mRNA_H-elongata_contig46969.11796.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig46969.11796.1
Unique NamemRNA_H-elongata_contig46969.11796.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig46969.11796.1 vs. uniprot
Match: A0A6H5JK08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK08_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 7.300e-43
Identity = 141/369 (38.21%), Postives = 167/369 (45.26%), Query Frame = 1 
Query:  115 IEHAAAKGNLDLVSTLLQAGAIANTPGPRGYRGRTVLDAAVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANVNSLDADRRGPLYLAVRAG-------------------------------HDQVVGSLLLGLVTSGVKDGVSAKDKRGDAPLHVAASRGYAGIACALMLRGADKDALDGXXXXXXXXXXXXXXXXXXXXXXXXXXX-------------------------------------------------------PTLRYGENELSVLDCSASNGHIGVMRALLRHGVVEVNDADSTGYTALHMAADNNAAEAVIALLKLGAEIESLDLHDWTPLHCAA 963
            +EHAAA GN +LV+ LL+AG    +PG RG RGRT+LDA   XXXXXXXXXXXXXXX                                   ANV SLDA +RGPL LAVR                                 H+ +V SLLLG          SAKDK+GDAPLH+AA RG AGIA AL+L+G DK+ALD                                                                                   P +R+GENELS LD + S+GHI V++AL  H  V+VN  D TGYTALHMAADNN + AV  L+  GA++ES D+H WTPLHCAA
Sbjct:   35 VEHAAANGNFELVTALLKAGGT-GSPGLRGCRGRTLLDAXXXXXXXXXXXXXXXXXXTPDRCARSASKRRSALHRAALHGHEAAARVLMMAGANVGSLDAVKRGPLALAVRRNVVESLSIRCDLDCSNLSSSPRETCCAHERGEHEHLVCSLLLGGACP------SAKDKKGDAPLHLAAWRGRAGIASALLLKGGDKNALDSLGRIFLWRCFRHKAGVGQLRRVLGRMQRTLHATRRVSHGVSRPPPPPCFRRFISAVRKSPLIVAAEHGARGTIDALLVAGADPDIRHGENELSALDSAVSHGHISVLKALAHHEGVDVNAVDPTGYTALHMAADNNQSSAVGVLIAAGADLESQDIHQWTPLHCAA 396
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BLAST of mRNA_H-elongata_contig46969.11796.1 vs. uniprot
Match: D7FT34_ECTSI (Ankyrin 2, neuronal isoform 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT34_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 2.220e-29
Identity = 108/286 (37.76%), Postives = 138/286 (48.25%), Query Frame = 1 
Query:   13 HPERNLLRSFSEKLFSLVADNATPKQWADWLRHPIEHAAAKGNLDLVSTLLQAGAIANTPGPRGYRGRTVLDAAVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANVNSLDADRRGPLYLAVRAGHDQVVGSLLLGLVTSGVKDGVSAKDKRGDAPLHVAAS-RGYAGIACALMLRGADKDALDGXXXXXXXXXXXXXXXXXXXXXXXXXXXPTLRYGENELSVLDCSASNGHIGVMRALLRHGVVEVNDADSTGYTALHMAAD 867
            +P+R  LR    +L ++V D+ATPKQWADW+R P+EHAAA+G  DLV+ LL+AG      G RG  GRT+LDAA +                                                  ANVN LD ++RG                      +       + KDK+GD+PLHVAA+                       XXXXXXXXXXXXXXX            P +R+GE+ELS LD + S+GH+GV+RAL+ HGV ++N  DSTGYTALH AAD
Sbjct:    2 YPKREALRESCRELVAVVIDDATPKQWADWVRIPVEHAAAQGKFDLVTALLKAGGT-GASGVRGRGGRTILDAAAKGGNGNVVSAILNAGAKPDLGIRSGKKKRGPLHHAALHGHEAATRVLMMAGANVNLLDGEKRGXXXXXXXXXXXXXXXXXXXXXASP------NGKDKKGDSPLHVAAAYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMVGPLLMAGANPGIRFGEHELSPLDSAVSDGHMGVLRALVLHGV-DINAGDSTGYTALHTAAD 279
