mRNA_H-elongata_contig47188.11824.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig47188.11824.1 vs. uniprot
Match: D7FVY5_ECTSI (Flagellar associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVY5_ECTSI) HSP 1 Score: 353 bits (905), Expect = 1.510e-114 Identity = 204/298 (68.46%), Postives = 238/298 (79.87%), Query Frame = 1
Query: 1 QSITVRDVDISTEDVSRLRRAWKASSF---------------SSPATVFGA--SPNDLEPVGGIIEGG---VEDNVRFVFAGRDLEEGQPLERYSLGGGSTVQLLGRLKGGAQLGKVVKGRSQAKKKGQDRPKEYAELQSKYAKMQEIDMARQQSMIAKADLRRRLEQENKNTKLNRLKIQNQWRKIMRLAKVESLRKNIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQAALRTHLQKMDGLIDLQDSRLLALEQEFEAELETLQGEFADEREHVAIQHAAQIQELSDIVAAVE 834
Q ITVRDVD+ T+DVSRLR+AW A+ + SS T+ S D + G GG ++ ++R VFAG+DL+ G+PL Y L STV +LGRL+GGAQLGKVVKGRSQ KKKG ++PKEYAELQ+KYAKMQE+DMARQQ++ AKA+LRRR++QE KN+K+NRLKIQNQWRKIMRLAKVESLRK+IEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQ ALR HLQ MD LIDLQDSRLLALEQEFE EL+TLQ EFA+ER+HV QHAA++QELSDI+AAVE
Sbjct: 25 QCITVRDVDLCTDDVSRLRQAWGANIYPGADGGCVSSDPPWLSSQRTIANKRRSSTDFDKHVGEDGGGDTIIDADIRLVFAGKDLQRGRPLLGYGLQADSTVHVLGRLRGGAQLGKVVKGRSQVKKKGAEKPKEYAELQAKYAKMQEMDMARQQAIAAKAELRRRIDQEEKNSKMNRLKIQNQWRKIMRLAKVESLRKDIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQTALRAHLQNMDQLIDLQDSRLLALEQEFEVELKTLQKEFAEERKHVVKQHAAEVQELSDIIAAVE 322
BLAST of mRNA_H-elongata_contig47188.11824.1 vs. uniprot
Match: A0A6H5L6H2_9PHAE (Ubiquitin-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6H2_9PHAE) HSP 1 Score: 330 bits (846), Expect = 4.200e-108 Identity = 200/314 (63.69%), Postives = 234/314 (74.52%), Query Frame = 1
Query: 1 QSITVRDVDISTEDVSRLRRAWKASSF---------SSPATVFG--------ASPNDLEPVGGIIEGG---VEDNVRFVFAGRDLEEGQPLERYSLGGGSTVQLLGRLKGGAQLGKVVKGRSQAKKKGQDRPKEYAELQSKYAKMQEIDMARQQSMIAKADLRRRLEQENKNTKLNRLKIQNQWRKIMRLAKV----------------ESLRKNIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQAALRTHLQKMDGLIDLQDSRLLALEQEFEAELETLQGEFADEREHVAIQHAAQIQELSDIVAAVE 834
Q ITVRDVD+ T+DVSRLR+A AS + S P + S D + G GG ++ ++R VFAG+DL++G+PL Y L STV +LGRL+GGAQLGKVVKGRSQ KKKG ++PKEYAELQ+KYAKMQE+DMAR ++ AKA+LRRR+++E KN+K+NRLKIQNQWRKIMRLAKV ESLRK+IEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQ ALR HLQ MD LIDLQDSRLLALEQEFE EL+TLQ EFA+ER HV QHAA++QELSDI+AAVE
Sbjct: 13 QCITVRDVDLCTDDVSRLRQACGASIYPGADGGCVSSDPPWLSSHRTRANRRRSSTDCDKNVGEDGGGDATIDADIRLVFAGKDLQKGRPLLGYGLQADSTVHVLGRLRGGAQLGKVVKGRSQVKKKGAEKPKEYAELQAKYAKMQEMDMARSGAIAAKAELRRRIDKEEKNSKMNRLKIQNQWRKIMRLAKVTKKRPGGLVLTAQDRVESLRKDIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQTALRAHLQNMDQLIDLQDSRLLALEQEFEVELKTLQREFAEERNHVVKQHAAEVQELSDIIAAVE 326
BLAST of mRNA_H-elongata_contig47188.11824.1 vs. uniprot
Match: A0A835ZEY8_9STRA (Flagellar associated protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEY8_9STRA) HSP 1 Score: 256 bits (655), Expect = 8.700e-78 Identity = 144/221 (65.16%), Postives = 178/221 (80.54%), Query Frame = 1
