mRNA_H-elongata_contig47314.11845.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig47314.11845.1 vs. uniprot
Match: A0A6H5KZE6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZE6_9PHAE) HSP 1 Score: 139 bits (350), Expect = 9.350e-37 Identity = 82/212 (38.68%), Postives = 123/212 (58.02%), Query Frame = 1
Query: 7 TWNVRTMSERGTNGPGH-AEDLLMFAAKYKCDFIAIQQTRRDGRTIIQAPAAGYVVHRSGHCDGDGGKPGILGVCLAVKKSITPALGPDGIVPEHISARLLKVRVIFNHRAVTTFIVGYAPTETEATCH------KSKYWKELRSTVAEVPASDHLILMMGANVRTGGREEGGGLGGVRVLGPYGRDTLNDNGPRLLSCSAEHKLSIVNTLF 621
T+NV T++ G N GH ++ + CD I +Q+TRR+G+ I GYV+ SG G K G GV +A+K++I ++G +G E IS RL+KVR+ TF+VGYAPTET + K +W L + + EV + DHL+++MGAN RTG R +G +++G GRD +N+NG RLL +++++LS+ NT F
Sbjct: 13 TFNVHTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGGHGVGIAIKEAIWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRSTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMGANARTGRRRDG--CCDAKIMGANGRDIMNNNGERLLELASDNQLSLTNTYF 220
BLAST of mRNA_H-elongata_contig47314.11845.1 vs. uniprot
Match: A0A6H5J5Z5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5Z5_9PHAE) HSP 1 Score: 99.4 bits (246), Expect = 7.130e-21 Identity = 51/128 (39.84%), Postives = 79/128 (61.72%), Query Frame = 1
Query: 256 ALGPDGIVPEHISARLLKVRVIFNHRAVTTFIVGYAPTETEATCH------KSKYWKELRSTVAEVPASDHLILMMGANVRTGGREEGGGLGGVRVLGPYGRDTLNDNGPRLLSCSAEHKLSIVNTLF 621
++G +G E IS RL+KVR+ TF+VGYAPT+T T K +W + + + EV + DHL+++M AN RTG R +G +++G YGRD++N+NG RLL +++++LS+ NT F
Sbjct: 4 SVGEEGRTVECISLRLMKVRLQIGRTCGVTFVVGYAPTDTVRTTAGGDVNAKDSFWTAVDAAIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDSMNNNGERLLGPASDNQLSLTNTYF 129
BLAST of mRNA_H-elongata_contig47314.11845.1 vs. uniprot
Match: A0A6H5KRE7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRE7_9PHAE) HSP 1 Score: 96.3 bits (238), Expect = 1.180e-19 Identity = 52/128 (40.62%), Postives = 76/128 (59.38%), Query Frame = 1
Query: 256 ALGPDGIVPEHISARLLKVRVIFNHRAVTTFIVGYAPTETEATCH------KSKYWKELRSTVAEVPASDHLILMMGANVRTGGREEGGGLGGVRVLGPYGRDTLNDNGPRLLSCSAEHKLSIVNTLF 621
++ DG V E IS RL+KVR+ TF+VGYAP +T T K +W L + + E + DHL+++MGAN RTG R +G +++G YGRD +N+NG RLL ++++ LS+ NT F
Sbjct: 112 SIAHDGTV-ECISPRLMKVRLTIGRTCGVTFVVGYAPAKTVRTTAGGDLNAKDSFWTALDAALREFQSRDHLVVLMGANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNHLSLTNTYF 236
BLAST of mRNA_H-elongata_contig47314.11845.1 vs. uniprot
Match: A0A654HQ13_9CEST (Uncharacterized protein n=1 Tax=Sparganum proliferum TaxID=64606 RepID=A0A654HQ13_9CEST) HSP 1 Score: 68.9 bits (167), Expect = 4.380e-10 Identity = 44/134 (32.84%), Postives = 70/134 (52.24%), Query Frame = 1
