mRNA_H-elongata_contig47226.11830.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig47226.11830.1
Unique NamemRNA_H-elongata_contig47226.11830.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig47226.11830.1 vs. uniprot
Match: A0A6H5KCV2_9PHAE (TOP1Ac domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCV2_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 4.790e-14
Identity = 44/62 (70.97%), Postives = 51/62 (82.26%), Query Frame = 1 
Query:    1 LGSDKAAAIATAAASALSLSAISVEKRRVRRKPPAPFITSTLQQEASRKLGLGVSQTMRTAQ 186
            LGS+KA+A+A   AS  SL  + V+KRRVRR+PPAPFITSTLQQE+SRKL LGV QTMR AQ
Sbjct:   58 LGSEKASAVA---ASLSSLEVLKVDKRRVRRQPPAPFITSTLQQESSRKLRLGVDQTMRAAQ 116
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BLAST of mRNA_H-elongata_contig47226.11830.1 vs. uniprot
Match: D8LDU2_ECTSI (DNA topoisomerase (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU2_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 4.810e-14
Identity = 44/62 (70.97%), Postives = 51/62 (82.26%), Query Frame = 1 
Query:    1 LGSDKAAAIATAAASALSLSAISVEKRRVRRKPPAPFITSTLQQEASRKLGLGVSQTMRTAQ 186
            LGS+KA+A+A   AS  SL  + V+KRRVRR+PPAPFITSTLQQE+SRKL LGV QTMR AQ
Sbjct:  357 LGSEKASAVA---ASLSSLEVLKVDKRRVRRQPPAPFITSTLQQESSRKLRLGVDQTMRAAQ 415
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BLAST of mRNA_H-elongata_contig47226.11830.1 vs. uniprot
Match: A0A1G6MCS0_9PROT (DNA topoisomerase 1 n=6 Tax=Belnapia TaxID=365532 RepID=A0A1G6MCS0_9PROT)

HSP 1 Score: 72.8 bits (177), Expect = 1.680e-13
Identity = 43/60 (71.67%), Postives = 49/60 (81.67%), Query Frame = 1 
Query:   10 DKAAAI-ATAAASALSLSAISVEKRRVRRKPPAPFITSTLQQEASRKLGLGVSQTMRTAQ 186
            D+A+A+ A AA  A + S +SVEKRRVRR PPAPF TSTLQQEASRKLG+G  QTMRTAQ
Sbjct:  227 DEASAMRAKAAVEAGTFSVVSVEKRRVRRNPPAPFTTSTLQQEASRKLGMGAQQTMRTAQ 286
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BLAST of mRNA_H-elongata_contig47226.11830.1 vs. uniprot
Match: A0A6J4JKK1_9PROT (DNA topoisomerase 1 n=1 Tax=uncultured Acetobacteraceae bacterium TaxID=169975 RepID=A0A6J4JKK1_9PROT)

HSP 1 Score: 71.2 bits (173), Expect = 5.840e-13
Identity = 42/62 (67.74%), Postives = 46/62 (74.19%), Query Frame = 1 
Query:    1 LGSDKAAAIATAAASALSLSAISVEKRRVRRKPPAPFITSTLQQEASRKLGLGVSQTMRTAQ 186
            L ++ AA  A +A  A   S +SVEKRRVRR PPAPF TSTLQQEASRKLG G  QTMRTAQ
Sbjct:  225 LPNEAAAVRAKSAVEAGEFSVLSVEKRRVRRNPPAPFTTSTLQQEASRKLGFGAQQTMRTAQ 286
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BLAST of mRNA_H-elongata_contig47226.11830.1 vs. uniprot
Match: A0A4Q3STJ1_9CAUL (DNA topoisomerase (Fragment) n=1 Tax=Caulobacteraceae bacterium TaxID=1978230 RepID=A0A4Q3STJ1_9CAUL)

HSP 1 Score: 70.9 bits (172), Expect = 7.900e-13
Identity = 40/53 (75.47%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:   28 ATAAASALSLSAISVEKRRVRRKPPAPFITSTLQQEASRKLGLGVSQTMRTAQ 186
            A AA  A + S ISVEKRRV+R PPAPF TSTLQQEASRKLG G  QTMRTAQ
Sbjct:  234 AKAAVEAGTFSVISVEKRRVKRNPPAPFTTSTLQQEASRKLGFGAQQTMRTAQ 286
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BLAST of mRNA_H-elongata_contig47226.11830.1 vs. uniprot
Match: A0A849MVI0_9PROT (DNA topoisomerase 1 n=2 Tax=unclassified Roseicella TaxID=2730924 RepID=A0A849MVI0_9PROT)