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BLAST of mRNA_H-elongata_contig46969.11796.1 vs. uniprot
Match: D7FXM2_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXM2_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 6.580e-29
Identity = 135/284 (47.54%), Postives = 151/284 (53.17%), Query Frame = 1 
Query:  115 IEHAAAKGNLDLVSTLLQAGAIANTPGPRGYRGRTVLDAAVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANVNSLDADRRGPLYLAVRAGHDQVVGSLLLGLVTSGVKDGVSAKDKRGDAPLHVAASRGYAGIACALMLRGADKDALDGXXXXXXXXXXXXXXXXXXXXXXXXXXXPTLRYGENELSVLDCSASNGHIGVMRALLRHGVVEVNDADSTGYTALHMAADNNAAEAVIALLKLGAEIESLDLHDWTPLHCAAR 966
            IEHAAA GN +LV+ LL+AG    TPG RG RGRT+LDAA  XXXXXXXXXXXXXX                                    ANV SLDAD+RGPL L                                                                XXXXXXXXXXXXXXXXXXXXXXXXXXXP +RYGENE S LD +AS+GHI V++AL  H  V+VN  DSTGYTALHMAADNN + AV  L+  G ++ES D+H WTPLHCAAR
Sbjct:   17 IEHAAANGNFELVTALLKAGGT-GTPGLRGCRGRTLLDAAXXXXXXXXXXXXXXXXATPDLCARSGSKRRSALHRAALHGHEAAARVLMMAGANVGSLDADKRGPLALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDIRYGENEPSPLDSAASHGHISVLKALAHHEGVDVNAVDSTGYTALHMAADNNQSSAVGVLIAAGTDLESQDIHQWTPLHCAAR 293
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BLAST of mRNA_H-elongata_contig46969.11796.1 vs. uniprot
Match: A0A6H5K1F4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1F4_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 4.700e-23
Identity = 98/321 (30.53%), Postives = 137/321 (42.68%), Query Frame = 1 
Query:   13 HPERNLLRSFSEKLFSLVADNATPKQWADWLRHPIEHAAAKGNLDLVSTLLQAGAIANTPGPRGYRGRTVLDAAVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANVNSLD-ADRRGPLYLAVRAGHDQVVGSLLLGLVTSGVKDGVSAKDKRGDAPLHVAASRGYAGIACALMLRG-ADKDALDGXXXXXXXXXXXXXXXXXXXXXXXXXXXPTLRYGENE---LSVLDCSASNGHIGVMRALLRHGVVEVNDADSTGYTALHMAADNNAAEAVIALLKLGAEIESLD---LHDWTPL 951
            +P+R LL     ++F L+   ATP+QWA+WLR P+EHAAA+GNL LV  LL AGA     G RG RGRT+LDAA                                                    A+VN +D  D    L++AV   H  +V  LL+G          +++   G  PLH+AA+ G   +   L+     D DALD                              LR+       ++ +D + S GH+GV+ A++ +G   V   D+ G TALH A     A+AV  LL  GA++ +     LH +TPL
Sbjct:    4 YPKRALLEGAELEIFKLLYFGATPEQWAEWLRAPLEHAAARGNLGLVERLLNAGANGGA-GWRGCRGRTMLDAAALGGNPDVVATLLASGCASDVNVVSLSSRRSALHVASVCGHEAAAKKLIIAGADVNRVDPGDACVSLHVAVEGRHGDLVDLLLIGGACP------NSRTMSGRTPLHLAAASGNNRVVSTLLGNAMTDVDALDSRGVSPLMVASEGGHCSTVEALLRAGADMNLRHAGGAHLGMTAMDVAVSKGHVGVIEAIVENGG-NVRATDTYGLTALHHA---RGAQAVDVLLDAGADVNAKACPALHGFTPL 313
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BLAST of mRNA_H-elongata_contig46969.11796.1 vs. uniprot
Match: D7FXA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXA8_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 5.930e-22
Identity = 96/327 (29.36%), Postives = 135/327 (41.28%), Query Frame = 1 
