mRNA_H-elongata_contig47302.11842.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig47302.11842.1
Unique NamemRNA_H-elongata_contig47302.11842.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig47302.11842.1 vs. uniprot
Match: D8LGS7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGS7_ECTSI)

HSP 1 Score: 211 bits (536), Expect = 7.450e-60
Identity = 105/185 (56.76%), Postives = 128/185 (69.19%), Query Frame = 1 
Query:    1 VAGIWSVANGEAFFVNFYDPKAVINFELTILCGWWAELGLPPVAIMTDSDIEGLAAYVIQGISLQIPQPGHKGRVDMAEASLHFDPGPPPPRFEFDRLRISPQRVGRQSEEQS--HP---SDKARSVVWKGLRKFGRRPVLLALARDEPSSMIVRGWDSSMAWRMTNVITFHEVDWKLWTQPRKP 540
            V  +W+V++GEA  V+ YD KAV N E+T+LCGWWAELG+  +  M  + + GLAAY++Q ISLQIPQP  KGRVDM++ASL F PGPPPP FEF   + +P+     SE  +   P      A  VVW+G+R   RR VLLA AR+ PS MIVRGWDSSMAWRMTNVITFHE DWK W    +P
Sbjct:   58 VLSVWAVSDGEAITVSVYDHKAVQNLEITLLCGWWAELGITGLKSMAPAGLSGLAAYLVQSISLQIPQPDRKGRVDMSKASLQFSPGPPPPPFEFGPSQFNPRNPSDGSEGGTTLRPPVGGRMASRVVWRGIRTLRRRAVLLACARNGPSMMIVRGWDSSMAWRMTNVITFHEDDWKTWKDVTEP 242
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BLAST of mRNA_H-elongata_contig47302.11842.1 vs. uniprot
Match: A0A6H5KDQ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDQ5_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 8.890e-44
Identity = 85/185 (45.95%), Postives = 110/185 (59.46%), Query Frame = 1 
Query:    1 VAGIWSVANGEAFFVNFYDPKAVINFELTILCGWWAELGLPPVAIMTDSDIEGLAAYVIQGISLQIPQPGHKGRVDMAEASLHFDPGPPPPRFEFDRLRISPQRV--GRQSEEQSHPSDKARS---VVWKGLRKFGRRPVLLALARDEPSSMIVRGWDSSMAWRMTNVITFHEVDWKLWTQPRKP 540
            V  +W+V++GEA  V+ YD KAV N E+T+LCGWWAELG+  +  M  + + GLAAY++Q ISLQIPQP  KGRVDM++ASL F PGPPPPRFEF   +   +    G ++ +   P    R+   VVW+G+R   RR VLLA AR+                     ITFHE DWK W    +P
Sbjct:   58 VLSVWAVSDGEAMTVSVYDHKAVQNLEITLLCGWWAELGITGLKSMAPAGLSGLAAYLVQSISLQIPQPDRKGRVDMSKASLQFSPGPPPPRFEFGPSQFDRRNPSDGSEAGDTLRPPVGGRTASRVVWRGIRTLRRRAVLLACARN---------------------ITFHEDDWKTWKDVTEP 221
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47302.11842.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGS7_ECTSI7.450e-6056.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KDQ5_9PHAE8.890e-4445.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig47302contigH-elongata_contig47302:933..2364 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_005170.1
Exons4
Model size540
Cds size540
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig47302.11842.1prot_H-elongata_contig47302.11842.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig47302 933..2364 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930781.1323905-CDS-H-elongata_contig47302:932..10981622930781.1323905-CDS-H-elongata_contig47302:932..1098Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47302 933..1098 +
