:  312 FFCSVCGESGDITCCDQCPRVFHEECLPIGTDSHLAAHHQTEKDPWYCPSC 362
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BLAST of mRNA_H-elongata_contig47376.11854.1 vs. uniprot
Match: A0A6H5JJY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJY6_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.210e-18
Identity = 36/51 (70.59%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:   13 FSSSACGEHGEVTCCDGCARVFHEECLELGSDSQLAAEHQTEEDAWYCPAC 165
            F  SACGE G++TCCD C RVFHEECL +G+DS LAA  QTEED WYCP+C
Sbjct:  785 FFCSACGESGDLTCCDECPRVFHEECLPIGTDSHLAANRQTEEDPWYCPSC 835
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BLAST of mRNA_H-elongata_contig47376.11854.1 vs. uniprot
Match: D7FHY8_ECTSI (Trithorax 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHY8_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 1.210e-18
Identity = 36/51 (70.59%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:   13 FSSSACGEHGEVTCCDGCARVFHEECLELGSDSQLAAEHQTEEDAWYCPAC 165
            F  SACGE G++TCCD C RVFHEECL +G+DS LAA  QTEED WYCP+C
Sbjct:  885 FFCSACGESGDLTCCDECPRVFHEECLPIGTDSHLAANRQTEEDPWYCPSC 935
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BLAST of mRNA_H-elongata_contig47376.11854.1 vs. uniprot
Match: A0A6H5L4S9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4S9_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 1.070e-17
Identity = 33/48 (68.75%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:   22 SACGEHGEVTCCDGCARVFHEECLELGSDSQLAAEHQTEEDAWYCPAC 165
            S CGE G++TCCD C RVFHEECL +G++S LAA HQTE+D WYCP+C
Sbjct:  307 SVCGESGDITCCDECPRVFHEECLPIGTNSHLAAHHQTEKDPWYCPSC 354
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BLAST of mRNA_H-elongata_contig47376.11854.1 vs. uniprot
Match: A0A7S2YKC8_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YKC8_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 3.330e-8
Identity = 21/51 (41.18%), Postives = 33/51 (64.71%), Query Frame = 1 
Query:   13 FSSSACGEHGEVTCCDGCARVFHEECLELGSDSQLAAEHQTEEDAWYCPAC 165
            +  + CGE G+V CCDGC +V+H++C+ L  +   A +   +E+ WYCP C
Sbjct:   78 YYCAVCGEFGDVICCDGCPKVYHQDCIPLSHEPPNALD---DEEPWYCPVC 125
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BLAST of mRNA_H-elongata_contig47376.11854.1 vs. uniprot
Match: A0A0B7JPG6_BIOOC (PHD-type domain-containing protein n=2 Tax=Bionectria ochroleuca TaxID=29856 RepID=A0A0B7JPG6_BIOOC)

HSP 1 Score: 54.7 bits (130), Expect = 2.980e-7
Identity = 24/48 (50.00%), Postives = 28/48 (58.33%), Query Frame = 1 
Query:   22 SACGEHGEVTCCDGCARVFHEECLELGSDSQLAAEHQTEEDAWYCPAC 165
            SACG  G+V CCDGC R FH EC+++  D  L AE       WYC  C
Sbjct:  688 SACGNVGDVVCCDGCPRSFHFECVDMDRDEDLPAE-------WYCNEC 728
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BLAST of mRNA_H-elongata_contig47376.11854.1 vs. uniprot
Match: A0A168ERL1_CORFA (Zinc finger domain-containing protein, PHD-finger n=1 Tax=Cordyceps fumosorosea (strain ARSEF 2679) TaxID=1081104 RepID=A0A168ERL1_CORFA)

HSP 1 Score: 53.9 bits (128), Expect = 5.580e-7
Identity = 24/48 (50.00%), Postives = 26/48 (54.17%), Query Frame = 1 
Query:   22 SACGEHGEVTCCDGCARVFHEECLELGSDSQLAAEHQTEEDAWYCPAC 165
            SACG  G+V CCDGC R FH EC+ L  D  L        D WYC  C
Sbjct:  809 SACGNAGDVLCCDGCPRSFHFECVNLAQDEDLP-------DDWYCNEC 849
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BLAST of mRNA_H-elongata_contig47376.11854.1 vs. uniprot
Match: A0A367LRP6_9HYPO (PHD-type domain-containing protein n=1 Tax=Ophiocordyceps polyrhachis-furcata BCC 54312 TaxID=1330021 RepID=A0A367LRP6_9HYPO)

HSP 1 Score: 52.8 bits (125), Expect = 1.430e-6
Identity = 22/48 (45.83%), Postives = 27/48 (56.25%), Query Frame = 1 
Query:   22 SACGEHGEVTCCDGCARVFHEECLELGSDSQLAAEHQTEEDAWYCPAC 165
            SACG  G+V CCDGC R FH EC+++    +L        D WYC  C
Sbjct:  618 SACGNAGDVVCCDGCPRSFHFECVDMAQSDRLP-------DEWYCNEC 658
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BLAST of mRNA_H-elongata_contig47376.11854.1 vs. uniprot
Match: A0A8K0NE88_9HYPO (Uncharacterized protein n=1 Tax=Claviceps africana TaxID=83212 RepID=A0A8K0NE88_9HYPO)

