mRNA_H-elongata_contig47351.11847.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig47351.11847.1
Unique NamemRNA_H-elongata_contig47351.11847.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig47351.11847.1 vs. uniprot
Match: D7FIF3_ECTSI (DUF1716 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIF3_ECTSI)

HSP 1 Score: 492 bits (1266), Expect = 1.410e-171
Identity = 266/310 (85.81%), Postives = 282/310 (90.97%), Query Frame = 1
Query:   13 PVRLEDIPLEDLDEEAIARMLEEADKKDVSEVDATGVKQLLLVLERKINRNQMMRVKFPDQPARFVDSE------------------VELDEAIKSLSIVAAAPELYPALVDAGAVTSLLGLLTHENTDISISVLLLLQELTDADVLSEKEEASVIIDAIVHKQGLELLVQNLSRLDETYEEDAKGVNTTMGVLENLLEARPSLGPTLCEPPLSVLRFLLKRLQVKKFDENKLYCSEILAMLVNGDTDVQRRLGTLQGMDGIDRLLQIVAYYRRRQPQSPEEEECVENLFDALAAALLVPDNQARFRYGE 888
            PVR ED+ LEDLDEEAIARMLEEADK++VSE+DATGVKQLLL+LERKINRNQMMRVKFP+QPARFVDSE                  VELD AIKSLS+VAAAPELYPALVDAGAV SLLGLLTH+NTDISI+VLLLLQELTD+DVLSE+EEASVI+DAIV K GLELLVQNLSRLDE+ EEDAKGVNTTMGVLENLLEARP+LGPTLCEPP+SVLRFLLKRLQVKKFDENKLYCSEILAMLVNGDTDVQ+RLG LQGMDGIDRLLQIVAYYRRRQPQSPEEEECVENLFDALAAALLVPDNQ RFR GE
Sbjct:   89 PVRFEDMALEDLDEEAIARMLEEADKEEVSELDATGVKQLLLLLERKINRNQMMRVKFPEQPARFVDSEKRRQEGYVCCWRGGPASEVELDAAIKSLSVVAAAPELYPALVDAGAVNSLLGLLTHDNTDISITVLLLLQELTDSDVLSEREEASVIVDAIVDKLGLELLVQNLSRLDESNEEDAKGVNTTMGVLENLLEARPTLGPTLCEPPMSVLRFLLKRLQVKKFDENKLYCSEILAMLVNGDTDVQKRLGLLQGMDGIDRLLQIVAYYRRRQPQSPEEEECVENLFDALAAALLVPDNQQRFRKGE 398          
BLAST of mRNA_H-elongata_contig47351.11847.1 vs. uniprot
Match: A0A6H5KS61_9PHAE (DUF1716 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS61_9PHAE)

HSP 1 Score: 493 bits (1269), Expect = 6.540e-169
Identity = 263/295 (89.15%), Postives = 280/295 (94.92%), Query Frame = 1
Query:   13 PVRLEDIPLEDLDEEAIARMLEEADKKDVSEVDATGVKQLLLVLERKINRNQMMRVKFPDQPARFVDSE---VELDEAIKSLSIVAAAPELYPALVDAGAVTSLLGLLTHENTDISISVLLLLQELTDADVLSEKEEASVIIDAIVHKQGLELLVQNLSRLDETYEEDAKGVNTTMGVLENLLEARPSLGPTLCEPPLSVLRFLLKRLQVKKFDENKLYCSEILAMLVNGDTDVQRRLGTLQGMDGIDRLLQIVAYYRRRQPQSPEEEECVENLFDALAAALLVPDNQARFRYGE 888
            PVR ED+ LEDLDEEAIA+MLEEADK++VSE+DATGVKQLLL LERKINRNQMMRVKFP+QPA+FVDSE   VELD AIKSLS+VAAAPELYPA VDAGAV SLLGLLTH+NTDISI+VLLLLQELTD+DVLSE+EEA VI+DAIV K GLELLVQNLSRLDE+ EEDAKGVNTTMGVLENLLEARP+LGPTLCEPP+SVLRFLLKRLQVKKFDENKLYCSEILAMLVNGDTDVQ+RLGTLQGMDGIDRLLQIVAYYRRRQPQSPEEEECVENLFDALAAALLVPDNQ RFR GE
Sbjct:   89 PVRFEDMALEDLDEEAIAKMLEEADKEEVSELDATGVKQLLLQLERKINRNQMMRVKFPEQPAKFVDSEASKVELDAAIKSLSVVAAAPELYPAFVDAGAVNSLLGLLTHDNTDISITVLLLLQELTDSDVLSEREEAMVIVDAIVDKLGLELLVQNLSRLDESNEEDAKGVNTTMGVLENLLEARPTLGPTLCEPPMSVLRFLLKRLQVKKFDENKLYCSEILAMLVNGDTDVQKRLGTLQGMDGIDRLLQIVAYYRRRQPQSPEEEECVENLFDALAAALLVPDNQQRFRKGE 383          
BLAST of mRNA_H-elongata_contig47351.11847.1 vs. uniprot
Match: A0A835YND4_9STRA (Catenin-beta-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YND4_9STRA)

HSP 1 Score: 348 bits (894), Expect = 8.520e-111
Identity = 186/291 (63.92%), Postives = 230/291 (79.04%), Query Frame = 1
