mRNA_H-elongata_contig47188.11824.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig47188.11824.1
Unique NamemRNA_H-elongata_contig47188.11824.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig47188.11824.1 vs. uniprot
Match: D7FVY5_ECTSI (Flagellar associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVY5_ECTSI)

HSP 1 Score: 353 bits (905), Expect = 1.510e-114
Identity = 204/298 (68.46%), Postives = 238/298 (79.87%), Query Frame = 1
Query:    1 QSITVRDVDISTEDVSRLRRAWKASSF---------------SSPATVFGA--SPNDLEPVGGIIEGG---VEDNVRFVFAGRDLEEGQPLERYSLGGGSTVQLLGRLKGGAQLGKVVKGRSQAKKKGQDRPKEYAELQSKYAKMQEIDMARQQSMIAKADLRRRLEQENKNTKLNRLKIQNQWRKIMRLAKVESLRKNIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQAALRTHLQKMDGLIDLQDSRLLALEQEFEAELETLQGEFADEREHVAIQHAAQIQELSDIVAAVE 834
            Q ITVRDVD+ T+DVSRLR+AW A+ +               SS  T+     S  D +   G   GG   ++ ++R VFAG+DL+ G+PL  Y L   STV +LGRL+GGAQLGKVVKGRSQ KKKG ++PKEYAELQ+KYAKMQE+DMARQQ++ AKA+LRRR++QE KN+K+NRLKIQNQWRKIMRLAKVESLRK+IEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQ ALR HLQ MD LIDLQDSRLLALEQEFE EL+TLQ EFA+ER+HV  QHAA++QELSDI+AAVE
Sbjct:   25 QCITVRDVDLCTDDVSRLRQAWGANIYPGADGGCVSSDPPWLSSQRTIANKRRSSTDFDKHVGEDGGGDTIIDADIRLVFAGKDLQRGRPLLGYGLQADSTVHVLGRLRGGAQLGKVVKGRSQVKKKGAEKPKEYAELQAKYAKMQEMDMARQQAIAAKAELRRRIDQEEKNSKMNRLKIQNQWRKIMRLAKVESLRKDIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQTALRAHLQNMDQLIDLQDSRLLALEQEFEVELKTLQKEFAEERKHVVKQHAAEVQELSDIIAAVE 322          
BLAST of mRNA_H-elongata_contig47188.11824.1 vs. uniprot
Match: A0A6H5L6H2_9PHAE (Ubiquitin-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6H2_9PHAE)

HSP 1 Score: 330 bits (846), Expect = 4.200e-108
Identity = 200/314 (63.69%), Postives = 234/314 (74.52%), Query Frame = 1
Query:    1 QSITVRDVDISTEDVSRLRRAWKASSF---------SSPATVFG--------ASPNDLEPVGGIIEGG---VEDNVRFVFAGRDLEEGQPLERYSLGGGSTVQLLGRLKGGAQLGKVVKGRSQAKKKGQDRPKEYAELQSKYAKMQEIDMARQQSMIAKADLRRRLEQENKNTKLNRLKIQNQWRKIMRLAKV----------------ESLRKNIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQAALRTHLQKMDGLIDLQDSRLLALEQEFEAELETLQGEFADEREHVAIQHAAQIQELSDIVAAVE 834
            Q ITVRDVD+ T+DVSRLR+A  AS +         S P  +           S  D +   G   GG   ++ ++R VFAG+DL++G+PL  Y L   STV +LGRL+GGAQLGKVVKGRSQ KKKG ++PKEYAELQ+KYAKMQE+DMAR  ++ AKA+LRRR+++E KN+K+NRLKIQNQWRKIMRLAKV                ESLRK+IEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQ ALR HLQ MD LIDLQDSRLLALEQEFE EL+TLQ EFA+ER HV  QHAA++QELSDI+AAVE
