mRNA_H-elongata_contig4729.11838.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig4729.11838.1
Unique NamemRNA_H-elongata_contig4729.11838.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig4729.11838.1 vs. uniprot
Match: D8LE96_ECTSI (Ubiquitin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE96_ECTSI)

HSP 1 Score: 154 bits (389), Expect = 1.190e-34
Identity = 110/260 (42.31%), Postives = 144/260 (55.38%), Query Frame = 2 
Query:  185 KVTNHRLDSVNFTFVISPTPTRLETVYPYRRPNYRIPWPAREIKMFLKPRDSRVILQVDKIDLSKEFGPWPFKWEFEA-------------------------------AQTEIADPAMAASELLQQQAQLEGDVGEAARVALEAERQEEAEAAQ------KADKEMAFAQAFATAAAPLPGVPLSASLDXXXXXXXXXXXXVLSKVNADGAASSLEGKVGEAGLR-LKYKDGVEEAFWEL-GRYGPTTAEVEEEPLGET 847
            +VTNHR+DSV FTF I PTP+RL+TVYP RRPNY +P   R++ + LKPR++  I++VDK+DL++EF P PF W FEA                                 T +   A+ AS+LL++QAQLEGD+GEAARVAL+ E++E AEA        K  +E   +QA A  A+ LP +P                  V+SKV ADG +SS EGKVG+AG      + G E  FW +    GP    VE+E  GET
Sbjct: 3710 RVTNHRMDSVTFTFKIEPTPSRLDTVYPSRRPNYHVP-AGRDVTLLLKPRETAGIMEVDKLDLTREFQPHPFNWVFEALPETPTATEGAATAPXXXXXXXXXXXXXGEAVPTTVLPTALTASDLLEKQAQLEGDLGEAARVALKLEQEEAAEAQAAAIXXAKRAEEHELSQAVAATASSLPVIPYE----------------VVSKVKADGISSSSEGKVGDAGADDAGRRAGDEAEFWAVRAEAGPR---VEDEEHGET 3949
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig4729.11838.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LE96_ECTSI1.190e-3442.31Ubiquitin domain-containing protein n=2 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig4729contigH-elongata_contig4729:1461..4124 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.1
Seed ortholog evalue1.5e-18
Seed eggNOG ortholog2880.D8LE96
KEGG koko:K11840,ko:K11869
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsCOG5077@1,KOG1866@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size2314
Cds size738
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig4729.11838.1prot_H-elongata_contig4729.11838.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig4729 2721..3808 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930780.119223-UTR-H-elongata_contig4729:1460..27201622930780.119223-UTR-H-elongata_contig4729:1460..2720Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4729 1461..2720 -
1691679566.8739843-UTR-H-elongata_contig4729:1460..27201691679566.8739843-UTR-H-elongata_contig4729:1460..2720Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4729 1461..2720 -
1622930780.1667962-UTR-H-elongata_contig4729:3808..41241622930780.1667962-UTR-H-elongata_contig4729:3808..4124Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4729 3809..4124 -
1691679566.907064-UTR-H-elongata_contig4729:3808..41241691679566.907064-UTR-H-elongata_contig4729:3808..4124Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4729 3809..4124 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930780.1357632-CDS-H-elongata_contig4729:2720..33841622930780.1357632-CDS-H-elongata_contig4729:2720..3384Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4729 2721..3384 -