Query:   16 VRLEDIPLEDLDEEAIARMLEEADKKDVSEVDATGVKQLLLVLERKINRNQMMRVKFPDQPARFVDSEVELDEAIKSLSIVAAAPELYPALVDAGAVTSLLGLLTHENTDISISVLLLLQELTDADVLSEKEEASVIIDAIVHKQGLELLVQNLSRLDETYEEDAKGVNTTMGVLENLLEARPSLGPTLCEPPLSVLRFLLKRLQVKKFDENKLYCSEILAMLVNGDTDVQRRLGTLQGMDGIDRLLQIVAYYRRRQPQSPEEEECVENLFDALAAALLVPDNQARFRYGE 888
            V +E + LEDLDEE IARMLEEADK+ V+E+D  G++QLL  LER+I  NQ +R++ PD+P +FV+SEV+LDEAIKSL +VA APE YP LV+ GAVTSLLGLLTH+NTDISIS + LLQ++TDADV+ E   A  ++DA+V   GL LLVQNLSRLDE+ E+DA+GV  TMGVLENLLE +PSLGP LCE   S+L +LLKR++ K FD+NKLY SE+L ML N DT +QRRLG + G+DG+D+LLQ  A YRR++P +PEEEECVENLF  LAA  LV  NQ RFR+ E
Sbjct:   75 VDVEGLSLEDLDEETIARMLEEADKEQVNELDVHGLRQLLATLERRIVANQRLRIRHPDEPDKFVESEVDLDEAIKSLQVVATAPEFYPRLVEHGAVTSLLGLLTHDNTDISISAITLLQDVTDADVVME---AVCVVDAVVEAHGLALLVQNLSRLDESNEDDARGVYATMGVLENLLEVKPSLGPVLCEDT-SMLSWLLKRVKAKTFDDNKLYASELLNMLANSDTAIQRRLGDVGGVDGVDQLLQACAPYRRKEPSTPEEEECVENLFGTLAATQLVAGNQTRFRHSE 361          
BLAST of mRNA_H-elongata_contig47351.11847.1 vs. uniprot
Match: K8Z7J8_NANGC (Beta-catenin-like protein 1 n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z7J8_NANGC)

HSP 1 Score: 298 bits (764), Expect = 2.100e-95
Identity = 162/285 (56.84%), Postives = 211/285 (74.04%), Query Frame = 1
Query:   40 EDLDEEAIARMLEEADKK-DVSEVDATGVKQLLLVLERKINRNQMMRVKFPDQPARFVDSEVELDEAIKSLSIVAAAPELYPALVDAGAVTSLLGLLTHENTDISISVLLLLQELTDADVLSEKE-EASVIIDAIVHKQGLELLVQNLSRLDETYEEDAKGVNTTMGVLENLLEARPSLGPTLCEPPLSVLRFLLKRLQVKKFDENKLYCSEILAMLVNGDTDVQRRLGTLQGMDGIDRLLQIVAYYRRRQPQSPEEEECVENLFDALAAALLVPDNQARFRYGE 888
            +D+DEE I R+L+ ADK+ DV E+D  GVK+L L LER+I  N + RVKF D+PA+F++SE+EL E I     VAAAP LYP LV      +LLGL+THENTDISIS+L  L E+TD DV+ E E EA  ++DA+V K GLEL+VQNL RLDE+ EED +GVN T+ ++ENL+  RPSL P +CE   S LR LL R++ K+FD+ K YC+E+L++L+  DT+ QRRLG L  ++G+D LLQ +AYYRRR    PEE+EC+ENLFDAL + LL+P+NQARFR  E
Sbjct:   14 DDIDEETIKRILQVADKQQDVVELDLPGVKKLFLGLERRIQANLLKRVKFADEPAKFLESELELYEEIGQFKAVAAAPSLYPELVKLDVANTLLGLVTHENTDISISMLGCLAEMTDPDVVLEAEKEAGTLLDALVEKNGLELVVQNLKRLDESREEDVRGVNYTLQLIENLVTVRPSLAPLICEKT-SFLRVLLTRVKAKRFDDVKAYCAELLSILLAADTENQRRLGQLADINGMDTLLQAIAYYRRRDASCPEEKECIENLFDALCSCLLLPENQARFRQSE 297          
BLAST of mRNA_H-elongata_contig47351.11847.1 vs. uniprot
Match: A0A7R9SLF6_9CRUS (Hypothetical protein (Fragment) n=1 Tax=Argulus foliaceus TaxID=509924 RepID=A0A7R9SLF6_9CRUS)

HSP 1 Score: 244 bits (624), Expect = 2.990e-73
Identity = 135/289 (46.71%), Postives = 204/289 (70.59%), Query Frame = 1
Query:   28 DIPLEDLDEEAIARMLEEADKKDVSEVDATGVKQLLLVLERKINRNQMMRVKFPDQPARFVDSEVELDEAIKSLSIVAAAPELYPALVDAGAVTSLLGLLTHENTDISISVLLLLQELTDADVLSEKEE-ASVIIDAIVHKQGLELLVQNLSRLDETYEEDAKGVNTTMGVLENLLEARPSLGPTLCEPPLSVLRFLLKRLQVK-KFDENKLYCSEILAMLVNGDTDVQRRLGTLQGMDGIDRLLQIVAYYRRRQPQSPEEEECVENLFDALAAALLVPDNQARFRYGE 888
            DIP ED D + + ++LE+ D  ++  +D   +K++LL  E+++ +NQ +R+KFPD P +F++SE+EL+EA++ L  VA AP+LY  LVD   + S++GLL+HENTDISI+V+ L+QELTD D L+E EE A+V+I+ ++  Q   LLVQN+ RLDE+  E+  GV+ T+G++EN+LE +P +  T  +  L  L++LLKR +VK  FD NKLYC EIL++L+   ++ ++ +G    MDGID LLQ +A+Y+R  P S EE E +ENLFD L + L++P N+ +F  GE