Sbjct:   13 QCITVRDVDLCTDDVSRLRQACGASIYPGADGGCVSSDPPWLSSHRTRANRRRSSTDCDKNVGEDGGGDATIDADIRLVFAGKDLQKGRPLLGYGLQADSTVHVLGRLRGGAQLGKVVKGRSQVKKKGAEKPKEYAELQAKYAKMQEMDMARSGAIAAKAELRRRIDKEEKNSKMNRLKIQNQWRKIMRLAKVTKKRPGGLVLTAQDRVESLRKDIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQTALRAHLQNMDQLIDLQDSRLLALEQEFEVELKTLQREFAEERNHVVKQHAAEVQELSDIIAAVE 326          
BLAST of mRNA_H-elongata_contig47188.11824.1 vs. uniprot
Match: A0A835ZEY8_9STRA (Flagellar associated protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEY8_9STRA)

HSP 1 Score: 256 bits (655), Expect = 8.700e-78
Identity = 144/221 (65.16%), Postives = 178/221 (80.54%), Query Frame = 1
Query:  172 FVFAGRDLEEGQPLERYSLGGGSTVQLLGRLKGGAQLGKVVKGRSQAKKKGQDRPKEYAELQSKYAKMQEIDMARQQSMIAKADLRRRLEQENKNTKLNRLKIQNQWRKIMRLAKVESLRKNIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQAALRTHLQKMDGLIDLQDSRLLALEQEFEAELETLQGEFADEREHVAIQHAAQIQELSDIVAAVE 834
             VFAG+ +     LE Y L  GST+ +LGRL+GGAQLGKVVKGRSQ KKK   + K++ +LQ+KY KMQE+D AR  +  A+ +L+RR+E E +N++ NRLKIQNQWRKIMRLAKVESLR++IEILSQNHERDVDRKDAIIQMLDRDLEEAEDQ+Q ALR HL  MDGLIDLQD+RLL+LE+ FEAEL +++G F +ER  VA +HA++  EL D+VA V+
Sbjct:   31 LVFAGKCMVPDVSLEEYGLQEGSTIHVLGRLRGGAQLGKVVKGRSQVKKKD-GKSKDFGDLQAKYNKMQELDAARLAAQAARMELQRRMEAEERNSRTNRLKIQNQWRKIMRLAKVESLRRDIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQYQTALRAHLHGMDGLIDLQDARLLSLERHFEAELVSMEGGFREERARVAARHASETAELRDVVAVVD 250          
BLAST of mRNA_H-elongata_contig47188.11824.1 vs. uniprot
Match: A0A7S4D6K3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6K3_HETAK)

HSP 1 Score: 226 bits (577), Expect = 2.550e-70
Identity = 130/228 (57.02%), Postives = 169/228 (74.12%), Query Frame = 1
Query:  151 GVEDNVRFVFAGRDLEEGQPLERYSLGGGSTVQLLGRLKGGAQLGKVVKGRSQAKKKGQDRPKEYAELQSKYAKMQEIDMARQQSMIAKADLRRRLEQENKNTKLNRLKIQNQWRKIMRLAKVESLRKNIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQAALRTHLQKMDGLIDLQDSRLLALEQEFEAELETLQGEFADEREHVAIQHAAQIQELSDIVAAVE 834
            G  D+      GR L   + +  Y L  G+T+ +  RL G A LGK +KG ++ +  G      +AEL+++YAKM+E D  RQ++++ + +L+ R+EQE KN+K N+LKIQNQWRKIMRLAKVESL+K+IEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQ ALR HL+ +D LIDLQD+RLLALEQEFE EL  L+ +F  ER+ +  QHA ++QEL D++A V+
Sbjct:   37 GEPDSYYLTQGGRGLLLNRTVADYGLRQGTTLDIQFRLTGAANLGKKIKGSAEQRAAGAP----FAELEARYAKMREADTLRQRALLKQQELKSRMEQEQKNSKTNQLKIQNQWRKIMRLAKVESLKKDIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQTALRAHLRNLDRLIDLQDARLLALEQEFEGELRELEADFNAERDQIREQHAREVQELRDVMAEVD 260          
BLAST of mRNA_H-elongata_contig47188.11824.1 vs. uniprot
Match: A0A7S2BVH9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BVH9_9STRA)

HSP 1 Score: 216 bits (550), Expect = 7.270e-63