HSP 1 Score: 70.9 bits (172), Expect = 7.980e-13
Identity = 42/60 (70.00%), Postives = 48/60 (80.00%), Query Frame = 1 
Query:   10 DKAAAI-ATAAASALSLSAISVEKRRVRRKPPAPFITSTLQQEASRKLGLGVSQTMRTAQ 186
            D+A+A+ A AA  A + S +SVEKRRVRR PP PF TSTLQQEASRKLG+G  QTMRTAQ
Sbjct:  227 DEASALRAKAAVEAGTFSVLSVEKRRVRRNPPPPFTTSTLQQEASRKLGMGAQQTMRTAQ 286
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BLAST of mRNA_H-elongata_contig47226.11830.1 vs. uniprot
Match: A0A327M7B5_9PROT (DNA topoisomerase 1 n=5 Tax=Acetobacteraceae TaxID=433 RepID=A0A327M7B5_9PROT)

HSP 1 Score: 70.9 bits (172), Expect = 7.980e-13
Identity = 42/60 (70.00%), Postives = 48/60 (80.00%), Query Frame = 1 
Query:   10 DKAAAI-ATAAASALSLSAISVEKRRVRRKPPAPFITSTLQQEASRKLGLGVSQTMRTAQ 186
            D+A+A+ A AA  A + S +SVEKRRVRR PP PF TSTLQQEASRKLG+G  QTMRTAQ
Sbjct:  227 DEASALRAKAAVEAGTFSVLSVEKRRVRRNPPPPFTTSTLQQEASRKLGMGAQQTMRTAQ 286
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BLAST of mRNA_H-elongata_contig47226.11830.1 vs. uniprot
Match: UPI0011832222 (type I DNA topoisomerase n=1 Tax=Elioraea rosea TaxID=2492390 RepID=UPI0011832222)

HSP 1 Score: 68.6 bits (166), Expect = 5.190e-12
Identity = 39/62 (62.90%), Postives = 46/62 (74.19%), Query Frame = 1 
Query:    1 LGSDKAAAIATAAASALSLSAISVEKRRVRRKPPAPFITSTLQQEASRKLGLGVSQTMRTAQ 186
            LG +KAA  A + A A +    SVEK+RVRR PPAPF TSTLQQEA+RKLG   ++TMRTAQ
Sbjct:  225 LGDEKAAKAAVSRAEAAAYRIASVEKKRVRRNPPAPFTTSTLQQEAARKLGFSATRTMRTAQ 286
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BLAST of mRNA_H-elongata_contig47226.11830.1 vs. uniprot
Match: UPI001080F5B5 (type I DNA topoisomerase n=1 Tax=Crenalkalicoccus roseus TaxID=1485588 RepID=UPI001080F5B5)

HSP 1 Score: 66.6 bits (161), Expect = 2.480e-11
Identity = 41/60 (68.33%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:   10 DKAAAI-ATAAASALSLSAISVEKRRVRRKPPAPFITSTLQQEASRKLGLGVSQTMRTAQ 186
            D+AAA+ A AA  A + S  SVE++RVRR PP PF TSTLQQEASRKLGLG  QTMR AQ
Sbjct:  227 DEAAAMRAKAAVEAGAFSVASVERKRVRRNPPPPFTTSTLQQEASRKLGLGAQQTMRLAQ 286
[Close]
BLAST of mRNA_H-elongata_contig47226.11830.1 vs. uniprot
Match: A0A8J2Y0H5_9PROT (DNA topoisomerase 1 n=1 Tax=Siccirubricoccus deserti TaxID=2013562 RepID=A0A8J2Y0H5_9PROT)