1691679567.3594496-CDS-H-elongata_contig47302:932..10981691679567.3594496-CDS-H-elongata_contig47302:932..1098Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47302 933..1098 +
1622930781.150039-CDS-H-elongata_contig47302:1336..15961622930781.150039-CDS-H-elongata_contig47302:1336..1596Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47302 1337..1596 +
1691679567.3747141-CDS-H-elongata_contig47302:1336..15961691679567.3747141-CDS-H-elongata_contig47302:1336..1596Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47302 1337..1596 +
1622930781.1749566-CDS-H-elongata_contig47302:1861..19241622930781.1749566-CDS-H-elongata_contig47302:1861..1924Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47302 1862..1924 +
1691679567.3845348-CDS-H-elongata_contig47302:1861..19241691679567.3845348-CDS-H-elongata_contig47302:1861..1924Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47302 1862..1924 +
1622930781.2042727-CDS-H-elongata_contig47302:2313..23641622930781.2042727-CDS-H-elongata_contig47302:2313..2364Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47302 2314..2364 +
1691679567.3944418-CDS-H-elongata_contig47302:2313..23641691679567.3944418-CDS-H-elongata_contig47302:2313..2364Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47302 2314..2364 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig47302.11842.1

>prot_H-elongata_contig47302.11842.1 ID=prot_H-elongata_contig47302.11842.1|Name=mRNA_H-elongata_contig47302.11842.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=180bp
VAGIWSVANGEAFFVNFYDPKAVINFELTILCGWWAELGLPPVAIMTDSD
IEGLAAYVIQGISLQIPQPGHKGRVDMAEASLHFDPGPPPPRFEFDRLRI
SPQRVGRQSEEQSHPSDKARSVVWKGLRKFGRRPVLLALARDEPSSMIVR
GWDSSMAWRMTNVITFHEVDWKLWTQPRKP
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mRNA from alignment at H-elongata_contig47302:933..2364+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig47302.11842.1 ID=mRNA_H-elongata_contig47302.11842.1|Name=mRNA_H-elongata_contig47302.11842.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1432bp|location=Sequence derived from alignment at H-elongata_contig47302:933..2364+ (Himanthalia elongata Himel1 dioecious)
GTGGCAGGAATATGGTCGGTCGCTAACGGGGAAGCATTCTTCGTCAACTT
CTATGATCCCAAAGCAGTAATTAATTTCGAATTGACAATTCTCTGTGGTT
GGTGGGCGGAGCTTGGGCTACCACCGGTGGCAATCATGACGGACAGTGAT
ATAGAAGGTCTGGCAGGTGCGACGGTGCTCGCTGGCGATTTATTTATTTA
TTTATTCGGCATATTCTTGTGGATCCCGAACCAACGCGTCATCATCACCA
GGATCCCCGTTCCACAATAATACACCTCCGCTGAACACAGGTTCATGCAT
TCGCGCGTGCGTTGTGCTTGTGTATCGTAACCATTTAGAATGCCACTTCA
TGCAAAACATATGTTGCGCTGACGGAGAAATTCATCCATCATCTTCCTGC