Identity = 134/231 (58.01%), Postives = 168/231 (72.73%), Query Frame = 1
Query:  169 RFVFAGRDLEE---GQPLER------YSLGGGSTVQLLGRLKGGAQLGKVVKGRSQAKKKGQDRPKEYAELQSKYAKMQEIDMARQQSMIAKADLRRRLEQENKNTKLNRLKIQNQWRKIMRLAKVESLRKNIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQAALRTHLQKMDGLIDLQDSRLLALEQEFEAELETLQGEFADEREHVAIQHAAQIQELSDIVAAVE 834
            R  F GR+L+    G+   R      + +  GST+ LL RL G A LGK +KGR+   K+G +        Q KYA+MQE     Q+ + A+ +L+ R+EQE  N+++NRLKIQNQWRKIMRLAKVE+LRK IEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQ +LR HL+ MD LIDLQD+RLLALEQEFE EL TL+ EF  E++ +  QHA ++QEL+DI++AV+
Sbjct:    4 RLCFGGRELQRYGNGKMAHRRMSLADHDVQEGSTLHLLFRLPGAALLGKQMKGRA---KQGDN--------QDKYARMQEQGALEQKYLAARNELKNRMEQERANSRVNRLKIQNQWRKIMRLAKVENLRKEIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQMSLRAHLENMDRLIDLQDTRLLALEQEFEKELYTLETEFGAEKDAIQKQHALEVQELNDIMSAVD 223          
BLAST of mRNA_H-elongata_contig47188.11824.1 vs. uniprot
Match: F0Y381_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y381_AURAN)

HSP 1 Score: 194 bits (493), Expect = 2.910e-55
Identity = 109/155 (70.32%), Postives = 128/155 (82.58%), Query Frame = 1
Query:  370 KMQEIDMARQQSMIAKADLRRRLEQENKNTKLNRLKIQNQWRKIMRLAKVESLRKNIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQAALRTHLQKMDGLIDLQDSRLLALEQEFEAELETLQGEFADEREHVAIQHAAQIQELSDIVAAVE 834
            + +E D   Q+   A+ +L++R+EQE  N+++NRLKIQNQWRKIMRLAKVESLRK IEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQ ALR+HLQ MD LIDLQDSRLL  EQEFE EL TL+ EF  E+E +  QHA + QEL+DI++AVE
Sbjct:    2 RQREYDAQNQKYQAARNELKQRMEQEKANSRMNRLKIQNQWRKIMRLAKVESLRKGIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQMALRSHLQNMDQLIDLQDSRLLTSEQEFEQELHTLEAEFQAEKEAIVKQHALETQELNDIMSAVE 156          
BLAST of mRNA_H-elongata_contig47188.11824.1 vs. uniprot
Match: A0A7S2HDB4_9STRA (Hypothetical protein (Fragment) n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HDB4_9STRA)

HSP 1 Score: 194 bits (493), Expect = 1.280e-54
Identity = 123/229 (53.71%), Postives = 157/229 (68.56%), Query Frame = 1
Query:  169 RFVFAGRDLEEGQP--------LERYSLGGGSTVQLLGRLKGGAQLGKVVKGRSQAKKKGQDRPKEYAELQSKYAKMQEIDMARQQSMIAKADLRRRLEQENKNTKLNRLKIQNQWRKIMRLAKVESLRKNIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQAALRTHLQKMDGLIDLQDSRLLALEQEFEAELETLQGEFADEREHVAIQHAAQIQELSDIVAAV 831
            R  F GR+L             L  Y +   ST+ L+ R+KG A LGK +KGR++A+ K Q            YA+ +E +   Q+ + A+  L+ RL QE  N+++N+LKIQNQWRKIMR  K E+L+K IEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQ +LR+HLQ MD LIDLQD+RLLALEQEFE +L TL+ +F  ER+ +  QHAA+++EL  I+ AV