Query:   49 KLFSLVADNATPKQWADWLRHPIEHAAAKGNLDLVSTLLQAGAIANTPGPRGYRGRTVLDAAVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANVNSLD-ADRRGPLYLAVRAGHDQVVGSLLLGLVTSGVKDGVSAKDKRGDA-PLHVAASRGYAGIACALM------------------LRGADKDALDGXXXXXXXXXXXXXXXXXXXXXXXXXXXPTLRYGENELSVLDCSASNGHIGVMRALLRHGV-VEVNDADSTGYTALHMAADNNAAEAVIALLKLGAEIESLDLHDWTPLHCAAR 966
            ++F +V++ ATP+QWA WLR P+EHAAA GNL+LV  LL+AG +    G RG RGR++LDAA                                                    A+VN +D AD+ GPL+ AV+AG D +VG+LL+    +G    V  +   G   PLH AA +G A  A  L+                    GAD D  D                              +  GE+  + L  +A     G +  LL  G  ++V  +   G T+LH AA+    EA++ALL+ GA +        T LH  + 
Sbjct:   14 EIFKIVSEGATPEQWARWLRAPLEHAAASGNLNLVDRLLKAG-VDGKAGWRGCRGRSLLDAAALGGNAGVMSALLQAGCGPDVNVVASSTGRSALYQSVLGKHEAAARKLILAGADVNFVDRADKAGPLFAAVKAGCDDLVGNLLM----AGANPNVIVRHSFGHGTPLHAAAKQGLANTASVLLSSPSTDKNGHVATVKVLLAAGADTDIRD--LDSHSALVFAAQYERIDVMKALLEHGVDVNVGEDHWNPLHWAAQFNSTGCITVLLDAGADIDVKCSFLDGRTSLHFAAETGNNEALLALLRRGANVHQTTDDGSTALHLVSE 333
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BLAST of mRNA_H-elongata_contig46969.11796.1 vs. uniprot
Match: A0A6H5KNQ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ1_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 6.450e-19
Identity = 93/319 (29.15%), Postives = 129/319 (40.44%), Query Frame = 1 
Query:   16 PERNLLRSFSEKLFSLVADNATPKQWADWLRHPIEHAAAKGNLDLVSTLLQAGAIANTPGPRGYRGRTVLDAAVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANVNSLDADRR-GPLYLAVRAGHDQVVGSLLLGLVTSGVKDGVSAKDKRGDAPLHVAASRGYAGIACALMLRGADKDALDGXXXXXXXXXXXXXXXXXXXXXXXXXXXPTLRYGENELSVLDCSASNGHIGVMRALLRHGVVEVNDADSTGYTALHMAA--DNNAAEAVIALLKLGAEIESLDLHDWTPLHCAA 963
            PER  L     ++F LV+  A+ +QWA+WLR P+EHAA++GN +LV  LLQAGA A   G RG RGRT+LDAA                                                    A+VN  D   +   L  A++  H Q+V  L +G     ++D              +A  RG+  I   L+  GAD                                  +LR    + S LD +A +  + ++ A+L  GV +V+  D  G TALH A    + A  AV  L++ GA  E  +   WTPLH AA
Sbjct:    5 PERTSLDGLGSEVFKLVSYGASREQWAEWLRVPLEHAASRGNPNLVERLLQAGADAGA-GWRGCRGRTLLDAAALGGNADVMSALIRGGAGADVNKVTVSSRRSALHTATCCGHEAAAKRLVLTGADVNFRDPVAKCSVLSQAIQGSHTQLVNDLPIGGARPNIRDDCGLGKTTYVTTFMLAVRRGHLAIVETLLEAGADC---------------------------------SLRQWA-DYSPLDVAAEHRALPILEAILGRGV-DVDAQDRAGCTALHTAVLFSDRAGPAVHMLIEAGANTELKNGGGWTPLHAAA 287
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BLAST of mRNA_H-elongata_contig46969.11796.1 vs. uniprot
Match: A0A6H5L2X2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2X2_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 4.560e-18
Identity = 78/188 (41.49%), Postives = 105/188 (55.85%), Query Frame = 1 
Query:   13 HPERNLLRSFSEKLFSLVADNATPKQWADWLRHPIEHAAAKGNLDLVSTLLQAGAIANTPGPRGYRGRTVLDAAVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA-----NVNSLDADRRGPLYLAVRAGHDQVVGSLLLGLVTSGVKDGVSAKDKRGDAPLHVAA 561