1691679566.887691-CDS-H-elongata_contig4729:2720..33841691679566.887691-CDS-H-elongata_contig4729:2720..3384Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4729 2721..3384 -
1622930780.152804-CDS-H-elongata_contig4729:3734..38081622930780.152804-CDS-H-elongata_contig4729:3734..3808Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4729 3735..3808 -
1691679566.898508-CDS-H-elongata_contig4729:3734..38081691679566.898508-CDS-H-elongata_contig4729:3734..3808Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4729 3735..3808 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig4729.11838.1

>prot_H-elongata_contig4729.11838.1 ID=prot_H-elongata_contig4729.11838.1|Name=mRNA_H-elongata_contig4729.11838.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=246bp
MFLKPRDSRVILQVDKIDLSKEFGPWPFKWEFEAAQTEIADPAMAASELL
QQQAQLEGDVGEAARVALEAERQEEAEAAQKADKEMAFAQAFATAAAPLP
GVPLSASLDVPLGVPLDVPLEVLSKVNADGAASSLEGKVGEAGLRLKYKD
GVEEAFWELGRYGPTTAEVEEEPLGETETATEVDEDSVDLKDDEVTVLFE
DKGDVGEVKPEGELTKVEAGTSADGEVDEAYEAAGIQDGEHRVYV*
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mRNA from alignment at H-elongata_contig4729:1461..4124-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig4729.11838.1 ID=mRNA_H-elongata_contig4729.11838.1|Name=mRNA_H-elongata_contig4729.11838.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2664bp|location=Sequence derived from alignment at H-elongata_contig4729:1461..4124- (Himanthalia elongata Himel1 dioecious)
CCTAAATTGGAGTGCAGTGCACTTTTTGCGTCTGGTCTGTGGCTGGCTCA
TTTTCGCTATAATCACAGTCAGTAGTCAGCGGCGGTTGTTCTGGTGCGTT
GACGAGGCTTGTTCGCCTTTGCGTGCCCTTTTGCTGCCCCGTGGGTCGAT
CGATGTGTCGATATTTTGATGGGCTGAATGTCACAAGGTCACAAATCATA
GGCTGGACAGCGTGAACTTCACCTTCGTCATCAGCCCTACGCCAACGCGG
CTGGAGACGGTCTATCCGTACAGACGGCCGAACTATCGCATTCCGTGGCC
CGCTCGAGAAATCAAGATGTTCCTCAAGCCTCGAGACAGTCGTGTCATCC
TCCAAGTGGACAAGATTGACCTCAGCAAGGAATTCGGACCGTAAGTAGGC
AACACACAACAGTGCCCCACCGCCCTACCAGTATCGCAACTGGTTATAAC
TATAGAATCAACATTTCCCGCCTGCAGTGCTCGCCGATGATTCTTCCATG
ATCTTGATCCAATCTTGATATGATAAATCACCGAGAGCAGGAAGCATGCA
GGTGGAGAGGCACGTGCTAAGCTAAGCTATCGGTGAAAGTGTACATGTGT
GTCTTTTGTTGGAAACGGTTTGATGAACCTGTGAAAAGAAAATATCTAGA
TAACGGGCTGGCTCCTCTCGGCGACAAGCTTTGATAACTCTTTTCCTTTG
CCCCCCATATTATCGCCTTGTGTGCGTCCCATTTGTCCAGATGGCCGTTC
AAGTGGGAGTTTGAGGCGGCGCAGACTGAGATCGCCGATCCCGCGATGGC
CGCTTCCGAGCTCTTGCAGCAGCAGGCCCAGCTCGAGGGAGACGTGGGCG
AAGCGGCTAGGGTGGCGCTTGAGGCCGAGAGGCAAGAGGAAGCCGAAGCC
GCCCAAAAAGCGGACAAAGAAATGGCCTTTGCCCAGGCATTCGCTACCGC
GGCCGCTCCCTTGCCGGGGGTTCCTCTGAGTGCCTCTTTGGATGTTCCTT
TGGGTGTCCCTTTAGATGTCCCACTGGAGGTGCTGTCGAAGGTCAATGCG
GACGGCGCAGCGTCCTCGTTGGAAGGTAAGGTTGGAGAGGCTGGGCTCCG
GTTGAAGTACAAGGATGGTGTGGAAGAGGCGTTCTGGGAATTGGGTCGCT
ATGGACCGACGACGGCGGAGGTGGAGGAGGAGCCCCTTGGAGAAACAGAA
ACGGCAACAGAGGTCGACGAGGACAGTGTAGACCTGAAGGACGATGAAGT
GACGGTACTGTTCGAGGACAAGGGAGATGTCGGGGAGGTCAAGCCCGAGG
GGGAATTAACGAAGGTAGAGGCCGGGACGAGTGCAGACGGTGAAGTGGAT
GAGGCGTACGAGGCAGCTGGGATCCAGGATGGGGAGCACCGGGTTTACGT
ATGAAGCACGCTTTGACTACAGCACGGCACAGCACATTAGCTCTTGAAGG
GCGGTCGGGTCGGGCGGGTGATGTGTGTGTATTTTTGGCGGGATATGTTT
TTGTATAGTGTCTTGTGTTGCGATGGGAAAAAATGGGGTTAGTGCTTGTC
GTGTCATAGCACGCTTTGGATTGGAGGTCAGGTTATTCCTGAGTGGCTCT