Sbjct:   45 RICFGGRELRRHSSGTTKTIFNLADYGVQDCSTLHLMLRVKGSALLGKPIKGRAKAQDKDQ------------YARNREQNEQEQKYLEARNALKLRLAQEQANSRINKLKIQNQWRKIMRPEKAETLKKEIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQMSLRSHLQNMDRLIDLQDTRLLALEQEFEKDLLTLEQDFGTERKAIIKQHAAEVEELEYIMDAV 261          
BLAST of mRNA_H-elongata_contig47188.11824.1 vs. uniprot
Match: A0A8J2SCG7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SCG7_9STRA)

HSP 1 Score: 195 bits (495), Expect = 1.520e-54
Identity = 117/203 (57.64%), Postives = 146/203 (71.92%), Query Frame = 1
Query:  226 LGGGSTVQLLGRLKGGAQLGKVVKGRSQAKKKGQDRPKEYAELQSKYAKMQEIDMARQQSMIAKADLRRRLEQENKNTKLNRLKIQNQWRKIMRLAKVESLRKNIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQAALRTHLQKMDGLIDLQDSRLLALEQEFEAELETLQGEFADEREHVAIQHAAQIQELSDIVAAVE 834
            L  GS + LL R+ GGA LGK +KGR+              +L+ K+ + +E D   Q+  +A+ +L RR+EQE  N ++N+LKIQNQWRKIMRLAKVESLRK IEILSQNHERDVDRKDAIIQMLDRDLEEAE QF  +LR+HLQ +D LIDLQD+RLL  EQEFE EL TL+ EF  E+  +  QH A  +EL D++AA++
Sbjct:   59 LSDGSVLLLLPRMLGGALLGKSLKGRTPG-----------LDLEEKFMRQREYDAQNQKYQVARNELNRRMEQERANAQINQLKIQNQWRKIMRLAKVESLRKGIEILSQNHERDVDRKDAIIQMLDRDLEEAEGQFHMSLRSHLQNVDHLIDLQDTRLLKSEQEFEHELCTLEVEFQAEKGAIVKQHVANERELHDVIAAID 250          
BLAST of mRNA_H-elongata_contig47188.11824.1 vs. uniprot
Match: A0A3L6VNT2_9STRA (NYD-SP28 domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VNT2_9STRA)

HSP 1 Score: 183 bits (465), Expect = 1.210e-53
Identity = 112/207 (54.11%), Postives = 144/207 (69.57%), Query Frame = 1
Query:  223 SLGGGSTVQLLGRLKGGAQLGKVVKGRSQ---AKKKGQDRPKEYAELQSKYAKMQEIDMARQQSMIAKADLRRRLEQENKNTKLNRLKIQNQWRKIMRLAKVESLRKNIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQAALRTHLQKMDGLIDLQDSRLLALEQEFEAELETLQGEFADEREHVAIQHAAQIQELSDIVAAVE 834
            S GGG    +  +++GGAQLGK VKG S+    KK G+    E   L     +++  D  ++ ++  KA L+  +E+E K +K+N+LKIQN WRKIMRL KVE+LRK++EI SQNHERDVDRKDAIIQMLDRDLEEAE+QFQ ALR+HL  +D LIDLQD RLL LE EFE +L  L+ EF+ ER+ +  QH  +  EL  I+ AVE
Sbjct:    3 SSGGGKVYYVTRKVRGGAQLGKAVKGSSKDKKGKKDGKGMTDEERRLADSINRLEMSDYLKKLAVTKKAQLKEFMEKEQKISKMNKLKIQNHWRKIMRLVKVEALRKDVEIKSQNHERDVDRKDAIIQMLDRDLEEAEEQFQMALRSHLLNVDHLIDLQDGRLLGLEDEFEKDLHALEREFSVERDKIHKQHTVEKNELLSIMRAVE 209          
BLAST of mRNA_H-elongata_contig47188.11824.1 vs. uniprot
Match: A0A024TIJ1_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TIJ1_9STRA)

HSP 1 Score: 184 bits (467), Expect = 8.150e-51
Identity = 112/204 (54.90%), Postives = 144/204 (70.59%), Query Frame = 1
Query:  232 GGSTVQLLGRLKGGAQLGKVVKGRSQ---AKKKGQDRPKEYAELQSKYAKMQEIDMARQQSMIAKADLRRRLEQENKNTKLNRLKIQNQWRKIMRLAKVESLRKNIEILSQNHERDVDRKDAIIQMLDRDLEEAEDQFQAALRTHLQKMDGLIDLQDSRLLALEQEFEAELETLQGEFADEREHVAIQHAAQIQELSDIVAAVE 834
