mRNA_H-elongata_contig4731.11844.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig4731.11844.1
Unique NamemRNA_H-elongata_contig4731.11844.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig4731.11844.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig4731contigH-elongata_contig4731:4311..5942 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1002
Cds size1002
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig4731.11844.1prot_H-elongata_contig4731.11844.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig4731 4311..5942 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930781.3741581-CDS-H-elongata_contig4731:4310..43931622930781.3741581-CDS-H-elongata_contig4731:4310..4393Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4731 4311..4393 -
1691679567.4809616-CDS-H-elongata_contig4731:4310..43931691679567.4809616-CDS-H-elongata_contig4731:4310..4393Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4731 4311..4393 -
1622930781.38924-CDS-H-elongata_contig4731:4699..54201622930781.38924-CDS-H-elongata_contig4731:4699..5420Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4731 4700..5420 -
1691679567.4897656-CDS-H-elongata_contig4731:4699..54201691679567.4897656-CDS-H-elongata_contig4731:4699..5420Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4731 4700..5420 -
1622930781.405926-CDS-H-elongata_contig4731:5647..57461622930781.405926-CDS-H-elongata_contig4731:5647..5746Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4731 5648..5746 -
1691679567.5010018-CDS-H-elongata_contig4731:5647..57461691679567.5010018-CDS-H-elongata_contig4731:5647..5746Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4731 5648..5746 -
1622930781.4308817-CDS-H-elongata_contig4731:5843..59421622930781.4308817-CDS-H-elongata_contig4731:5843..5942Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4731 5844..5942 -
1691679567.5092285-CDS-H-elongata_contig4731:5843..59421691679567.5092285-CDS-H-elongata_contig4731:5843..5942Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4731 5844..5942 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig4731.11844.1

>prot_H-elongata_contig4731.11844.1 ID=prot_H-elongata_contig4731.11844.1|Name=mRNA_H-elongata_contig4731.11844.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=334bp
MPRFCVYAVIARPGPIRSGFKKVLQPPSFGCRSVHRLQRVVVAKQDRIDH
LKRQTSLGFLREAREQVEEYREEAKRLARTLEAATSGIGQPFRRSDDPKN