Sbjct:   78 DIPAEDDDLKKVVQLLEQDDNPEI--LDEGALKKMLLTFEKRVLKNQELRIKFPDMPEKFMESEIELNEAVQELHAVATAPDLYSILVDLNVIGSIMGLLSHENTDISIAVVDLIQELTDVDTLNESEEGANVLIECLLDHQICALLVQNVERLDESVREENDGVHNTLGIIENILEFKPDVCVTFAQQGL--LQWLLKRQKVKVPFDGNKLYCGEILSILLQESSETKKMIGD---MDGIDILLQQLAFYKRHDPNSAEEYEFMENLFDCLCSCLMLPANRDKFLKGE 359          
BLAST of mRNA_H-elongata_contig47351.11847.1 vs. uniprot
Match: A0A484MX05_9ASTE (DUF1716 domain-containing protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484MX05_9ASTE)

HSP 1 Score: 238 bits (607), Expect = 8.310e-73
Identity = 127/274 (46.35%), Postives = 187/274 (68.25%), Query Frame = 1
Query:   58 AIARMLEEADKKDVSEVDATGVKQLLLVLERKINRNQMMRVKFPDQPARFVDSEVELDEAIKSLSIVAAAPELYPALVDAGAVTSLLGLLTHENTDISISVLLLLQELTDADVLSEKEE-ASVIIDAIVHKQGLELLVQNLSRLDETYEEDAKGVNTTMGVLENLLEARPSLGPTLCEPPLSVLRFLLKRLQVKKFDENKLYCSEILAMLVNGDTDVQRRLGTLQGMDGIDRLLQIVAYYRRRQPQSPEEEECVENLFDALAAALLVPDNQARF 876
            ++   LE++ +  V  +D   VK+L+L  ER++  N   R+K+PDQP +FVDSE+EL + I+ L ++A  PE YP LV+ G V S+  L+ HENTDISI V+ LLQ+LTD DVL + +E A V++DA++    LELLVQNLSRL +T  +++  +  T+  +EN +E +PS+   +CE    ++++LL RL+VK+FD NK Y SEILA+L+   T  Q+RLG    M+G+D +LQ VA Y+ + P+SP+EEE VENLFD+L   L+  +N+ RF
Sbjct:   40 SLLEALEKSQQVAVEALDQKTVKKLVLSFERRLKENIAARLKYPDQPDKFVDSEMELHDEIQKLKVMAGGPEFYPDLVNLGTVASITSLINHENTDISIDVIGLLQDLTDEDVLEDNDEPAQVLVDALIENNALELLVQNLSRLSDTDPDESAAIYNTLATIENFIEVKPSVAELVCERT-KLMKWLLSRLKVKEFDSNKQYASEILAILLQSSTANQKRLGQ---MNGVDTILQAVAAYKSKDPKSPDEEEMVENLFDSLCCLLMPLENKERF 309          
BLAST of mRNA_H-elongata_contig47351.11847.1 vs. uniprot
Match: A0A8J6JZK2_ELECQ (DUF1716 domain-containing protein n=3 Tax=Hyloidea TaxID=8417 RepID=A0A8J6JZK2_ELECQ)

HSP 1 Score: 239 bits (610), Expect = 1.640e-71
Identity = 133/271 (49.08%), Postives = 190/271 (70.11%), Query Frame = 1
Query:   82 ADKKDVSEVDATGVKQLLLVLERKINRNQMMRVKFPDQPARFVDSEVELDEAIKSLSIVAAAPELYPALVDAGAVTSLLGLLTHENTDISISVLLLLQELTDADVLSEKEE-ASVIIDAIVHKQGLELLVQNLSRLDETYEEDAKGVNTTMGVLENLLEARPSLGPTLCEPPLSVLRFLLKRLQVK-KFDENKLYCSEILAMLVNGDTDVQRRLGTLQGMDGIDRLLQIVAYYRRRQPQSPEEEECVENLFDALAAALLVPDNQARFRYGE 888
            AD +DV  VD   VK+++L  E++  +NQ +R+KFPD P +F++SE++L++ I+ + ++A  P+LY  LV+  AV SLLGLL HENTD+ I+V+ LLQELTD D L E EE A V+ID++V  Q + LLVQNL RLDET +E+A GV+ T+ ++EN+ E RP +     +  L  L++LLKRL+ K  FD NKLYCSEILA+L+  + D +  LG L   DGID LLQ ++ ++R  P + EE+E +ENLFDAL + L++ +N+ RF  GE
Sbjct:   62 ADDEDVEPVDEGAVKRMILTFEKRSYKNQELRIKFPDNPEKFMESELDLNDIIQEMHVIATIPDLYHLLVELNAVQSLLGLLGHENTDVCIAVVDLLQELTDIDTLHESEEGAQVLIDSLVEGQVIALLVQNLDRLDETVKEEADGVHNTLAIIENMTEFRPEICSDAAQQGL--LQWLLKRLKAKLPFDANKLYCSEILAILLQNNDDTRELLGEL---DGIDVLLQQLSVFKRHDPSTAEEQEMMENLFDALCSCLMLSNNRDRFLKGE 327          
BLAST of mRNA_H-elongata_contig47351.11847.1 vs. uniprot
Match: A0A176W914_MARPO (DUF1716 domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176W914_MARPO)

HSP 1 Score: 238 bits (607), Expect = 3.550e-71