            +P+R +L+    +LF+LV++N+TP +W  WLR P+EHAAA+GN+DLVS LL+AGA  +  G  G  GRT+LDA   XXXXXXXXXXXXXX                                    A     +V S+++D R  L +A+ +GH  VVG+L    +  G KD V+A  +RG  PLH AA
Sbjct:    4 YPQRLVLQGVQSELFNLVSNNSTPCRWRQWLRVPLEHAAARGNIDLVSRLLKAGADGSA-GVTGCNGRTLLDAXXXXXXXXXXXXXXXXXCGPDAKMVSSSPKREGRLLLHLAVEYGHLDGTLAFLAAGVDTSVRSMESDSRSALDIAIESGHLAVVGAL----IHHGGKDDVNACSERGTIPLHRAA 186
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BLAST of mRNA_H-elongata_contig46969.11796.1 vs. uniprot
Match: D8LE08_ECTSI (Similar to ankyrin 2,3/unc44, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE08_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 3.910e-17
Identity = 76/196 (38.78%), Postives = 104/196 (53.06%), Query Frame = 1 
Query:   13 HPERNLLRSFSEKLFSLVADNATPKQWADWLRHPIEHAAAKGNLDLVSTLLQAGAIANTPGPRGYRGRTVLDAAVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANVNSLD-ADRRGPLYLAVRAGHDQVVGSLLLGLVTSGVKDGVSAKDKRGDAPLHVAASRGYAGIACALM 597
            +P+R LL     ++F L++  ATP+QWADWLR P+EHAAA+GN+ LV  LL+AGA     G RG RGRT+LDAA  XXXXXXXXXXXX                                      AN+  +D  D+  P ++A   GH  +VG+LL+G          +++ + G  PLHVAA+ G + +   L+
Sbjct:    4 YPKRALLEGAEVEIFKLLSFCATPEQWADWLRAPLEHAAARGNIGLVERLLEAGADGRA-GWRGCRGRTMLDAAXXXXXXXXXXXXXXSGCAPDVNVVSVSSKRSALHLAVVCGHEAAARTLMIAGANIRRVDPGDQCVPFHVAAEGGHGDLVGNLLIGGACP------NSRTRFGRTPLHVAAAVGNSRVVSTLL 192
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BLAST of mRNA_H-elongata_contig46969.11796.1 vs. uniprot
Match: A0A6H5JY41_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY41_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.860e-15
Identity = 81/289 (28.03%), Postives = 120/289 (41.52%), Query Frame = 1 
Query:   16 PERNLLRSFSEKLFSLVADNATPKQWADWLRHPIEHAAAKGNLDLVSTLLQAGAIANTPGPRGYRGRTVLDAAVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANVNSLD-ADRRGPLYLAVRAGHDQVVGSLLLGLVTSGVKDGVSAKDKRGDAPLHVAASRGYAGIACALML-RGADKDALDGXXXXXXXXXXXXXXXXXXXXXXXXXXXPTLRYGEN----ELSVLDCSASNGHIGVMRALLRHGVVEVNDADSTGYTALHMAA 864
            P+R LL     ++F L++  ATP++WA+WLR P EHAAA+GN+ LV  LL+AGA     G RG R RT+LDAA                                                    A+ + +D  +R  P ++A   GHD +V + L G          +++ + G  PLH+A   G      AL+       DALD                             T R  ++     ++ LD +A+ GH+ V++A+L +G  + +  D  G TALH AA
Sbjct:    5 PKRALLEEAELEIFKLLSFGATPERWAEWLRAPQEHAAARGNIGLVERLLEAGADGGA-GWRGCRSRTMLDAAALGGNADVVTKLLRSECVPDVNVVSVSSKRSALHLAVTWSHEAAARTLMIAGADNHRVDPVNRYTPFHVAAEGGHDDLVDNYLTGGACP------NSRSRVGRTPLHLADGLGNNRDVSALLGDANTHMDALDNDGFSPLMLASRNGHRSTVEVLLRAGADTTRRATDSGDFSHMAALDVAAAQGHVRVVKAILGNGG-DASAVDDHGCTALHYAA 285
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BLAST of mRNA_H-elongata_contig46969.11796.1 vs. uniprot
Match: D7FZ92_ECTSI (Pfs, NACHT and Ankyrin domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ92_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 5.920e-15