DSLARTDTSHEILTPCCVERQGSDERVYNPRVAGVTRRRRFHQSSAIVIR
PQSAHGFGKSCSRDKRHENDDVRALSKSQAVSTSGEWPLTIKKTIEEGQG
LDPSLVWDTKSNARPTRETIVATAADSKSGTMPRDRGRRSLDLRTPLTGV
TEVATPIASVDILRAATRPSRYRRSSARSSSRASSRKEYRVSVGYCCSPA
RSKGYGAGETRAKSMVASARLRARVQEAMVERNE
back to top

mRNA from alignment at H-elongata_contig4731:4311..5942-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig4731.11844.1 ID=mRNA_H-elongata_contig4731.11844.1|Name=mRNA_H-elongata_contig4731.11844.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1632bp|location=Sequence derived from alignment at H-elongata_contig4731:4311..5942- (Himanthalia elongata Himel1 dioecious)
ATGCCCAGGTTTTGTGTCTACGCGGTGATTGCCCGCCCCGGCCCCATCAG
GAGTGGCTTCAAGAAGGTGCTTCAACCTCCCAGCTTCGGCTGCAGGTCTG
TGAGTGAGGTAAATTACAATTGGCGTTTACGTTGTTATAGATGTCACGAA
GCGCAAATACATGACATCCATATGTTGCGCCGCATCCCACTTGCAGGTGC
ACAGGCTACAAAGGGTCGTCGTAGCGAAGCAGGATCGAATCGACCATCTT
AAGCGTCAAACTTCGCTGGGATTTCTTCGGGAGGCGCGGGAGCAGGTCAG
GCTCGAGACTTCAATTCGCATCGGCAGACCGTCGTCCGCTTCGATAAGAA
CATAATGAGACAAAATTGCAAATACCTACCTTTGAGCTCATTAGTGGACC
TTGGTAAAATCGAACACGCCCTGGCTGTATTGGTGAAACGGTTTATCAGA
GCAAATCTACGACCATTATTATTCACCATGCGGCTTACTGACATATTCTC
CGCCGCCACGTACGATGCTCAGGTTGAAGAGTATCGCGAGGAAGCAAAAC
GACTCGCTCGCACTCTAGAGGCAGCAACAAGTGGAATCGGACAACCGTTT
CGGCGTTCAGATGATCCCAAGAACGATAGCTTGGCGCGAACGGACACGAG
TCATGAGATTCTTACGCCCTGCTGTGTGGAGAGGCAGGGCAGCGATGAAC
GAGTATATAACCCTCGAGTGGCGGGTGTTACTCGTCGACGGCGGTTTCAT
CAGTCATCAGCGATCGTAATCCGACCACAATCGGCTCATGGGTTCGGTAA
ATCATGCTCGAGGGATAAAAGACATGAAAACGATGATGTACGAGCTTTGT
CCAAGTCGCAAGCAGTGTCCACCTCGGGTGAATGGCCCTTGACAATAAAA
AAGACGATCGAGGAGGGGCAGGGGCTAGATCCATCGCTGGTATGGGACAC
CAAAAGTAACGCCCGGCCTACGCGTGAAACGATAGTGGCTACGGCGGCTG
ATAGTAAAAGTGGAACGATGCCACGAGATAGAGGACGAAGATCGCTAGAT
CTTCGAACACCACTCACGGGCGTAACGGAAGTCGCGACTCCAATAGCTTC
GGTGGATATTTTGCGCGCTGCCACTCGACCATCAAGATACAGACGGTCCT
CGGCGAGGAGCTCCTCCCGAGCGTCGTCGCGTAAAGAATATAGGGTATCG
GTTGGATATTGCTGCTCACCTGCTCGCTCGAAGGGATACGGCGGTGAGAT
AGAGAGGTGAAAATGATGAAAGAATCAAGCGTCTACATGCGCCCACCAAC
ATTTTGTTGGACGTGATTGGAACACGCAGCGGCATCCTCCGTCTCCCACG
ATAGGAACGGAGAAAAATGATTCGTATGGTCAACCGCCAAAACGAGCAAA
CGCGTTTCCAACAAGCTGCGCAGAAAACAAAATGGGGTGATTGTTCAATT
CCAAAACTGAGAAAGGGATTCCACGCTTCAATATCCACAGTAACAATTTT
ACTATTGCTGACGATCTGACGCATCGTCTCCCGAATCTCGTGCGTGTAGC
GGGGGAGACACGCGCAAAGAGCATGGTGGCTTCGGCGCGCTTACGAGCAA
GGGTACAGGAAGCTATGGTGGAGAGAAACGAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig4731:4311..5942-

