mRNA_H-elongata_contig47272.11836.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig47272.11836.1 vs. uniprot
Match: D7G0W6_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0W6_ECTSI) HSP 1 Score: 193 bits (491), Expect = 4.050e-62 Identity = 96/101 (95.05%), Postives = 97/101 (96.04%), Query Frame = 1
Query: 1 MRLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYEDIYDAKGAVDHLSGFNVCGRYLIVLYYQPAKKQKRMDQQTKKKELE 303
MRLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVY+DIYDAK AVDHLSGFNVCGRYLIVLYYQPAK KRMDQQ KKKELE
Sbjct: 1 MRLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYDDIYDAKAAVDHLSGFNVCGRYLIVLYYQPAKMAKRMDQQAKKKELE 101
BLAST of mRNA_H-elongata_contig47272.11836.1 vs. uniprot
Match: A0A6S9GFW4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9GFW4_HETAK) HSP 1 Score: 172 bits (437), Expect = 7.370e-54 Identity = 81/100 (81.00%), Postives = 93/100 (93.00%), Query Frame = 1
Query: 4 RLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYEDIYDAKGAVDHLSGFNVCGRYLIVLYYQPAKKQKRMDQQTKKKELE 303
RLPPEVNR +YVRNLPFKI+A+EMYDIFGKYGAIRQIR+GD+ DT+GTAFVVYEDIYDAK AVDHLSGFNVCGRYLIVLYYQP + K+MDQ+ +++ELE
Sbjct: 12 RLPPEVNRVLYVRNLPFKITAEEMYDIFGKYGAIRQIRIGDKPDTKGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLIVLYYQPTRMAKKMDQERERRELE 111
BLAST of mRNA_H-elongata_contig47272.11836.1 vs. uniprot
Match: A0A7S2DAY0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DAY0_9STRA) HSP 1 Score: 172 bits (437), Expect = 8.110e-54 Identity = 82/100 (82.00%), Postives = 92/100 (92.00%), Query Frame = 1
Query: 4 RLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYEDIYDAKGAVDHLSGFNVCGRYLIVLYYQPAKKQKRMDQQTKKKELE 303
RLPPEVNR +YVRNLPFKI+++EMYDIFGKYGAIRQIR+GD+ DTRGTAFVVYEDIYDAK AVDHLSGFNVCGRYL+VLYYQ ++ QKRMD K+KELE
Sbjct: 14 RLPPEVNRVLYVRNLPFKITSEEMYDIFGKYGAIRQIRVGDKPDTRGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLVVLYYQASRMQKRMDNDKKRKELE 113
BLAST of mRNA_H-elongata_contig47272.11836.1 vs. uniprot
Match: A0A835YN30_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN30_9STRA) HSP 1 Score: 172 bits (435), Expect = 1.490e-53 Identity = 83/100 (83.00%), Postives = 91/100 (91.00%), Query Frame = 1
Query: 4 RLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYEDIYDAKGAVDHLSGFNVCGRYLIVLYYQPAKKQKRMDQQTKKKELE 303
RLPPEVNR +YVRNLPFKI+ADEMYDIFGKYGAIRQIRLGD+ DTRGTAFVVYEDIYDAK AVDHLSGFNVCGRYLIVLYYQ K KR+D+ K++E+E
Sbjct: 11 RLPPEVNRILYVRNLPFKITADEMYDIFGKYGAIRQIRLGDKPDTRGTAFVVYEDIYDAKAAVDHLSGFNVCGRYLIVLYYQSTKALKRVDEMKKRREIE 110
BLAST of mRNA_H-elongata_contig47272.11836.1 vs. uniprot
Match: A0A7S2S8J7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S8J7_9STRA) HSP 1 Score: 172 bits (435), Expect = 1.740e-53 Identity = 81/100 (81.00%), Postives = 93/100 (93.00%), Query Frame = 1
Query: 4 RLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYEDIYDAKGAVDHLSGFNVCGRYLIVLYYQPAKKQKRMDQQTKKKELE 303
RLPPEVNR VYVRNLPFKISA+E+YDIFGKYGA+RQ+RLGD+ DTRGTAFVVYEDIYDAK AVDHL+GFNVCGRYL+VLYYQ +K Q+R+D Q K++ELE
Sbjct: 16 RLPPEVNRVVYVRNLPFKISAEEIYDIFGKYGALRQVRLGDKPDTRGTAFVVYEDIYDAKNAVDHLNGFNVCGRYLVVLYYQASKMQERIDNQRKRQELE 115
BLAST of mRNA_H-elongata_contig47272.11836.1 vs. uniprot
Match: R1DMS8_EMIHU (RRM domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DMS8_EMIHU) HSP 1 Score: 171 bits (432), Expect = 5.000e-53 Identity = 82/100 (82.00%), Postives = 92/100 (92.00%), Query Frame = 1
Query: 1 MRLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYEDIYDAKGAVDHLSGFNVCGRYLIVLYYQPAKKQKRMDQQTKKKEL 300
MRLPPEVNRA+YVRNLPFKI+A+EMYDIFGK+GAIRQIRLG+ DTRGTAFVVYEDIYDAK AVDHLSGFNVCGRYL+VLYYQ K QKR+D + ++KEL