HSP 1 Score: 52.8 bits (125), Expect = 1.430e-6
Identity = 23/48 (47.92%), Postives = 27/48 (56.25%), Query Frame = 1 
Query:   22 SACGEHGEVTCCDGCARVFHEECLELGSDSQLAAEHQTEEDAWYCPAC 165
            SACG  G+V CCDGC R FH EC+++    QL        D WYC  C
Sbjct:  787 SACGNTGDVVCCDGCPRSFHFECVDMVRSDQLP-------DEWYCNEC 827
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BLAST of mRNA_H-elongata_contig47376.11854.1 vs. uniprot
Match: UPI001E8E82BD (uncharacterized protein n=1 Tax=Emericellopsis atlantica TaxID=2614577 RepID=UPI001E8E82BD)

HSP 1 Score: 52.4 bits (124), Expect = 1.950e-6
Identity = 22/48 (45.83%), Postives = 26/48 (54.17%), Query Frame = 1 
Query:   22 SACGEHGEVTCCDGCARVFHEECLELGSDSQLAAEHQTEEDAWYCPAC 165
            SACG  GE+ CCDGC R FH EC+ +  +  L        D WYC  C
Sbjct:  722 SACGNAGEMVCCDGCPRAFHFECVGINPEESLP-------DEWYCSEC 762
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47376.11854.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FI07_ECTSI6.470e-1968.63GF22528 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JJY6_9PHAE1.210e-1870.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHY8_ECTSI1.210e-1870.59Trithorax 3 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5L4S9_9PHAE1.070e-1768.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2YKC8_9STRA3.330e-841.18Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A0B7JPG6_BIOOC2.980e-750.00PHD-type domain-containing protein n=2 Tax=Bionect... [more]
A0A168ERL1_CORFA5.580e-750.00Zinc finger domain-containing protein, PHD-finger ... [more]
A0A367LRP6_9HYPO1.430e-645.83PHD-type domain-containing protein n=1 Tax=Ophioco... [more]
A0A8K0NE88_9HYPO1.430e-647.92Uncharacterized protein n=1 Tax=Claviceps africana... [more]
UPI001E8E82BD1.950e-645.83uncharacterized protein n=1 Tax=Emericellopsis atl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig47376contigH-elongata_contig47376:3902..4066 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.2
Seed ortholog evalue1.3e-15
Seed eggNOG ortholog2880.D7FI07
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K09186,ko:K09188,ko:K11723,ko:K17346,ko:K22197
KEGG ReactionR03875,R03938,R04866,R04867
KEGG Pathwayko00310,ko04934,ko05202,ko05225,map00310,map04934,map05202,map05225
EggNOG free text desc.acetylation-dependent protein binding
EggNOG OGsCOG2940@1,KOG1828@1,KOG1828@2759,KOG4443@2759
EC2.1.1.43
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03000,ko03036,ko04147
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size165
Cds size165
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930782.458863-CDS-H-elongata_contig47376:3901..40661622930782.458863-CDS-H-elongata_contig47376:3901..4066Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47376 3902..4066 +
1691679567.92334-CDS-H-elongata_contig47376:3901..40661691679567.92334-CDS-H-elongata_contig47376:3901..4066Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47376 3902..4066 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig47376.11854.1prot_H-elongata_contig47376.11854.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig47376 3902..4066 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig47376.11854.1

>prot_H-elongata_contig47376.11854.1 ID=prot_H-elongata_contig47376.11854.1|Name=mRNA_H-elongata_contig47376.11854.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=55bp
MVAAFSSSACGEHGEVTCCDGCARVFHEECLELGSDSQLAAEHQTEEDAW
YCPAC
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mRNA from alignment at H-elongata_contig47376:3902..4066+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig47376.11854.1 ID=mRNA_H-elongata_contig47376.11854.1|Name=mRNA_H-elongata_contig47376.11854.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=165bp|location=Sequence derived from alignment at H-elongata_contig47376:3902..4066+ (Himanthalia elongata Himel1 dioecious)
ATGGTCGCCGCGTTTTCGAGTAGCGCCTGCGGTGAACACGGCGAAGTGAC
GTGTTGCGATGGCTGTGCTCGAGTTTTCCACGAGGAGTGCCTCGAGCTTG
GCTCCGACAGCCAGCTCGCTGCGGAGCACCAGACGGAAGAGGATGCGTGG
TATTGCCCCGCGTGC
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Coding sequence (CDS) from alignment at H-elongata_contig47376:3902..4066+

>mRNA_H-elongata_contig47376.11854.1 ID=mRNA_H-elongata_contig47376.11854.1|Name=mRNA_H-elongata_contig47376.11854.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=330bp|location=Sequence derived from alignment at H-elongata_contig47376:3902..4066+ (Himanthalia elongata Himel1 dioecious)
ATGGTCGCCGCGTTTTCGAGTAGCGCCTGCGGTGAACACGGCGAAGTGAC
GTGTTGCGATGGCTGTGCTCGAGTTTTCCACGAGGAGTGCCTCGAGCTTG
GCTCCGACAGCCAGCTCGCTGCGGAGCACCAGACGGAAGAGGATGCGTGG
TATTGCCCCGCGTGCATGGTCGCCGCGTTTTCGAGTAGCGCCTGCGGTGA
ACACGGCGAAGTGACGTGTTGCGATGGCTGTGCTCGAGTTTTCCACGAGG
AGTGCCTCGAGCTTGGCTCCGACAGCCAGCTCGCTGCGGAGCACCAGACG
GAAGAGGATGCGTGGTATTGCCCCGCGTGC
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