            GG    +  +L+GGAQLGK VKG S+    KK G+    E   L    ++++  D  ++ ++  KA L+  +E+E+K +K+N+LKIQN WRKIMRL KVE LRK +EI SQNHERDVDRKDAIIQMLDRDLEEAE+QFQ ALR+HL  +D LIDLQD RLL LE EFE +L  L+ EF+ ER+ +  QHA +  EL +I+ AVE
Sbjct:    5 GGRVFHVARKLRGGAQLGKAVKGSSKDKKGKKDGKGMTDEERRLADSISRLEMNDYLKKLAVTKKAQLKEFMEKEHKISKMNKLKIQNHWRKIMRLVKVEGLRKEVEIKSQNHERDVDRKDAIIQMLDRDLEEAEEQFQMALRSHLLNVDQLIDLQDGRLLGLEDEFEKDLHALEREFSIERDKIHKQHAVEKNELLNIMRAVE 208          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47188.11824.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVY5_ECTSI1.510e-11468.46Flagellar associated protein n=1 Tax=Ectocarpus si... [more]
A0A6H5L6H2_9PHAE4.200e-10863.69Ubiquitin-like domain-containing protein n=1 Tax=E... [more]
A0A835ZEY8_9STRA8.700e-7865.16Flagellar associated protein n=1 Tax=Tribonema min... [more]
A0A7S4D6K3_HETAK2.550e-7057.02Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2BVH9_9STRA7.270e-6358.01Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
F0Y381_AURAN2.910e-5570.32Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S2HDB4_9STRA1.280e-5453.71Hypothetical protein (Fragment) n=2 Tax=Dictyocha ... [more]
A0A8J2SCG7_9STRA1.520e-5457.64Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A3L6VNT2_9STRA1.210e-5354.11NYD-SP28 domain-containing protein n=2 Tax=Aphanom... [more]
A0A024TIJ1_9STRA8.150e-5154.90Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig47188contigH-elongata_contig47188:1609..4003 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score353.2
Seed ortholog evalue1.1e-94
Seed eggNOG ortholog2880.D7FVY5
Preferred nameCCDC65
GOsGO:0000226,GO:0001578,GO:0003352,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006996,GO:0007010,GO:0007017,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0032838,GO:0032879,GO:0032886,GO:0034622,GO:0035082,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0050789,GO:0050794,GO:0051270,GO:0060271,GO:0060632,GO:0065003,GO:0065007,GO:0070286,GO:0070925,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038
EggNOG free text desc.regulation of cilium movement
EggNOG OGs2CMHW@1,2QQDD@2759
Ec32 ortholog descriptionflagellar associated protein
Ec32 orthologEc-01_002630.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons6
Model size834
Cds size834
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig47188.11824.1prot_H-elongata_contig47188.11824.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig47188 1609..4003 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930778.6187809-CDS-H-elongata_contig47188:1608..19171622930778.6187809-CDS-H-elongata_contig47188:1608..1917Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47188 1609..1917 +