Identity = 130/271 (47.97%), Postives = 191/271 (70.48%), Query Frame = 1
Query:   70 MLEEADKKDVSEV-DATGVKQLLLVLERKINRNQMMRVKFPDQPARFVDSEVELDEAIKSLSIVAAAPELYPALVDAGAVTSLLGLLTHENTDISISVLLLLQELTDADVLSEKEE-ASVIIDAIVHKQGLELLVQNLSRLDETYEEDAKGVNTTMGVLENLLEARPSLGPTLCEPPLSVLRFLLKRLQVKKFDENKLYCSEILAMLVNGDTDVQRRLGTLQGMDGIDRLLQIVAYYRRRQPQSPEEEECVENLFDALAAALLVPDNQARF 876
            +LE  +  +V EV D  G+K+++L  ERK+  N   R+K+ DQP +FV+SEV+LDE IK +  +AAAP+LYP LV   AV+S+LGLL+HENTDI+I V+ LL +LTD DV+ E +E A +++DA++    LELL+QNL+RLDE   ++   V  T+ ++EN++E +P +   +CE    +LR+LL RL+V++FD NKLY SEILA+L+   T  QRRLG L   +G+D +LQ VA Y+ R P++ +EEE +ENLFD L + ++  +N+ RF
Sbjct:   52 LLEALESSEVVEVIDVRGLKKIVLGFERKLRDNLEARMKYMDQPDKFVESEVDLDEEIKKMHSLAAAPDLYPELVRLNAVSSILGLLSHENTDIAIGVVDLLNDLTDEDVIGESDEPALILVDALIENNALELLIQNLARLDEADSDEGTAVFNTLSIVENMIEVKPQVAELVCERT-KLLRWLLTRLKVREFDVNKLYASEILAILLQNSTINQRRLGQL---NGVDTILQAVAMYKSRDPKTTDEEEMLENLFDCLCSVVMPTENKDRF 318          
BLAST of mRNA_H-elongata_contig47351.11847.1 vs. uniprot
Match: A0A4Y2IPH2_ARAVE (Beta-catenin-like protein 1 n=3 Tax=Entelegynae TaxID=74971 RepID=A0A4Y2IPH2_ARAVE)

HSP 1 Score: 237 bits (604), Expect = 5.010e-71
Identity = 128/263 (48.67%), Postives = 192/263 (73.00%), Query Frame = 1
Query:  106 VDATGVKQLLLVLERKINRNQMMRVKFPDQPARFVDSEVELDEAIKSLSIVAAAPELYPALVDAGAVTSLLGLLTHENTDISISVLLLLQELTDADVLSEKEE-ASVIIDAIVHKQGLELLVQNLSRLDETYEEDAKGVNTTMGVLENLLEARPSLGPTLCEPPLSVLRFLLKRLQVKK-FDENKLYCSEILAMLVNGDTDVQRRLGTLQGMDGIDRLLQIVAYYRRRQPQSPEEEECVENLFDALAAALLVPDNQARFRYGE 888
            +D T +K+LLL  E+K+ +NQ +R+KFPDQP +F+DSE+EL++ I  + I+A  P+LY  LV+  +V+S+LGLLTH+NTDISI+V+ LLQE+TD D L+E EE A+ +IDA++  Q + LLVQNL RLDE+ +E+A+GV+ T+ ++ENL E +P +     E  L  ++++LKR++ K  FD NKLYCSEIL++L+    + ++ LG+++G   ID LLQ +AY++R  P + EE E +ENLFD L ++L+ P N+ RF  GE
Sbjct:   32 LDETNLKKLLLAFEKKVLKNQELRIKFPDQPEKFMDSEIELNDIIIEMHIIATQPDLYHILVELNSVSSILGLLTHDNTDISIAVVDLLQEMTDIDTLNESEEGAASLIDAMLEAQVVALLVQNLERLDESVKEEAEGVHNTLAIIENLAEFKPDMCVDATEQGL--MQWILKRIKAKMPFDANKLYCSEILSILLQRHDENRQALGSIEG---IDVLLQQLAYFKRNDPSNTEEHEMMENLFDCLCSSLMFPANRERFLKGE 289          
BLAST of mRNA_H-elongata_contig47351.11847.1 vs. uniprot
Match: A0A200PQA4_9MAGN (Beta-catenin-like protein 1 n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200PQA4_9MAGN)

HSP 1 Score: 232 bits (591), Expect = 9.470e-71
Identity = 128/265 (48.30%), Postives = 180/265 (67.92%), Query Frame = 1
Query:   97 VSEVDATGVKQLLLVLERKINRNQMMRVKFPDQPARFVDSEVELDEAIKSLSIVAAAPELYPALVDAGAVTSLLGLLTHENTDISISVLLLLQELTDADVLSEKEE-ASVIIDAIVHKQGLELLVQNLSRLDETYEEDAKGVNTTMGVLENLLEARPSLGPTLCEPPLSVLRFLLKRLQVKKFDENKLYCSEILAMLVNGDTDVQRRLGTLQGMDGIDRLLQIVAYYRRRQPQSPEEEECVENLFDALAAALLVPDNQARFRYGE 888
            V  +D   +K+L+L  ER++  N   R+K+PDQP RF DSE+EL E I+ L I+A APELYP LV+   V S+LGLL HENTDI+I V+ LLQ+LTD DVL + +E A +++D++V    LELLVQNL RL ET  ++   V  T+  +EN++E +P++   +CE    +LR+LL +++V++FD NK Y SEILA+L+   T  Q+RLG    M+G+D +LQ VA Y+ R P+S +EEE VENLFD L   L+  +N+ RF   E