Query: 172 FVFAGRDLEEGQPLERYSLGGGSTVQLLGRLKGGAQLGKVVKGRSQAKKKGQDRPKEYAELQSKYAKMQEIDMARQQSMIAKADLRRRLEQENKNTKLNRLKIQNQWRKIMRLAKVESLRKNIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQAALRTHLQKMDGLIDLQDSRLLALEQEFEAELETLQGEFADEREHVAIQHAAQIQELSDIVAAVE 834
VFAG+ + LE Y L GST+ +LGRL+GGAQLGKVVKGRSQ KKK + K++ +LQ+KY KMQE+D AR + A+ +L+RR+E E +N++ NRLKIQNQWRKIMRLAKVESLR++IEILSQNHERDVDRKDAIIQMLDRDLEEAEDQ+Q ALR HL MDGLIDLQD+RLL+LE+ FEAEL +++G F +ER VA +HA++ EL D+VA V+
Sbjct: 31 LVFAGKCMVPDVSLEEYGLQEGSTIHVLGRLRGGAQLGKVVKGRSQVKKKD-GKSKDFGDLQAKYNKMQELDAARLAAQAARMELQRRMEAEERNSRTNRLKIQNQWRKIMRLAKVESLRRDIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQYQTALRAHLHGMDGLIDLQDARLLSLERHFEAELVSMEGGFREERARVAARHASETAELRDVVAVVD 250
BLAST of mRNA_H-elongata_contig47188.11824.1 vs. uniprot
Match: A0A7S4D6K3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6K3_HETAK) HSP 1 Score: 226 bits (577), Expect = 2.550e-70 Identity = 130/228 (57.02%), Postives = 169/228 (74.12%), Query Frame = 1
Query: 151 GVEDNVRFVFAGRDLEEGQPLERYSLGGGSTVQLLGRLKGGAQLGKVVKGRSQAKKKGQDRPKEYAELQSKYAKMQEIDMARQQSMIAKADLRRRLEQENKNTKLNRLKIQNQWRKIMRLAKVESLRKNIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQAALRTHLQKMDGLIDLQDSRLLALEQEFEAELETLQGEFADEREHVAIQHAAQIQELSDIVAAVE 834
G D+ GR L + + Y L G+T+ + RL G A LGK +KG ++ + G +AEL+++YAKM+E D RQ++++ + +L+ R+EQE KN+K N+LKIQNQWRKIMRLAKVESL+K+IEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQ ALR HL+ +D LIDLQD+RLLALEQEFE EL L+ +F ER+ + QHA ++QEL D++A V+
Sbjct: 37 GEPDSYYLTQGGRGLLLNRTVADYGLRQGTTLDIQFRLTGAANLGKKIKGSAEQRAAGAP----FAELEARYAKMREADTLRQRALLKQQELKSRMEQEQKNSKTNQLKIQNQWRKIMRLAKVESLKKDIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQTALRAHLRNLDRLIDLQDARLLALEQEFEGELRELEADFNAERDQIREQHAREVQELRDVMAEVD 260
BLAST of mRNA_H-elongata_contig47188.11824.1 vs. uniprot
Match: A0A7S2BVH9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BVH9_9STRA) HSP 1 Score: 216 bits (550), Expect = 7.270e-63 Identity = 134/231 (58.01%), Postives = 168/231 (72.73%), Query Frame = 1
Query: 169 RFVFAGRDLEE---GQPLER------YSLGGGSTVQLLGRLKGGAQLGKVVKGRSQAKKKGQDRPKEYAELQSKYAKMQEIDMARQQSMIAKADLRRRLEQENKNTKLNRLKIQNQWRKIMRLAKVESLRKNIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQAALRTHLQKMDGLIDLQDSRLLALEQEFEAELETLQGEFADEREHVAIQHAAQIQELSDIVAAVE 834
R F GR+L+ G+ R + + GST+ LL RL G A LGK +KGR+ K+G + Q KYA+MQE Q+ + A+ +L+ R+EQE N+++NRLKIQNQWRKIMRLAKVE+LRK IEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQ +LR HL+ MD LIDLQD+RLLALEQEFE EL TL+ EF E++ + QHA ++QEL+DI++AV+
Sbjct: 4 RLCFGGRELQRYGNGKMAHRRMSLADHDVQEGSTLHLLFRLPGAALLGKQMKGRA---KQGDN--------QDKYARMQEQGALEQKYLAARNELKNRMEQERANSRVNRLKIQNQWRKIMRLAKVENLRKEIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQMSLRAHLENMDRLIDLQDTRLLALEQEFEKELYTLETEFGAEKDAIQKQHALEVQELNDIMSAVD 223
BLAST of mRNA_H-elongata_contig47188.11824.1 vs. uniprot