1691679566.1393251-CDS-H-elongata_contig47188:1608..19171691679566.1393251-CDS-H-elongata_contig47188:1608..1917Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47188 1609..1917 +
1622930778.6352696-CDS-H-elongata_contig47188:2227..23131622930778.6352696-CDS-H-elongata_contig47188:2227..2313Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47188 2228..2313 +
1691679566.1489456-CDS-H-elongata_contig47188:2227..23131691679566.1489456-CDS-H-elongata_contig47188:2227..2313Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47188 2228..2313 +
1622930778.6581962-CDS-H-elongata_contig47188:2585..27061622930778.6581962-CDS-H-elongata_contig47188:2585..2706Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47188 2586..2706 +
1691679566.1567552-CDS-H-elongata_contig47188:2585..27061691679566.1567552-CDS-H-elongata_contig47188:2585..2706Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47188 2586..2706 +
1622930778.6760225-CDS-H-elongata_contig47188:3141..32461622930778.6760225-CDS-H-elongata_contig47188:3141..3246Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47188 3142..3246 +
1691679566.1644895-CDS-H-elongata_contig47188:3141..32461691679566.1644895-CDS-H-elongata_contig47188:3141..3246Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47188 3142..3246 +
1622930778.6925702-CDS-H-elongata_contig47188:3633..37621622930778.6925702-CDS-H-elongata_contig47188:3633..3762Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47188 3634..3762 +
1691679566.1765513-CDS-H-elongata_contig47188:3633..37621691679566.1765513-CDS-H-elongata_contig47188:3633..3762Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47188 3634..3762 +
1622930778.714791-CDS-H-elongata_contig47188:3919..40031622930778.714791-CDS-H-elongata_contig47188:3919..4003Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47188 3920..4003 +
1691679566.1865377-CDS-H-elongata_contig47188:3919..40031691679566.1865377-CDS-H-elongata_contig47188:3919..4003Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47188 3920..4003 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig47188.11824.1

>prot_H-elongata_contig47188.11824.1 ID=prot_H-elongata_contig47188.11824.1|Name=mRNA_H-elongata_contig47188.11824.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=278bp
QSITVRDVDISTEDVSRLRRAWKASSFSSPATVFGASPNDLEPVGGIIEG
GVEDNVRFVFAGRDLEEGQPLERYSLGGGSTVQLLGRLKGGAQLGKVVKG