GCAGCGTATGTCATACAAGGCATCTCGCTCCAAATACCACAACCTGGCCA
CAAGGGCCGCGTGGATATGGCGGAAGCTTCGCTACACTTCGATCCAGGCC
CTCCTCCACCGCGGTTCGAGTTCGATCGCCTGCGAATCAGTCCGCAAAGA
GTTGGGAGACAGAGTGAAGAGCAGAGTCATCCTTCAGACAAGGCTCGAAG
TGTGGTGTGGAAAGGTCTACGCAAATTCGGACGTCGACCTGTCCTTCTGG
CGTTAGCCCGTGATGTCAGTCTAGCCACCTTCACGATACGAATATAGCGC
TGGAGAAATGAAAGTATAAGTCGGAGTACGCCTGCCTTCAAATCAAAGAA
AATATACCCACTAAAAAAATATGAGTTCTGGGAAGCAGCAGCGTCGTGGA
ATACTCGCCCTCTTCCTCTGTGATGTATGAGGCTGCTGCAACACGTTTTT
CCACGTGGCATCATTTCACCCTCTCAAGTATGTTAAGTCGTTTTGAGCCC
GCCTGGCGTACCTTGCACCGATCGTGCAGGAACCTTCTTCTATGATCGTT
CGAGGCTGGGATTCGTCCATGGCGTGGCGGATGACCAACGTGGTAAGAAA
GTTTGACAGGAAATATCGCACTTGTTGTAGCACGTCCTCCAGTGGCCTTT
GCATAATATTACGTACGCATGCTCCGACTACATCATGTCTAATGGGACGG
GAGTGCTGAACCCGTCTCGCGAGACCAAATTTTCAAACACGAACGGGGAC
AGGGGAAAATTATTTTCCCTGTTCAGCTGACCATGAGCAGAAGGCAACCA
TATCCGGTTCTTCCTTCCTATTCTGCTAAAAGTGCGACCAACAACGATGG
CAATGCTGGGGTGTTCTTTCCATCTGTGATGCTTAATTTCACTAAATCTT
CTTCCCCCAAACCACCCTCGATTTTGCCGGGGTTTGTACGCCATACCCTT
TTTCTTCCCCCGCTCTCCCGACGTCTCATAGATAACCTTTCACGAAGTAG
ACTGGAAACTTTGGACGCAGCCACGGAAGCCC
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Coding sequence (CDS) from alignment at H-elongata_contig47302:933..2364+

>mRNA_H-elongata_contig47302.11842.1 ID=mRNA_H-elongata_contig47302.11842.1|Name=mRNA_H-elongata_contig47302.11842.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1080bp|location=Sequence derived from alignment at H-elongata_contig47302:933..2364+ (Himanthalia elongata Himel1 dioecious)
GTGGCAGGAATATGGTCGGTCGCTAACGGGGAAGCATTCTTCGTCAACTT
CTATGATCCCAAAGCAGTAATTAATTTCGAATTGACAATTCTCTGTGGTT
GGTGGGCGGAGCTTGGGCTACCACCGGTGGCAATCATGACGGACAGTGAT
ATAGAAGGTCTGGCAGGTGGCAGGAATATGGTCGGTCGCTAACGGGGAAG
CATTCTTCGTCAACTTCTATGATCCCAAAGCAGTAATTAATTTCGAATTG
ACAATTCTCTGTGGTTGGTGGGCGGAGCTTGGGCTACCACCGGTGGCAAT
CATGACGGACAGTGATATAGAAGGTCTGGCAGCGTATGTCATACAAGGCA
TCTCGCTCCAAATACCACAACCTGGCCACAAGGGCCGCGTGGATATGGCG
GAAGCTTCGCTACACTTCGATCCAGGCCCTCCTCCACCGCGGTTCGAGTT
CGATCGCCTGCGAATCAGTCCGCAAAGAGTTGGGAGACAGAGTGAAGAGC
AGAGTCATCCTTCAGACAAGGCTCGAAGTGTGGTGTGGAAAGGTCTACGC
AAATTCGGACGTCGACCTGTCCTTCTGGCGTTAGCCCGTGATCGTATGTC
ATACAAGGCATCTCGCTCCAAATACCACAACCTGGCCACAAGGGCCGCGT
GGATATGGCGGAAGCTTCGCTACACTTCGATCCAGGCCCTCCTCCACCGC
GGTTCGAGTTCGATCGCCTGCGAATCAGTCCGCAAAGAGTTGGGAGACAG
AGTGAAGAGCAGAGTCATCCTTCAGACAAGGCTCGAAGTGTGGTGTGGAA
AGGTCTACGCAAATTCGGACGTCGACCTGTCCTTCTGGCGTTAGCCCGTG
ATGAACCTTCTTCTATGATCGTTCGAGGCTGGGATTCGTCCATGGCGTGG
CGGATGACCAACGTGGAACCTTCTTCTATGATCGTTCGAGGCTGGGATTC
GTCCATGGCGTGGCGGATGACCAACGTGATAACCTTTCACGAAGTAGACT
GGAAACTTTGGACGCAGCCACGGAAGCCCATAACCTTTCACGAAGTAGAC
TGGAAACTTTGGACGCAGCCACGGAAGCCC
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