TGGCTTTTTATCCGTGTGGGACTTGCCAAGGCTGTTCTGCTGACAAATAT
GTTTTGATGATCTGGGTAGAGCTAGTCGGTGGGCCTTTCTGTTTAGTTGA
CAAAAGGTCGGCGAAACCAAGTGTGTCGAGGCGTTGCTCATGATATGTTT
TGGTGTTGTTCTGATGCCCTCCCTGGCCCACGACGATTGGCCCTGGAATC
ATCCCTTCAATTGCTTCTAGGCACTCTTGACATCGCTACCCCTGTTCTGT
TCTCCCGGAGCACTAGAAAACTTCGAGCTGCGCTCACGCCTGATGTCCTG
CCGCACCTCCCTAGAAACGTGTTATTATTGAGGAAAGCCGTGAGAGGAGA
AGGTGTGCTGGGCTGGTGATTATTTTACATCCTGGTTTTGTCCAAGGGTT
TCCGCTTCGTTGGGGAAGCCTTGGGTATATTCTGAGGTGCTAGCAATTAT
TTCCGCGGTATGGTATGTTATGGTATGGAAGGGATCGCGAGGCTTGACGC
GGTTGCTCCTATATGGTATCTTCGGTGCTTGCCCTGCATGGGCTGTCGTT
ACGTGGTTGGTGTGTCCCGGCTCGCAATCAGTATGATTCGTGAGGGCGAG
GGGCAATTCTGCGAGATGCTTGCGTATTGTGTGTTTTTGTGAAGGGTACT
GAATGAACGTGCACCTCTTACACCGAGGGTTATCGTCCTAAAAGACGTGT
AGGCCCGCTGACACCAACGAAATCGCGCTGTGGGCGCCCACCTCACTGCC
GCGGAAAAAAAAACTTTATGGCAGTTGTTATGGGAGTTTTAGGCGTTATG
CTGTCGCTCGCGGAGATGAAAAACGAGCAAGTACATAGCCGTACTTTGAC
CATAGGATCCAGCCCAGCTTCCGCAAGACTTTCACCAACGATTCTTCATC
TCCCAAGGCCGACGTTACTCGGCAGGCAGAAAGCTCTACCCCACGCTGGT
GGTAACAGGTGGTCAGTACCCCTCCCGGCGAAGTATTAATGTAATTTTTT
ATTTTATAAAGTACAACCTCAACAACACCTCTTACGGCGCTACATCGCTG
GGGCTAGAGTTTTG
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Coding sequence (CDS) from alignment at H-elongata_contig4729:1461..4124-

>mRNA_H-elongata_contig4729.11838.1 ID=mRNA_H-elongata_contig4729.11838.1|Name=mRNA_H-elongata_contig4729.11838.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1476bp|location=Sequence derived from alignment at H-elongata_contig4729:1461..4124- (Himanthalia elongata Himel1 dioecious)
ATGTTCCTCAAGCCTCGAGACAGTCGTGTCATCCTCCAAGTGGACAAGAT
TGACCTCAGCAAGGAATTCGGACCATGTTCCTCAAGCCTCGAGACAGTCG
TGTCATCCTCCAAGTGGACAAGATTGACCTCAGCAAGGAATTCGGACCAT
GGCCGTTCAAGTGGGAGTTTGAGGCGGCGCAGACTGAGATCGCCGATCCC
GCGATGGCCGCTTCCGAGCTCTTGCAGCAGCAGGCCCAGCTCGAGGGAGA
CGTGGGCGAAGCGGCTAGGGTGGCGCTTGAGGCCGAGAGGCAAGAGGAAG
CCGAAGCCGCCCAAAAAGCGGACAAAGAAATGGCCTTTGCCCAGGCATTC
GCTACCGCGGCCGCTCCCTTGCCGGGGGTTCCTCTGAGTGCCTCTTTGGA
TGTTCCTTTGGGTGTCCCTTTAGATGTCCCACTGGAGGTGCTGTCGAAGG
TCAATGCGGACGGCGCAGCGTCCTCGTTGGAAGGTAAGGTTGGAGAGGCT
GGGCTCCGGTTGAAGTACAAGGATGGTGTGGAAGAGGCGTTCTGGGAATT
GGGTCGCTATGGACCGACGACGGCGGAGGTGGAGGAGGAGCCCCTTGGAG
AAACAGAAACGGCAACAGAGGTCGACGAGGACAGTGTAGACCTGAAGGAC
GATGAAGTGACGGTACTGTTCGAGGACAAGGGAGATGTCGGGGAGGTCAA
GCCCGAGGGGGAATTAACGAAGGTAGAGGCCGGGACGAGTGCAGACGGTG
AAGTGGATGAGGCGTACGAGGCAGCTGGGATCCAGGATGGGGAGCACCGG
GTTTACGTATGAATGGCCGTTCAAGTGGGAGTTTGAGGCGGCGCAGACTG
AGATCGCCGATCCCGCGATGGCCGCTTCCGAGCTCTTGCAGCAGCAGGCC
CAGCTCGAGGGAGACGTGGGCGAAGCGGCTAGGGTGGCGCTTGAGGCCGA
GAGGCAAGAGGAAGCCGAAGCCGCCCAAAAAGCGGACAAAGAAATGGCCT
TTGCCCAGGCATTCGCTACCGCGGCCGCTCCCTTGCCGGGGGTTCCTCTG
AGTGCCTCTTTGGATGTTCCTTTGGGTGTCCCTTTAGATGTCCCACTGGA
GGTGCTGTCGAAGGTCAATGCGGACGGCGCAGCGTCCTCGTTGGAAGGTA
AGGTTGGAGAGGCTGGGCTCCGGTTGAAGTACAAGGATGGTGTGGAAGAG
GCGTTCTGGGAATTGGGTCGCTATGGACCGACGACGGCGGAGGTGGAGGA
GGAGCCCCTTGGAGAAACAGAAACGGCAACAGAGGTCGACGAGGACAGTG
TAGACCTGAAGGACGATGAAGTGACGGTACTGTTCGAGGACAAGGGAGAT
GTCGGGGAGGTCAAGCCCGAGGGGGAATTAACGAAGGTAGAGGCCGGGAC
GAGTGCAGACGGTGAAGTGGATGAGGCGTACGAGGCAGCTGGGATCCAGG
ATGGGGAGCACCGGGTTTACGTATGA
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