Match: F0Y381_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y381_AURAN) HSP 1 Score: 194 bits (493), Expect = 2.910e-55 Identity = 109/155 (70.32%), Postives = 128/155 (82.58%), Query Frame = 1
Query: 370 KMQEIDMARQQSMIAKADLRRRLEQENKNTKLNRLKIQNQWRKIMRLAKVESLRKNIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQAALRTHLQKMDGLIDLQDSRLLALEQEFEAELETLQGEFADEREHVAIQHAAQIQELSDIVAAVE 834
+ +E D Q+ A+ +L++R+EQE N+++NRLKIQNQWRKIMRLAKVESLRK IEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQ ALR+HLQ MD LIDLQDSRLL EQEFE EL TL+ EF E+E + QHA + QEL+DI++AVE
Sbjct: 2 RQREYDAQNQKYQAARNELKQRMEQEKANSRMNRLKIQNQWRKIMRLAKVESLRKGIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQMALRSHLQNMDQLIDLQDSRLLTSEQEFEQELHTLEAEFQAEKEAIVKQHALETQELNDIMSAVE 156
BLAST of mRNA_H-elongata_contig47188.11824.1 vs. uniprot
Match: A0A7S2HDB4_9STRA (Hypothetical protein (Fragment) n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HDB4_9STRA) HSP 1 Score: 194 bits (493), Expect = 1.280e-54 Identity = 123/229 (53.71%), Postives = 157/229 (68.56%), Query Frame = 1
Query: 169 RFVFAGRDLEEGQP--------LERYSLGGGSTVQLLGRLKGGAQLGKVVKGRSQAKKKGQDRPKEYAELQSKYAKMQEIDMARQQSMIAKADLRRRLEQENKNTKLNRLKIQNQWRKIMRLAKVESLRKNIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQAALRTHLQKMDGLIDLQDSRLLALEQEFEAELETLQGEFADEREHVAIQHAAQIQELSDIVAAV 831
R F GR+L L Y + ST+ L+ R+KG A LGK +KGR++A+ K Q YA+ +E + Q+ + A+ L+ RL QE N+++N+LKIQNQWRKIMR K E+L+K IEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQ +LR+HLQ MD LIDLQD+RLLALEQEFE +L TL+ +F ER+ + QHAA+++EL I+ AV
Sbjct: 45 RICFGGRELRRHSSGTTKTIFNLADYGVQDCSTLHLMLRVKGSALLGKPIKGRAKAQDKDQ------------YARNREQNEQEQKYLEARNALKLRLAQEQANSRINKLKIQNQWRKIMRPEKAETLKKEIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQMSLRSHLQNMDRLIDLQDTRLLALEQEFEKDLLTLEQDFGTERKAIIKQHAAEVEELEYIMDAV 261
BLAST of mRNA_H-elongata_contig47188.11824.1 vs. uniprot
Match: A0A8J2SCG7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SCG7_9STRA) HSP 1 Score: 195 bits (495), Expect = 1.520e-54 Identity = 117/203 (57.64%), Postives = 146/203 (71.92%), Query Frame = 1
Query: 226 LGGGSTVQLLGRLKGGAQLGKVVKGRSQAKKKGQDRPKEYAELQSKYAKMQEIDMARQQSMIAKADLRRRLEQENKNTKLNRLKIQNQWRKIMRLAKVESLRKNIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQAALRTHLQKMDGLIDLQDSRLLALEQEFEAELETLQGEFADEREHVAIQHAAQIQELSDIVAAVE 834
L GS + LL R+ GGA LGK +KGR+ +L+ K+ + +E D Q+ +A+ +L RR+EQE N ++N+LKIQNQWRKIMRLAKVESLRK IEILSQNHERDVDRKDAIIQMLDRDLEEAE QF +LR+HLQ +D LIDLQD+RLL EQEFE EL TL+ EF E+ + QH A +EL D++AA++
Sbjct: 59 LSDGSVLLLLPRMLGGALLGKSLKGRTPG-----------LDLEEKFMRQREYDAQNQKYQVARNELNRRMEQERANAQINQLKIQNQWRKIMRLAKVESLRKGIEILSQNHERDVDRKDAIIQMLDRDLEEAEGQFHMSLRSHLQNVDHLIDLQDTRLLKSEQEFEHELCTLEVEFQAEKGAIVKQHVANERELHDVIAAID 250
BLAST of mRNA_H-elongata_contig47188.11824.1 vs. uniprot