Sbjct:   45 VEVLDLKTLKKLVLSFERRLKDNIEARLKYPDQPDRFADSEIELHEEIEKLKILAGAPELYPELVNLNTVQSILGLLGHENTDIAIDVVGLLQDLTDEDVLEDNDEPARILVDSLVENNALELLVQNLGRLSETDPDEMTAVYNTLATIENMIEIKPAVAELVCERT-KLLRWLLGKIKVREFDSNKQYASEILAILLQNSTANQKRLGQ---MNGVDVVLQAVALYKSRDPRSSDEEEMVENLFDCLCCLLMPVENKERFMKAE 305          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47351.11847.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIF3_ECTSI1.410e-17185.81DUF1716 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5KS61_9PHAE6.540e-16989.15DUF1716 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A835YND4_9STRA8.520e-11163.92Catenin-beta-like protein n=1 Tax=Tribonema minus ... [more]
K8Z7J8_NANGC2.100e-9556.84Beta-catenin-like protein 1 n=1 Tax=Nannochloropsi... [more]
A0A7R9SLF6_9CRUS2.990e-7346.71Hypothetical protein (Fragment) n=1 Tax=Argulus fo... [more]
A0A484MX05_9ASTE8.310e-7346.35DUF1716 domain-containing protein n=1 Tax=Cuscuta ... [more]
A0A8J6JZK2_ELECQ1.640e-7149.08DUF1716 domain-containing protein n=3 Tax=Hyloidea... [more]
A0A176W914_MARPO3.550e-7147.97DUF1716 domain-containing protein n=2 Tax=Marchant... [more]
A0A4Y2IPH2_ARAVE5.010e-7148.67Beta-catenin-like protein 1 n=3 Tax=Entelegynae Ta... [more]
A0A200PQA4_9MAGN9.470e-7148.30Beta-catenin-like protein 1 n=1 Tax=Macleaya corda... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig47351contigH-elongata_contig47351:221..4065 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score495.0
Seed ortholog evalue2.5e-137
Seed eggNOG ortholog2880.D7FIF3
KEGG koko:K12864
KEGG Pathwayko03040,map03040
KEGG ModuleM00353
EggNOG free text desc.somatic diversification of immunoglobulins
EggNOG OGsKOG2734@1,KOG2734@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Hectar predicted targeting categoryother localisation
Exons7
Model size888
Cds size888
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930781.739272-CDS-H-elongata_contig47351:220..4391622930781.739272-CDS-H-elongata_contig47351:220..439Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47351 221..439 +
1691679567.6022263-CDS-H-elongata_contig47351:220..4391691679567.6022263-CDS-H-elongata_contig47351:220..439Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47351 221..439 +
1622930781.7623532-CDS-H-elongata_contig47351:926..10491622930781.7623532-CDS-H-elongata_contig47351:926..1049Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47351 927..1049 +
1691679567.6123722-CDS-H-elongata_contig47351:926..10491691679567.6123722-CDS-H-elongata_contig47351:926..1049Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47351 927..1049 +
1622930781.7799149-CDS-H-elongata_contig47351:1411..15191622930781.7799149-CDS-H-elongata_contig47351:1411..1519Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47351 1412..1519 +
1691679567.6204307-CDS-H-elongata_contig47351:1411..15191691679567.6204307-CDS-H-elongata_contig47351:1411..1519Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47351 1412..1519 +