>mRNA_H-elongata_contig4731.11844.1 ID=mRNA_H-elongata_contig4731.11844.1|Name=mRNA_H-elongata_contig4731.11844.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2004bp|location=Sequence derived from alignment at H-elongata_contig4731:4311..5942- (Himanthalia elongata Himel1 dioecious)
ATGCCCAGGTTTTGTGTCTACGCGGTGATTGCCCGCCCCGGCCCCATCAG
GAGTGGCTTCAAGAAGGTGCTTCAACCTCCCAGCTTCGGCTGCAGGTCTA
TGCCCAGGTTTTGTGTCTACGCGGTGATTGCCCGCCCCGGCCCCATCAGG
AGTGGCTTCAAGAAGGTGCTTCAACCTCCCAGCTTCGGCTGCAGGTCTGT
GCACAGGCTACAAAGGGTCGTCGTAGCGAAGCAGGATCGAATCGACCATC
TTAAGCGTCAAACTTCGCTGGGATTTCTTCGGGAGGCGCGGGAGCAGGTG
CACAGGCTACAAAGGGTCGTCGTAGCGAAGCAGGATCGAATCGACCATCT
TAAGCGTCAAACTTCGCTGGGATTTCTTCGGGAGGCGCGGGAGCAGGTTG
AAGAGTATCGCGAGGAAGCAAAACGACTCGCTCGCACTCTAGAGGCAGCA
ACAAGTGGAATCGGACAACCGTTTCGGCGTTCAGATGATCCCAAGAACGA
TAGCTTGGCGCGAACGGACACGAGTCATGAGATTCTTACGCCCTGCTGTG
TGGAGAGGCAGGGCAGCGATGAACGAGTATATAACCCTCGAGTGGCGGGT
GTTACTCGTCGACGGCGGTTTCATCAGTCATCAGCGATCGTAATCCGACC
ACAATCGGCTCATGGGTTCGGTAAATCATGCTCGAGGGATAAAAGACATG
AAAACGATGATGTACGAGCTTTGTCCAAGTCGCAAGCAGTGTCCACCTCG
GGTGAATGGCCCTTGACAATAAAAAAGACGATCGAGGAGGGGCAGGGGCT
AGATCCATCGCTGGTATGGGACACCAAAAGTAACGCCCGGCCTACGCGTG
AAACGATAGTGGCTACGGCGGCTGATAGTAAAAGTGGAACGATGCCACGA
GATAGAGGACGAAGATCGCTAGATCTTCGAACACCACTCACGGGCGTAAC
GGAAGTCGCGACTCCAATAGCTTCGGTGGATATTTTGCGCGCTGCCACTC
GACCATCAAGATACAGACGGTCCTCGGCGAGGAGCTCCTCCCGAGCGTCG
TCGCGTAAAGAATATAGGGTATCGGTTGGATATTGCTGCTCACCTGCTCG
CTCGAAGGGATACGGCGGTTGAAGAGTATCGCGAGGAAGCAAAACGACTC
GCTCGCACTCTAGAGGCAGCAACAAGTGGAATCGGACAACCGTTTCGGCG
TTCAGATGATCCCAAGAACGATAGCTTGGCGCGAACGGACACGAGTCATG
AGATTCTTACGCCCTGCTGTGTGGAGAGGCAGGGCAGCGATGAACGAGTA
TATAACCCTCGAGTGGCGGGTGTTACTCGTCGACGGCGGTTTCATCAGTC
ATCAGCGATCGTAATCCGACCACAATCGGCTCATGGGTTCGGTAAATCAT
GCTCGAGGGATAAAAGACATGAAAACGATGATGTACGAGCTTTGTCCAAG
TCGCAAGCAGTGTCCACCTCGGGTGAATGGCCCTTGACAATAAAAAAGAC
GATCGAGGAGGGGCAGGGGCTAGATCCATCGCTGGTATGGGACACCAAAA
GTAACGCCCGGCCTACGCGTGAAACGATAGTGGCTACGGCGGCTGATAGT
AAAAGTGGAACGATGCCACGAGATAGAGGACGAAGATCGCTAGATCTTCG
AACACCACTCACGGGCGTAACGGAAGTCGCGACTCCAATAGCTTCGGTGG
ATATTTTGCGCGCTGCCACTCGACCATCAAGATACAGACGGTCCTCGGCG
AGGAGCTCCTCCCGAGCGTCGTCGCGTAAAGAATATAGGGTATCGGTTGG
ATATTGCTGCTCACCTGCTCGCTCGAAGGGATACGGCGCGGGGGAGACAC
GCGCAAAGAGCATGGTGGCTTCGGCGCGCTTACGAGCAAGGGTACAGGAA
GCTATGGTGGAGAGAAACGAACGGGGGAGACACGCGCAAAGAGCATGGTG
GCTTCGGCGCGCTTACGAGCAAGGGTACAGGAAGCTATGGTGGAGAGAAA
CGAA
back to top