Sbjct: 10 MRLPPEVNRALYVRNLPFKITAEEMYDIFGKFGAIRQIRLGNASDTRGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLVVLYYQQTKMQKRLDTEREQKEL 109
BLAST of mRNA_H-elongata_contig47272.11836.1 vs. uniprot
Match: A0A7S2C985_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C985_9STRA) HSP 1 Score: 170 bits (430), Expect = 9.160e-53 Identity = 80/100 (80.00%), Postives = 92/100 (92.00%), Query Frame = 1
Query: 4 RLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYEDIYDAKGAVDHLSGFNVCGRYLIVLYYQPAKKQKRMDQQTKKKELE 303
RLPPEVNR +Y+RNLPFKI+++EMYDIFGKYGAIRQIR+GD+ DTRGTAFVVYEDIYDAK AVDHLSGFNVCGRYLIVLYYQ A+ +KR+D K++ELE
Sbjct: 12 RLPPEVNRVLYIRNLPFKITSEEMYDIFGKYGAIRQIRVGDKPDTRGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLIVLYYQAARMEKRIDNDKKRRELE 111
BLAST of mRNA_H-elongata_contig47272.11836.1 vs. uniprot
Match: A0A7S2JD52_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2JD52_9EUKA) HSP 1 Score: 167 bits (424), Expect = 8.010e-52 Identity = 81/99 (81.82%), Postives = 91/99 (91.92%), Query Frame = 1
Query: 4 RLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYEDIYDAKGAVDHLSGFNVCGRYLIVLYYQPAKKQKRMDQQTKKKEL 300
RLPPEVNRA+YVRNLPFKI+A+EMYDIFGK+GAIRQIRLG+ QDTRGTAFVVYEDIYDAK AVDHLSGFNVCGRYL+VLY+Q K QKR+D + + KEL
Sbjct: 10 RLPPEVNRALYVRNLPFKITAEEMYDIFGKFGAIRQIRLGNAQDTRGTAFVVYEDIYDAKTAVDHLSGFNVCGRYLVVLYFQQTKMQKRLDTEREMKEL 108
BLAST of mRNA_H-elongata_contig47272.11836.1 vs. uniprot
Match: A0A7S3SDL9_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3SDL9_9SPIT) HSP 1 Score: 167 bits (424), Expect = 8.270e-52 Identity = 79/100 (79.00%), Postives = 91/100 (91.00%), Query Frame = 1
Query: 1 MRLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYEDIYDAKGAVDHLSGFNVCGRYLIVLYYQPAKKQKRMDQQTKKKEL 300
+RLPPEVNRA+YVRNLPFKISA+EMYDIFGK+GA+RQ+RLG DTRGTAFVVYEDIYDAK AVDHLSGFNVCGRYL+VLYYQ K QKR+D + +++EL
Sbjct: 16 LRLPPEVNRALYVRNLPFKISAEEMYDIFGKFGALRQVRLGSAPDTRGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLVVLYYQQTKMQKRLDTEREQREL 115
BLAST of mRNA_H-elongata_contig47272.11836.1 vs. uniprot
Match: A0A7S4EVP5_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4EVP5_CHRCT) HSP 1 Score: 167 bits (422), Expect = 1.420e-51 Identity = 79/100 (79.00%), Postives = 91/100 (91.00%), Query Frame = 1
Query: 1 MRLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYEDIYDAKGAVDHLSGFNVCGRYLIVLYYQPAKKQKRMDQQTKKKEL 300
+RLPPEVNRA+YVRNLPFKI+ +EMYDIFGK+GAIRQIRLG+ DTRGTAFVVYEDIYDAK AVDHLSGFNVCGRYL+VLYYQ K QKR+D + +++EL
Sbjct: 9 LRLPPEVNRALYVRNLPFKITTEEMYDIFGKFGAIRQIRLGNASDTRGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLVVLYYQQTKMQKRLDTEKEQREL 108 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47272.11836.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig47272.11836.1 >prot_H-elongata_contig47272.11836.1 ID=prot_H-elongata_contig47272.11836.1|Name=mRNA_H-elongata_contig47272.11836.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp MRLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAback to top mRNA from alignment at H-elongata_contig47272:2605..4294+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig47272.11836.1 ID=mRNA_H-elongata_contig47272.11836.1|Name=mRNA_H-elongata_contig47272.11836.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1690bp|location=Sequence derived from alignment at H-elongata_contig47272:2605..4294+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig47272:2605..4294+ >mRNA_H-elongata_contig47272.11836.1 ID=mRNA_H-elongata_contig47272.11836.1|Name=mRNA_H-elongata_contig47272.11836.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig47272:2605..4294+ (Himanthalia elongata Himel1 dioecious)back to top |