Identity = 120/339 (35.40%), Postives = 153/339 (45.13%), Query Frame = 1 
Query:    7 EHHPERNLLRSFSEKLFSLVADNATPKQWADWLRHPIEHAAAKGNLDLVSTLLQAGAIANTPGPRGY--RGRTVLDAAV---EXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANVNSLDADRRGPLYLAVRAGHDQVVGSLLLGLVTSGVKDGVSAKDKRGDAPLHVAASRGYAGIACA--LMLRGADKDALDGXXXXXXXXXXXXXXXXXXXXXXXXXXXPTLRYGENELSVLDCSASNGHIGVMRALLRHGVVEVNDADSTGYTALHMAA-------DNNAAEAVIALLKLGAEIE-SLDLHD----WTPLHCAAR 966
            E   +R+ +  F  ++F LV + AT KQW  WLR P+EHAAAKGNLDL + L+ AGA    PG +G+  R RT+L AA    +                                                   N+ ++D D   PL+LA  AGH +V+G LLL       K+  SA                     C   L++ GADKD  DG   XXXXXXXXXXXXXXXXXXXXXXXX                 S G+  +++A L     EV+  D  G+TALH AA       DN   +AV ALL+ GA++    D H     +TPLH A  
Sbjct:    5 EREEDRSRVDGFEIEIFKLVKEEATSKQWKQWLRTPLEHAAAKGNLDLFTRLIDAGA-GGEPGWQGWGHRERTLLGAAACGNKSDVMVQALLEAGETEFVNTSFGATRESALHVTVARGAEDASKALMMAGADPNLGNVDGD--SPLHLAAEAGHHRVIGILLLR------KEAQSADPMNLFLETXXXXXXXXXXXLCISELLMGGADKDVTDGKGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-SRGNAAMLKAFLDKDSREVDATDGRGWTALHYAAYVDRSVHDNG--DAVRALLEAGADVNVKTDAHASDDIFTPLHVAVN 331
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig46969.11796.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JK08_9PHAE7.300e-4338.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FT34_ECTSI2.220e-2937.76Ankyrin 2, neuronal isoform 4 n=1 Tax=Ectocarpus s... [more]
D7FXM2_ECTSI6.580e-2947.54Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5K1F4_9PHAE4.700e-2330.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXA8_ECTSI5.930e-2229.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KNQ1_9PHAE6.450e-1929.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L2X2_9PHAE4.560e-1841.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LE08_ECTSI3.910e-1738.78Similar to ankyrin 2,3/unc44, partial n=1 Tax=Ecto... [more]
A0A6H5JY41_9PHAE1.860e-1528.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZ92_ECTSI5.920e-1535.40Pfs, NACHT and Ankyrin domain protein n=1 Tax=Ecto... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig46969contigH-elongata_contig46969:616..4017 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.7
Seed ortholog evalue6e-28
Seed eggNOG ortholog2880.D7FT34
KEGG koko:K21440
GOsGO:0001508,GO:0002027,GO:0002262,GO:0002376,GO:0002520,GO:0003008,GO:0003012,GO:0003013,GO:0003015,GO:0003205,GO:0003230,GO:0003279,GO:0003283,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0005938,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006887,GO:0006888,GO:0006928,GO:0006936,GO:0006937,GO:0006941,GO:0006942,GO:0006996,GO:0007009,GO:0007010,GO:0007154,GO:0007163,GO:0007165,GO:0007267,GO:0007275,GO:0007507,GO:0008015,GO:0008016,GO:0008092,GO:0008093,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009893,GO:0009987,GO:0010256,GO:0010468,GO:0010522,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