1622930781.8000724-CDS-H-elongata_contig47351:2029..21341622930781.8000724-CDS-H-elongata_contig47351:2029..2134Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47351 2030..2134 +
1691679567.6293554-CDS-H-elongata_contig47351:2029..21341691679567.6293554-CDS-H-elongata_contig47351:2029..2134Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47351 2030..2134 +
1622930781.8166468-CDS-H-elongata_contig47351:2596..27711622930781.8166468-CDS-H-elongata_contig47351:2596..2771Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47351 2597..2771 +
1691679567.6386254-CDS-H-elongata_contig47351:2596..27711691679567.6386254-CDS-H-elongata_contig47351:2596..2771Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47351 2597..2771 +
1622930781.836523-CDS-H-elongata_contig47351:3280..33511622930781.836523-CDS-H-elongata_contig47351:3280..3351Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47351 3281..3351 +
1691679567.6480997-CDS-H-elongata_contig47351:3280..33511691679567.6480997-CDS-H-elongata_contig47351:3280..3351Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47351 3281..3351 +
1622930781.8565075-CDS-H-elongata_contig47351:3978..40651622930781.8565075-CDS-H-elongata_contig47351:3978..4065Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47351 3979..4065 +
1691679567.657077-CDS-H-elongata_contig47351:3978..40651691679567.657077-CDS-H-elongata_contig47351:3978..4065Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47351 3979..4065 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig47351.11847.1prot_H-elongata_contig47351.11847.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig47351 221..4065 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig47351.11847.1

>prot_H-elongata_contig47351.11847.1 ID=prot_H-elongata_contig47351.11847.1|Name=mRNA_H-elongata_contig47351.11847.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=296bp
MCAPPVRLEDIPLEDLDEEAIARMLEEADKKDVSEVDATGVKQLLLVLER
KINRNQMMRVKFPDQPARFVDSEVELDEAIKSLSIVAAAPELYPALVDAG
AVTSLLGLLTHENTDISISVLLLLQELTDADVLSEKEEASVIIDAIVHKQ
GLELLVQNLSRLDETYEEDAKGVNTTMGVLENLLEARPSLGPTLCEPPLS
VLRFLLKRLQVKKFDENKLYCSEILAMLVNGDTDVQRRLGTLQGMDGIDR
LLQIVAYYRRRQPQSPEEEECVENLFDALAAALLVPDNQARFRYGE
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mRNA from alignment at H-elongata_contig47351:221..4065+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig47351.11847.1 ID=mRNA_H-elongata_contig47351.11847.1|Name=mRNA_H-elongata_contig47351.11847.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3845bp|location=Sequence derived from alignment at H-elongata_contig47351:221..4065+ (Himanthalia elongata Himel1 dioecious)