Query: 220 GVCLAVKKSITPALGPDGIVPEHISARLLKVRVIFNHRAVTTFIVGYAPTETEATCHKSKYWKELRSTVAEVPASDHLILMMGANVRTGGREEGGGLGGVRVLGPYGRDTLNDNGPRLLSCSAEHKLSIVNTLF 621
GV ++ I +G +P+ I+ RL+ +R+ T + YAP T + K+++++ + +A V +D LI++ NVR G + G VLGP+GR+ LNDNG LL AE +L + NT F
Sbjct: 312 GVAFTIRNDI---VGQLLCLPQGINNRLMSLRLPLGRGKFVTILSVYAPPMTSPDTERDKFYEDIHTLLATVSKADKLIVLGDFNVRVG-TDHAAWRG---VLGPHGRNGLNDNGLLLLRTCAEQRLILTNTFF 438
BLAST of mRNA_H-elongata_contig47314.11845.1 vs. uniprot
Match: UPI001D0708D2 (craniofacial development protein 2-like n=1 Tax=Coccinella septempunctata TaxID=41139 RepID=UPI001D0708D2) HSP 1 Score: 67.0 bits (162), Expect = 1.110e-9 Identity = 60/213 (28.17%), Postives = 95/213 (44.60%), Query Frame = 1
Query: 1 VATWNVRTMSERGTNGPGHAEDLLMFAAKYKCDFIAIQQTRRDGRTIIQAPAAGYVVHRSGHCDGDGGKPGILGVCLAVKKSITPALGPDGIVPEHI------SARLLKVRVIFNHRAVTTFIVGYAPTETEATCHKSKYWKELRSTVAEVPASDHLILMMGANVRTGGREEGGGLGGVRVLGPYGRDTLNDNGPRLLSCSAEHKLSIVNTLF 621
+ATWNVR++ G E+L + + +AI +T++ G+ + VV+ + + + GV + K+IT EH+ S R+L V I N + T I+ Y P E + K +W++L TV A +I++ N R G G V+GP+G +T N+NG R+L + L I NTLF
Sbjct: 36 IATWNVRSLQ-------GKEEELEREFEEMGLEILAITETKKKGKGTVDTKNGHLVVYSGVNEE----MRAMAGVGCMINKNIT----------EHVNGWKGWSERILTVE-IENKDEMKTVIIVYGPNEDDNKQTKDSFWEDL--TVVTERAKGTIIILGDFNSRVGK----GDRMFESVMGPFGEETRNNNGERMLDFCLLNDLIITNTLF 220
BLAST of mRNA_H-elongata_contig47314.11845.1 vs. uniprot
Match: A0A224XIY2_9HEMI (Putative rna-directed dna polymerase from mobile element jockey (Fragment) n=1 Tax=Panstrongylus lignarius TaxID=156445 RepID=A0A224XIY2_9HEMI) HSP 1 Score: 66.6 bits (161), Expect = 2.840e-9 Identity = 61/206 (29.61%), Postives = 94/206 (45.63%), Query Frame = 1
Query: 7 TWNVRTMSERGTNGPGHAEDLLMFAAKYKCDFIAIQQTRRDGRTIIQAPAAGYVVHRSGHCDGDGGKPGILGVCLAVKKSITPALGPDGIVPEHISARLLKVRVIFNHRAVTTFIVGYAPTETEATCHKSKYWKELRSTVAEVPASDHLILMMG-ANVRTGGREEGGGLGGVRVLGPYGRDTLNDNGPRLLSCSAEHKLSIVNTLF 621
TWNVR ++ G +L+ +AI +T++ G + + GY++ SG K GV V K IT + + E I LK + N++ T I Y P E E T K K+++ L+ TV + D ++L++G N R G + G +VLGPYG +T N+ G RLL + L + NT +
Sbjct: 38 TWNVRGIA-------GKELELIEEMKTASVQVVAITETKKKGTGCTEI-SDGYILIHSGVPTNTRAK---AGVAFLVHKDITGQIEGWKYINERILTLKLKDQ---NNKETFTLIAVYGPNEDELTEVKDKFFETLQKTVDD---EDGILLVLGDLNGRVGNCQ----TGYEKVLGPYGEETRNNIGKRLLQFCLANDLVLFNTRY 222
BLAST of mRNA_H-elongata_contig47314.11845.1 vs. uniprot