010880,GO:0010881,GO:0010882,GO:0010959,GO:0012505,GO:0014704,GO:0014731,GO:0015672,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016528,GO:0016529,GO:0018130,GO:0019222,GO:0019438,GO:0019722,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0019932,GO:0022898,GO:0023051,GO:0023052,GO:0030001,GO:0030003,GO:0030011,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030048,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030315,GO:0030424,GO:0030507,GO:0030673,GO:0030674,GO:0030863,GO:0031252,GO:0031253,GO:0031256,GO:0031430,GO:0031647,GO:0031672,GO:0031674,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032501,GO:0032502,GO:0032589,GO:0032879,GO:0032940,GO:0032970,GO:0033013,GO:0033014,GO:0033036,GO:0033043,GO:0033267,GO:0033292,GO:0033365,GO:0034101,GO:0034394,GO:0034613,GO:0034641,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035088,GO:0035090,GO:0035556,GO:0035637,GO:0036309,GO:0036371,GO:0042383,GO:0042391,GO:0042592,GO:0042692,GO:0042995,GO:0043005,GO:0043034,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043266,GO:0043268,GO:0043269,GO:0043270,GO:0043292,GO:0044057,GO:0044093,GO:0044237,GO:0044249,GO:0044271,GO:0044291,GO:0044304,GO:0044325,GO:0044422,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044449,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045197,GO:0045199,GO:0045202,GO:0045211,GO:0046483,GO:0046903,GO:0046907,GO:0048193,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048872,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051117,GO:0051128,GO:0051130,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051239,GO:0051270,GO:0051279,GO:0051282,GO:0051641,GO:0051649,GO:0051716,GO:0051899,GO:0051924,GO:0051928,GO:0055001,GO:0055065,GO:0055072,GO:0055074,GO:0055076,GO:0055080,GO:0055082,GO:0055117,GO:0060047,GO:0060048,GO:0060090,GO:0060255,GO:0060306,GO:0060307,GO:0060341,GO:0061024,GO:0061061,GO:0061245,GO:0061337,GO:0061515,GO:0065007,GO:0065008,GO:0065009,GO:0070252,GO:0070296,GO:0070727,GO:0070838,GO:0070972,GO:0071704,GO:0071840,GO:0071944,GO:0072359,GO:0072503,GO:0072507,GO:0072511,GO:0072657,GO:0072659,GO:0086001,GO:0086002,GO:0086003,GO:0086004,GO:0086005,GO:0086010,GO:0086012,GO:0086014,GO:0086015,GO:0086018,GO:0086019,GO:0086026,GO:0086046,GO:0086065,GO:0086066,GO:0086070,GO:0086091,GO:0090257,GO:0097060,GO:0097458,GO:0098590,GO:0098771,GO:0098794,GO:0098900,GO:0098901,GO:0098907,GO:0098910,GO:0099080,GO:0099081,GO:0099512,GO:0099568,GO:0099623,GO:0120025,GO:0120038,GO:1901016,GO:1901018,GO:1901019,GO:1901021,GO:1901360,GO:1901362,GO:1901379,GO:1901381,GO:1901564,GO:1901566,GO:1901576,GO:1903115,GO:1903169,GO:1903522,GO:1903779,GO:1904062,GO:1904064,GO:1904427,GO:1990778,GO:2001257,GO:2001259
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin-repeat protein similar to EsV-1-21
Ec32 orthologEc-04_002670.1
Exons4
Model size969