ATGTGTGCTCCTCCGGTCAGGCTGGAAGACATACCGCTGGAAGATCTTGA CGAGGAAGCGATCGCGCGAATGCTGGAGGAGGCCGACAAGAAGGATGTGT CGGAGGTGGATGCCACCGGGGTGAAGCAGCTCTTGCTGGTGCTGGAACGA AAGATCAATCGCAACCAAATGATGCGCGTCAAGTTTCCCGACCAGCCGGC GCGGTTCGTCGACTCGGAGGTGTGGGTGATAGAATCTATGTATACCATGT CGACAAAATTTTGGCTGGTTCAGTGATTGTTACACAGCTCGTTTTCGGAC TGAGCCTGCTGTCAAGAGTAAAAGCACAGAGGAGGGGGGATTCTGTCGAA GGGTTTCCTAAATTGGACTGGGGCGTGTTGCGTCCCGGGTGATATTTACT GTATGTAACACAAAGCATTGTATGTAATGCGGTGGTCCGGTCCTATTAGC TTCTGCTCAATGGCGTCATATTGTCTCTTGTTATCTGCTTGCGCACATGG CAAACCAGTGCCATACAAAAAATGTGACACTTCATTAAAGTAATGGGGGG CGCGACGATCTCCTTTCTCCGGCTGCATCACGTTGCCGTTGCCGTTGTTA AACCAAACGACCGCGTTGCACCTGCGGAGTATCGCGACAGCTATAGCCAC CCCCTCCAGCTCTCGCGGCTCTTGTCCCTCATCGCCTATCGTTCGTTCGC GCGCAGGTAGAGCTTGACGAGGCGATCAAAAGCCTTTCGATTGTGGCCGC AGCGCCCGAACTGTACCCCGCCCTAGTCGACGCTGGGGCCGTGACGTCAT TACTAGGGCTCCTGACACACGAGAACACGGTGAGTCGTGAGGCGCGCGTC AATCATATGCAGTGTCGAAGGTTTCAAAATATACGGATTTATGGCATACC ATTTTTGTCGATGGGGGCGTGGAGGGCGATCGCGAAACAACTGGGTTTGG ATCATTTTCCGTTAAGCTTATCGCATCTTTCAGTCGCTTGTTTGCAAGAT GTCGTTTTTTTCCCGAGCATAATTATTATGCGCCAGTACCGTTTCCTTTT GCATTGGAGAGTACGTTGAACGTTTTTTCCTTTCGAGTGGTGGTTTTTCT ACCTTGTGACCACGGGCTGGATTTTGGCATCAGCTTATGTGAGAATTCAA TCAAAATCAATCATCGATCATTAATCAATGAACCTCAACAGGATATCTCC ATCTCGGTGCTTTTGCTGCTGCAAGAGCTGACGGACGCCGACGTCCTCAG CGAGAAAGAGGAGGCATCGGTGATAATCGATGCTATCGTTCACAAGCAGG TGCTAGCCTTCGCCTTGTACTACACGCTCTACTTCAAAGCAGGCGATTTC GACGGAAGATATAGCTCAATACCCCGCGGCGCTCGCCCGTGCAGACCATA CCCTTGCGGCACTAACTGTACCTTTTTGTATATAGTGTACCTTCTGTACC TTTTGTATGTAGTGTACCTTCTGGGCACGTACGATATATGTACATGTATA TATAAGTTTAAGTATATATATATATGCGCGAATGTACCTATTGGGTTCGC ACTGTATATGTTTTTCTCGTATTATGCCTTTTTTTTTTGTACGTGCTTTG CGCGAACTGTACCTTTTTTATACCTCATTGGTCACAGTGTACCCTTTTCG TTAAATGGAGCAGGTGGAGAGGCAACCACTACTGTGTGTGACTGTGTGTG TGTATGTGTTTGAGTTTGGGGTCCTTGCTTCGTTAGCCGAAACGTTTTTT GTGCGTCGCCCTTCCGTGTGTCTTCTGTCTGCCGTACCTCCCCTCTCCGG GGTATATAGGGCCTCGAGCTTTTGGTTCAAAACCTGTCTCGACTCGACGA GACGTACGAAGAGGACGCAAAGGGAGTGAACACCACCATGGGCGTGCTTG AAAACCTTCTCGAGGTGGGCAGGGTCCAAGCGCTTGCGGAGTGGTCACCG CGCAGTGCCTTCAGTACAGCGCCATGCCATGATAGATATCACTGATTTGC TACTCGTGTCTACATGATGTCATCGTCAACCACATTCTGCCTGATGCGTT GGACTTTTTGTCATTGCAGACCGCCATCAGTTGGTTCTATGTTGTGGTTG GGCCTGGCGCTTCTACGGGAGGTTATTTCGGGAGAACATTAACTCTGCAC GGAGGCGTTCGCGTAGGGGGGAGAAGCGAAGCGAAGAAGAGTGGCGAATG TTTTATGGTGTTCTGAGCACAAATCTCACGGAGTAGGCTTTCGGCGTGTT ACGGATGGCCAGCCTGGTATGGGCTCGGCGAGACGCCTCACCAAGGTCCC GCGTTCCCTTTGAGTCTCAGGCGCTCAATGTTTTAGCTCTAATTTTACGT CTCTTCTACATTCTCGATGTCCACAGGCTCGACCAAGCTTGGGGCCGACC CTGTGCGAGCCGCCGCTGAGCGTGTTGCGATTTCTGTTAAAGAGGCTGCA GGTGAAAAAATTCGACGAGAACAAGCTCTACTGCTCCGAGATCCTGGCCA TGCTGGTGAACGGCGATACCGACGTCCAGAGAAGGCTCGGAACTCTCCAG GGTAAGTCCACGTGGGTACGGCACGGCACAGCACAGCACAGCTCCCTGCT TAAGTATCCCTTCGAGTGTAACGGATTTTGAGTACGAATTACGTCGTAGT CGAATATTATTGTATGTACCTGCGATAAAATAATGAAGCGGTGTGGATGT TCGGAGAGTTAGAATGAGCCTAAAGTCTTTTAAATAAAAATAATGAAGCG CTTGCTGCGGCAAAGGACTGGGCCACATATGTAGCTTTGAGACATTGCGG TGCCCATGACTATGGTGTTGGGAGGAGATGGCACAACTGTAATGCAGACA TTAGCTGGAACATACTAGAAAATTGATCTTTCTCCTGCAGCCTAGCCTGT GTGTAGGCTTTTAACGCCTTCGTCGTATATGGGGGCTCTCGATGACCGAT ACCGTTTCCGTGTTCCCTTCTAGCGGCGATCCCTTGGGGTACGCTTGACC GCTCATCCTGTCTCGCCCAATATCTCTTGCGCCTGTCGGGTGCTGGTCTG GTTGGTTCAGGGATGGACGGTATCGACAGGCTTTTGCAGATCGTGGCGTA CTACCGCCGCCGCCAGCCTCAATCTCCAGAGGTACATTCGTTACTCTCGA CACTGCAATGCAACCCTCAACTAATATTAAACTGCGTTATACTAAGCTAT