RSQAKKKGQDRPKEYAELQSKYAKMQEIDMARQQSMIAKADLRRRLEQEN
KNTKLNRLKIQNQWRKIMRLAKVESLRKNIEILSQNHERDVDRKDAIIQM
LDRDLEEAEDQFQAALRTHLQKMDGLIDLQDSRLLALEQEFEAELETLQG
EFADEREHVAIQHAAQIQELSDIVAAVE
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mRNA from alignment at H-elongata_contig47188:1609..4003+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig47188.11824.1 ID=mRNA_H-elongata_contig47188.11824.1|Name=mRNA_H-elongata_contig47188.11824.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2395bp|location=Sequence derived from alignment at H-elongata_contig47188:1609..4003+ (Himanthalia elongata Himel1 dioecious)
CAGTCTATCACCGTGAGGGATGTCGATATATCGACCGAAGATGTCTCGAG GCTCCGGCGAGCGTGGAAAGCCAGCTCCTTTTCAAGTCCCGCGACAGTAT TTGGCGCAAGCCCGAACGATCTTGAGCCAGTCGGGGGGATAATCGAGGGT GGAGTGGAGGACAACGTACGATTTGTTTTCGCCGGAAGAGATCTGGAGGA AGGTCAGCCTCTCGAGCGGTACAGTCTCGGGGGTGGCAGTACAGTGCAGC TGCTCGGCAGGCTGAAGGGTGGGGCCCAGCTTGGCAAGGTCGTAAAGGGC AGAAGTCAGGTACGTGAGCCTTCAAACGGTCGGTTTTGTCTGAAATGGTT CTACAAACAACCGGGAAGACAGACACGTCGATATTATGCTCTCTGTGGTG CGACGGTTCGACGATGCAACGATGCAGACGGAGATGCTGTGATTTGTAGC TTCAGGTTACGGCGTGCAGTATACGACGAGGCGGTGCGAATGGATGCGAT GTTTCTGTACTAGGCTCCCACTATCAACCGAACGAACGAACGATATGGCG TACTGAGCGCCAAATACAGGTCGATTCTCATATTCAACCACCGCGCGCGG ATGATCAACCTCATATCAGGCCAAGAAAAAAGGACAGGACAGGCCAAAGG AATATGCGGAGCTGCAGTCGAAGTACGCCAAAATGCAGGAGATAGACATG GCCAGGTTCGCCCCGTTGTCGCTGTCCCGACACGGCAGAATAAGTAATCC GCCGTGTATGGTTTATCACGCTGTATCTCACGCACTCTTGTCCTGCTCTT CTCAAGGCTTTATGCATGTTAGGAAATGGCGAATTCATTGATGAAACCTT ACCCCGTTTTTGGCGGATGTTCGTTTGCGAGGGTACCACCAGCCTTTGGT TGTTGTTATTGTGATAAATACACAAGTATAAAAAATCCAGGTTTGCTTTC TACCTGATCGAAACGGCTCCGCGGCAGGCAGCAATCGATGATCGCCAAGG CAGATCTGCGCCGCCGCCTTGAACAGGAAAACAAGAACACCAAGTTGAAC CGGTTAAAGATCCAGAATCAATGGAGAAAAATAATGCGTCTGGCGAAGGT AATAGGGGCAAAATACATACTAGTATAGCTATGGGTGTCCTACCCGAGGG GGGAGAGTAATTTTGTCTTATTAATAGTACATAACAAAGTTTTGAACAAG ATCTACGACTATGGCAAGAATTAAAACATGGCGGGCGGAGGGGGGGCACA TACGACGCGTACCTGACCTGCAAAATTATTAGTCTATTCCAAACCCAGCT ACTGGTGTTACGCCATATTCCTGTGAGCCTGGGCATATTTTAGTTACCTT TATGACTAGAGTCTGGCTCGACGTAAAGTTGAAGGGGGTTAGCAAACGCC ATCCGACATAAGTTGGAAGAGGGCAGCGAATGAATCCAGATCATCCGTTG CCTCCATCGTAAGCCCCCTCCCTCCCCTCCCCTCCATAATTATCAAAATC GCCTGTATATTTCCTTTCTTTCCTCGCTAATAGGTTGAAAGCCTCCGGAA AAATATCGAGATCCTTTCCCAGAATCACGAGCGAGACGTAGACCGAAAGG ACGCCATCATCCAGATGCTTGACCGTGATTTAGAAGAGGTAAGTGACCAC TCTCAACGACAGCCAGTGTACTATGAGCGTACGCTTAGAGGTACTCCAAT GACCGAAGGCGGGCGGTTAAAAGGCTCAATACGTACATCCTCCAGGAAAG AACAACCCACTCGCAGGTATTCTGCGTCCTCTGGGACATCGCGATTCATA CGATCGTCCCTCCAGCGCTTCTCCTTTAAAACAGGAACTATCATCATGGC AGAAACCGAAGACGTTGGGAGGTTGACTTGGTGTACTCTACCTCTCATCG CTTGTCGCCGGGGTCAACCGTGACGATTTACGATATTTGGTACCTCACCA