HSP 1 Score: 66.2 bits (160), Expect = 3.380e-11
Identity = 40/60 (66.67%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:   10 DKAAAI-ATAAASALSLSAISVEKRRVRRKPPAPFITSTLQQEASRKLGLGVSQTMRTAQ 186
            D+A+A+ A AA  A   S +SVEKRRVRR PP PF TSTLQ EASRKLG+G  Q MRTAQ
Sbjct:  227 DEASAMRAKAAVEADEFSVLSVEKRRVRRNPPPPFTTSTLQMEASRKLGMGAQQAMRTAQ 286
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47226.11830.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KCV2_9PHAE4.790e-1470.97TOP1Ac domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LDU2_ECTSI4.810e-1470.97DNA topoisomerase (Fragment) n=1 Tax=Ectocarpus si... [more]
A0A1G6MCS0_9PROT1.680e-1371.67DNA topoisomerase 1 n=6 Tax=Belnapia TaxID=365532 ... [more]
A0A6J4JKK1_9PROT5.840e-1367.74DNA topoisomerase 1 n=1 Tax=uncultured Acetobacter... [more]
A0A4Q3STJ1_9CAUL7.900e-1375.47DNA topoisomerase (Fragment) n=1 Tax=Caulobacterac... [more]
A0A849MVI0_9PROT7.980e-1370.00DNA topoisomerase 1 n=2 Tax=unclassified Roseicell... [more]
A0A327M7B5_9PROT7.980e-1370.00DNA topoisomerase 1 n=5 Tax=Acetobacteraceae TaxID... [more]
UPI00118322225.190e-1262.90type I DNA topoisomerase n=1 Tax=Elioraea rosea Ta... [more]
UPI001080F5B52.480e-1168.33type I DNA topoisomerase n=1 Tax=Crenalkalicoccus ... [more]
A0A8J2Y0H5_9PROT3.380e-1166.67DNA topoisomerase 1 n=1 Tax=Siccirubricoccus deser... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig47226contigH-elongata_contig47226:4001..4186 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.6
Seed ortholog evalue1.2e-12
Seed eggNOG ortholog2880.D8LDU2
KEGG koko:K03168
EggNOG free text desc.DNA topoisomerase type I activity
EggNOG OGsCOG0550@1,KOG1956@2759
EC5.99.1.2
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons1
Model size186
Cds size186
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930779.4691837-CDS-H-elongata_contig47226:4000..41861622930779.4691837-CDS-H-elongata_contig47226:4000..4186Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47226 4001..4186 +
1691679566.583396-CDS-H-elongata_contig47226:4000..41861691679566.583396-CDS-H-elongata_contig47226:4000..4186Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47226 4001..4186 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig47226.11830.1prot_H-elongata_contig47226.11830.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig47226 4001..4186 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig47226.11830.1

>prot_H-elongata_contig47226.11830.1 ID=prot_H-elongata_contig47226.11830.1|Name=mRNA_H-elongata_contig47226.11830.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=62bp
LGSDKAAAIATAAASALSLSAISVEKRRVRRKPPAPFITSTLQQEASRKL
GLGVSQTMRTAQ
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mRNA from alignment at H-elongata_contig47226:4001..4186+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig47226.11830.1 ID=mRNA_H-elongata_contig47226.11830.1|Name=mRNA_H-elongata_contig47226.11830.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=186bp|location=Sequence derived from alignment at H-elongata_contig47226:4001..4186+ (Himanthalia elongata Himel1 dioecious)
TTGGGGTCCGACAAGGCAGCAGCTATCGCGACAGCTGCGGCTTCCGCGCT
GTCTCTCTCTGCGATCTCGGTCGAAAAAAGGCGGGTCAGAAGGAAACCGC
CGGCGCCGTTCATCACGTCCACCCTGCAGCAGGAGGCCAGTAGGAAGCTC
GGGCTGGGGGTCTCGCAGACGATGAGGACGGCACAG
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Coding sequence (CDS) from alignment at H-elongata_contig47226:4001..4186+

>mRNA_H-elongata_contig47226.11830.1 ID=mRNA_H-elongata_contig47226.11830.1|Name=mRNA_H-elongata_contig47226.11830.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=372bp|location=Sequence derived from alignment at H-elongata_contig47226:4001..4186+ (Himanthalia elongata Himel1 dioecious)
TTGGGGTCCGACAAGGCAGCAGCTATCGCGACAGCTGCGGCTTCCGCGCT
GTCTCTCTCTGCGATCTCGGTCGAAAAAAGGCGGGTCAGAAGGAAACCGC
CGGCGCCGTTCATCACGTCCACCCTGCAGCAGGAGGCCAGTAGGAAGCTC
GGGCTGGGGGTCTCGCAGACGATGAGGACGGCACAGTTGGGGTCCGACAA
GGCAGCAGCTATCGCGACAGCTGCGGCTTCCGCGCTGTCTCTCTCTGCGA
TCTCGGTCGAAAAAAGGCGGGTCAGAAGGAAACCGCCGGCGCCGTTCATC
ACGTCCACCCTGCAGCAGGAGGCCAGTAGGAAGCTCGGGCTGGGGGTCTC
GCAGACGATGAGGACGGCACAG
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