GCTTTTCTCTCTATACTTTCTGATTTAGTACCCTAAACTGTAATATAATA TACTTACGCAAATAAAACGGTTTCCTTCGCGGCCCTTCACCAAGTGACGC CGCGAAATTTTGTCGAAAACTCCGAACGTCCATCGCACGTCACCCCATAC ACTCTCGCTATTGGTAGCACTCGCTGACGCATTGACACTGCCGTTGATGA CCCTCGATATACGAACGCTAAAATCAACCAACCAACTTTGCTCCTTCTTC TTGATGTCGGAAGTCGTTAGTGCAGTATTCATAAGATTCCCTCGCATCCG TGCGCTATGTCGCTCGAGTGACATTCTGGTCGAGGAACAGGGCGCGCAAG AAAAACGTTTGTAGTTTTACACCCCCCCCCCCCCCCCCCCCCCCCCCCCA AAACCTCCCTCAGGGAAAGAGGGGGGGGGAACCACTCCGTGCCCCCCTCG CCGCCCCCNNNNNNNNNNGACATTCTGGTCGAGGAACAGGGCGCGCAAAA AAAACGTTTGTAGTTTTACACCCCCCCCCCCTCCCCTTCTCCCAATGAAT GCCTGCAGGAAGAAGAGTGCGTGGAAAACCTGTTCGATGCCCTGGCCGCG GCCCTCTTGGTTCCGGACAACCAGGCCAGATTTCGCTACGGTGAG
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Coding sequence (CDS) from alignment at H-elongata_contig47351:221..4065+

>mRNA_H-elongata_contig47351.11847.1 ID=mRNA_H-elongata_contig47351.11847.1|Name=mRNA_H-elongata_contig47351.11847.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1776bp|location=Sequence derived from alignment at H-elongata_contig47351:221..4065+ (Himanthalia elongata Himel1 dioecious)
ATGTGTGCTCCTCCGGTCAGGCTGGAAGACATACCGCTGGAAGATCTTGA
CGAGGAAGCGATCGCGCGAATGCTGGAGGAGGCCGACAAGAAGGATGTGT
CGGAGGTGGATGCCACCGGGGTGAAGCAGCTCTTGCTGGTGCTGGAACGA
AAGATCAATCGCAACCAAATGATGCGCGTCAAGTTTCCCGACCAGCCGGC
GCGGTTCGTCGACTCGGAGATGTGTGCTCCTCCGGTCAGGCTGGAAGACA
TACCGCTGGAAGATCTTGACGAGGAAGCGATCGCGCGAATGCTGGAGGAG
GCCGACAAGAAGGATGTGTCGGAGGTGGATGCCACCGGGGTGAAGCAGCT
CTTGCTGGTGCTGGAACGAAAGATCAATCGCAACCAAATGATGCGCGTCA
AGTTTCCCGACCAGCCGGCGCGGTTCGTCGACTCGGAGGTAGAGCTTGAC
GAGGCGATCAAAAGCCTTTCGATTGTGGCCGCAGCGCCCGAACTGTACCC
CGCCCTAGTCGACGCTGGGGCCGTGACGTCATTACTAGGGCTCCTGACAC
ACGAGAACACGGTAGAGCTTGACGAGGCGATCAAAAGCCTTTCGATTGTG
GCCGCAGCGCCCGAACTGTACCCCGCCCTAGTCGACGCTGGGGCCGTGAC
GTCATTACTAGGGCTCCTGACACACGAGAACACGGATATCTCCATCTCGG
TGCTTTTGCTGCTGCAAGAGCTGACGGACGCCGACGTCCTCAGCGAGAAA
GAGGAGGCATCGGTGATAATCGATGCTATCGTTCACAAGCAGGATATCTC
CATCTCGGTGCTTTTGCTGCTGCAAGAGCTGACGGACGCCGACGTCCTCA
GCGAGAAAGAGGAGGCATCGGTGATAATCGATGCTATCGTTCACAAGCAG
GGCCTCGAGCTTTTGGTTCAAAACCTGTCTCGACTCGACGAGACGTACGA
AGAGGACGCAAAGGGAGTGAACACCACCATGGGCGTGCTTGAAAACCTTC
TCGAGGGCCTCGAGCTTTTGGTTCAAAACCTGTCTCGACTCGACGAGACG
TACGAAGAGGACGCAAAGGGAGTGAACACCACCATGGGCGTGCTTGAAAA
CCTTCTCGAGGCTCGACCAAGCTTGGGGCCGACCCTGTGCGAGCCGCCGC
TGAGCGTGTTGCGATTTCTGTTAAAGAGGCTGCAGGTGAAAAAATTCGAC
GAGAACAAGCTCTACTGCTCCGAGATCCTGGCCATGCTGGTGAACGGCGA
TACCGACGTCCAGAGAAGGCTCGGAACTCTCCAGGGCTCGACCAAGCTTG
GGGCCGACCCTGTGCGAGCCGCCGCTGAGCGTGTTGCGATTTCTGTTAAA
GAGGCTGCAGGTGAAAAAATTCGACGAGAACAAGCTCTACTGCTCCGAGA
TCCTGGCCATGCTGGTGAACGGCGATACCGACGTCCAGAGAAGGCTCGGA
ACTCTCCAGGGGATGGACGGTATCGACAGGCTTTTGCAGATCGTGGCGTA
CTACCGCCGCCGCCAGCCTCAATCTCCAGAGGGATGGACGGTATCGACAG
GCTTTTGCAGATCGTGGCGTACTACCGCCGCCGCCAGCCTCAATCTCCAG
AGGAAGAAGAGTGCGTGGAAAACCTGTTCGATGCCCTGGCCGCGGCCCTC
TTGGTTCCGGACAACCAGGCCAGATTTCGCTACGGTGAGGAAGAAGAGTG
CGTGGAAAACCTGTTCGATGCCCTGGCCGCGGCCCTCTTGGTTCCGGACA
ACCAGGCCAGATTTCGCTACGGTGAG
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