GGCGCCTCGGGTAGCTTTACCTCGGTGCACCATAACATTGGCAAACACCG GTATCGCCACCTGCGACGGTGACAGGCAGAGGATCAATTCCAGGCGGCCT TGAGGACTCATCTCCAGAAGATGGATGGACTCATCGACCTGCAAGACTCT AGATTGCTGGCCCTCGAACAGGAGTTTGAGGCGGAGCTGGAGACTCTTCA AGGGGTACGTAAATGAAAGGGCGGGGACGAGCGCAATCGAAATCGCATTT AGATGTGTTTCATCATCAATATTTTTGTATGAGTTCAATCGTCTCACAGT GATTAGAGCTTGCACCAACTTAGTCGCAATCACACTCGTCATTCGATGTT TGGATGGACAGGAATTTGCGGATGAGCGTGAGCATGTCGCCATCCAGCAC GCGGCCCAGATCCAAGAGTTAAGCGACATCGTCGCAGCCGTGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig47188:1609..4003+

>mRNA_H-elongata_contig47188.11824.1 ID=mRNA_H-elongata_contig47188.11824.1|Name=mRNA_H-elongata_contig47188.11824.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1668bp|location=Sequence derived from alignment at H-elongata_contig47188:1609..4003+ (Himanthalia elongata Himel1 dioecious)
CAGTCTATCACCGTGAGGGATGTCGATATATCGACCGAAGATGTCTCGAG
GCTCCGGCGAGCGTGGAAAGCCAGCTCCTTTTCAAGTCCCGCGACAGTAT
TTGGCGCAAGCCCGAACGATCTTGAGCCAGTCGGGGGGATAATCGAGGGT
GGAGTGGAGGACAACGTACGATTTGTTTTCGCCGGAAGAGATCTGGAGGA
AGGTCAGCCTCTCGAGCGGTACAGTCTCGGGGGTGGCAGTACAGTGCAGC
TGCTCGGCAGGCTGAAGGGTGGGGCCCAGCTTGGCAAGGTCGTAAAGGGC
AGAAGTCAGCAGTCTATCACCGTGAGGGATGTCGATATATCGACCGAAGA
TGTCTCGAGGCTCCGGCGAGCGTGGAAAGCCAGCTCCTTTTCAAGTCCCG
CGACAGTATTTGGCGCAAGCCCGAACGATCTTGAGCCAGTCGGGGGGATA
ATCGAGGGTGGAGTGGAGGACAACGTACGATTTGTTTTCGCCGGAAGAGA
TCTGGAGGAAGGTCAGCCTCTCGAGCGGTACAGTCTCGGGGGTGGCAGTA
CAGTGCAGCTGCTCGGCAGGCTGAAGGGTGGGGCCCAGCTTGGCAAGGTC
GTAAAGGGCAGAAGTCAGGCCAAGAAAAAAGGACAGGACAGGCCAAAGGA
ATATGCGGAGCTGCAGTCGAAGTACGCCAAAATGCAGGAGATAGACATGG
CCAGGCCAAGAAAAAAGGACAGGACAGGCCAAAGGAATATGCGGAGCTGC
AGTCGAAGTACGCCAAAATGCAGGAGATAGACATGGCCAGGCAGCAATCG
ATGATCGCCAAGGCAGATCTGCGCCGCCGCCTTGAACAGGAAAACAAGAA
CACCAAGTTGAACCGGTTAAAGATCCAGAATCAATGGAGAAAAATAATGC
GTCTGGCGAAGGCAGCAATCGATGATCGCCAAGGCAGATCTGCGCCGCCG
CCTTGAACAGGAAAACAAGAACACCAAGTTGAACCGGTTAAAGATCCAGA
ATCAATGGAGAAAAATAATGCGTCTGGCGAAGGTTGAAAGCCTCCGGAAA
AATATCGAGATCCTTTCCCAGAATCACGAGCGAGACGTAGACCGAAAGGA
CGCCATCATCCAGATGCTTGACCGTGATTTAGAAGAGGTTGAAAGCCTCC
GGAAAAATATCGAGATCCTTTCCCAGAATCACGAGCGAGACGTAGACCGA
AAGGACGCCATCATCCAGATGCTTGACCGTGATTTAGAAGAGGCAGAGGA
TCAATTCCAGGCGGCCTTGAGGACTCATCTCCAGAAGATGGATGGACTCA
TCGACCTGCAAGACTCTAGATTGCTGGCCCTCGAACAGGAGTTTGAGGCG
GAGCTGGAGACTCTTCAAGGGGCAGAGGATCAATTCCAGGCGGCCTTGAG
GACTCATCTCCAGAAGATGGATGGACTCATCGACCTGCAAGACTCTAGAT
TGCTGGCCCTCGAACAGGAGTTTGAGGCGGAGCTGGAGACTCTTCAAGGG
GAATTTGCGGATGAGCGTGAGCATGTCGCCATCCAGCACGCGGCCCAGAT
CCAAGAGTTAAGCGACATCGTCGCAGCCGTGGAGGAATTTGCGGATGAGC
GTGAGCATGTCGCCATCCAGCACGCGGCCCAGATCCAAGAGTTAAGCGAC
ATCGTCGCAGCCGTGGAG
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