Match: A0A3L6VNT2_9STRA (NYD-SP28 domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VNT2_9STRA) HSP 1 Score: 183 bits (465), Expect = 1.210e-53 Identity = 112/207 (54.11%), Postives = 144/207 (69.57%), Query Frame = 1
Query: 223 SLGGGSTVQLLGRLKGGAQLGKVVKGRSQ---AKKKGQDRPKEYAELQSKYAKMQEIDMARQQSMIAKADLRRRLEQENKNTKLNRLKIQNQWRKIMRLAKVESLRKNIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQAALRTHLQKMDGLIDLQDSRLLALEQEFEAELETLQGEFADEREHVAIQHAAQIQELSDIVAAVE 834
S GGG + +++GGAQLGK VKG S+ KK G+ E L +++ D ++ ++ KA L+ +E+E K +K+N+LKIQN WRKIMRL KVE+LRK++EI SQNHERDVDRKDAIIQMLDRDLEEAE+QFQ ALR+HL +D LIDLQD RLL LE EFE +L L+ EF+ ER+ + QH + EL I+ AVE
Sbjct: 3 SSGGGKVYYVTRKVRGGAQLGKAVKGSSKDKKGKKDGKGMTDEERRLADSINRLEMSDYLKKLAVTKKAQLKEFMEKEQKISKMNKLKIQNHWRKIMRLVKVEALRKDVEIKSQNHERDVDRKDAIIQMLDRDLEEAEEQFQMALRSHLLNVDHLIDLQDGRLLGLEDEFEKDLHALEREFSVERDKIHKQHTVEKNELLSIMRAVE 209
BLAST of mRNA_H-elongata_contig47188.11824.1 vs. uniprot
Match: A0A024TIJ1_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TIJ1_9STRA) HSP 1 Score: 184 bits (467), Expect = 8.150e-51 Identity = 112/204 (54.90%), Postives = 144/204 (70.59%), Query Frame = 1
Query: 232 GGSTVQLLGRLKGGAQLGKVVKGRSQ---AKKKGQDRPKEYAELQSKYAKMQEIDMARQQSMIAKADLRRRLEQENKNTKLNRLKIQNQWRKIMRLAKVESLRKNIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQAALRTHLQKMDGLIDLQDSRLLALEQEFEAELETLQGEFADEREHVAIQHAAQIQELSDIVAAVE 834
GG + +L+GGAQLGK VKG S+ KK G+ E L ++++ D ++ ++ KA L+ +E+E+K +K+N+LKIQN WRKIMRL KVE LRK +EI SQNHERDVDRKDAIIQMLDRDLEEAE+QFQ ALR+HL +D LIDLQD RLL LE EFE +L L+ EF+ ER+ + QHA + EL +I+ AVE
Sbjct: 5 GGRVFHVARKLRGGAQLGKAVKGSSKDKKGKKDGKGMTDEERRLADSISRLEMNDYLKKLAVTKKAQLKEFMEKEHKISKMNKLKIQNHWRKIMRLVKVEGLRKEVEIKSQNHERDVDRKDAIIQMLDRDLEEAEEQFQMALRSHLLNVDQLIDLQDGRLLGLEDEFEKDLHALEREFSIERDKIHKQHAVEKNELLNIMRAVE 208 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47188.11824.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig47188.11824.1 >prot_H-elongata_contig47188.11824.1 ID=prot_H-elongata_contig47188.11824.1|Name=mRNA_H-elongata_contig47188.11824.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=278bp QSITVRDVDISTEDVSRLRRAWKASSFSSPATVFGASPNDLEPVGGIIEGback to top mRNA from alignment at H-elongata_contig47188:1609..4003+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig47188.11824.1 ID=mRNA_H-elongata_contig47188.11824.1|Name=mRNA_H-elongata_contig47188.11824.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2395bp|location=Sequence derived from alignment at H-elongata_contig47188:1609..4003+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig47188:1609..4003+ >mRNA_H-elongata_contig47188.11824.1 ID=mRNA_H-elongata_contig47188.11824.1|Name=mRNA_H-elongata_contig47188.11824.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1668bp|location=Sequence derived from alignment at H-elongata_contig47188:1609..4003+ (Himanthalia elongata Himel1 dioecious)back to top |