Match: UPI001D089350 (craniofacial development protein 2-like n=1 Tax=Coccinella septempunctata TaxID=41139 RepID=UPI001D089350) HSP 1 Score: 61.2 bits (147), Expect = 1.230e-7 Identity = 45/175 (25.71%), Postives = 86/175 (49.14%), Query Frame = 1
Query: 91 KCDFIAIQQTRRDGRTIIQAPAAGYVVHRSGHCDGDGGKPGILGVCLAVKKSITPALGPDGIVPEHISARLLKVRV-IFNHRAVTTFIVGYAPTETEATCHKSKYWKELRSTVAEVPASDHLILMMGANVRTGGREEGGGLGGVRVLGPYGRDTLNDNGPRLLSCSAEHKLSIVN 612
K D I +T++ G+ + + GY H D + G+ + +++++ + E IS R++K+ + I+ HR TT I Y + K K++++L++ + +V S +I++ N R G +++GPYG DT NDNG RL++ ++ + I+N
Sbjct: 12 KLDIAVITETKKKGQG---SESMGYYDHFYSGVPKD--RRAQQGISILIRRNLRKYIQSW----EAISERIIKMNLTIYGHR--TTIIEVYGVNDDSLVSTKDKFFEDLKNEIMKVGKSREIIILGDLNSRVGKNRNS------QIVGPYGEDTRNDNGNRLITLCEQNDVKIMN 169
BLAST of mRNA_H-elongata_contig47314.11845.1 vs. uniprot
Match: A0A6J2YSY1_SITOR (craniofacial development protein 2-like n=1 Tax=Sitophilus oryzae TaxID=7048 RepID=A0A6J2YSY1_SITOR) HSP 1 Score: 56.6 bits (135), Expect = 1.420e-6 Identity = 36/135 (26.67%), Postives = 67/135 (49.63%), Query Frame = 1
Query: 217 LGVCLAVKKSITPALGPDGIVPEHISARLLKVRVIFNHRAVTTFIVGYAPTETEATCHKSKYWKELRSTVAEVPASDHLILMMGANVRTGGREEGGGLGGVRVLGPYGRDTLNDNGPRLLSCSAEHKLSIVNTLF 621
LGV + +K+++ + E IS R++K+ + +T F V Y + K K++++L + + +V +I++ N R G + +V+GPYG DT NDNG RL++ ++ I+N +
Sbjct: 19 LGVSVLIKRNLRKHVHSW----EAISERIIKINMTVRENRITIFGV-YCIDDDSLVNVKDKFFEDLNNEITKVGKIREIIILGDLNCRVGKSTDS------QVVGPYGEDTKNDNGNRLIALCVQNDFKIMNGFY 142 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47314.11845.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig47314.11845.1 >prot_H-elongata_contig47314.11845.1 ID=prot_H-elongata_contig47314.11845.1|Name=mRNA_H-elongata_contig47314.11845.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=199bp MSERGTNGPGHAEDLLMFAAKYKCDFIAIQQTRRDGRTIIQAPAAGYVVHback to top mRNA from alignment at H-elongata_contig47314:3508..4128- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig47314.11845.1 ID=mRNA_H-elongata_contig47314.11845.1|Name=mRNA_H-elongata_contig47314.11845.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=621bp|location=Sequence derived from alignment at H-elongata_contig47314:3508..4128- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig47314:3508..4128- >mRNA_H-elongata_contig47314.11845.1 ID=mRNA_H-elongata_contig47314.11845.1|Name=mRNA_H-elongata_contig47314.11845.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1194bp|location=Sequence derived from alignment at H-elongata_contig47314:3508..4128- (Himanthalia elongata Himel1 dioecious)back to top |