Cds size969
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig46969.11796.1prot_H-elongata_contig46969.11796.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig46969 616..4017 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930775.182865-CDS-H-elongata_contig46969:615..7291622930775.182865-CDS-H-elongata_contig46969:615..729Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46969 616..729 +
1691679564.7816722-CDS-H-elongata_contig46969:615..7291691679564.7816722-CDS-H-elongata_contig46969:615..729Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46969 616..729 +
1622930775.198651-CDS-H-elongata_contig46969:1799..19161622930775.198651-CDS-H-elongata_contig46969:1799..1916Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46969 1800..1916 +
1691679564.7947688-CDS-H-elongata_contig46969:1799..19161691679564.7947688-CDS-H-elongata_contig46969:1799..1916Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46969 1800..1916 +
1622930775.2150142-CDS-H-elongata_contig46969:2792..31941622930775.2150142-CDS-H-elongata_contig46969:2792..3194Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46969 2793..3194 +
1691679564.8061237-CDS-H-elongata_contig46969:2792..31941691679564.8061237-CDS-H-elongata_contig46969:2792..3194Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46969 2793..3194 +
1622930775.2275167-CDS-H-elongata_contig46969:3681..40171622930775.2275167-CDS-H-elongata_contig46969:3681..4017Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46969 3682..4017 +
1691679564.814822-CDS-H-elongata_contig46969:3681..40171691679564.814822-CDS-H-elongata_contig46969:3681..4017Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46969 3682..4017 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig46969.11796.1

>prot_H-elongata_contig46969.11796.1 ID=prot_H-elongata_contig46969.11796.1|Name=mRNA_H-elongata_contig46969.11796.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=323bp
MYEHHPERNLLRSFSEKLFSLVADNATPKQWADWLRHPIEHAAAKGNLDL
VSTLLQAGAIANTPGPRGYRGRTVLDAAVEGGNPEVVSALLRAGAKHDVN
MRSGSKRRSPLHRAAIGGHVAAALHLMMAGANVNSLDADRRGPLYLAVRA
GHDQVVGSLLLGLVTSGVKDGVSAKDKRGDAPLHVAASRGYAGIACALML
RGADKDALDGQGRTALHLAAESGHLSTVDALIDAGADPTLRYGENELSVL
DCSASNGHIGVMRALLRHGVVEVNDADSTGYTALHMAADNNAAEAVIALL
KLGAEIESLDLHDWTPLHCAAR*
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mRNA from alignment at H-elongata_contig46969:616..4017+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig46969.11796.1 ID=mRNA_H-elongata_contig46969.11796.1|Name=mRNA_H-elongata_contig46969.11796.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3402bp|location=Sequence derived from alignment at H-elongata_contig46969:616..4017+ (Himanthalia elongata Himel1 dioecious)
ATGTACGAGCACCACCCGGAACGCAACTTACTGCGATCTTTTTCGGAGAA
GCTCTTCAGCCTCGTCGCAGACAATGCCACTCCCAAGCAGTGGGCGGACT
GGCTGCGTCATCCGGTGAGCTACTCGTAACGTCGTATGGTGTATGTATAC
ATACACTATATTATGTACTTGTTGGCATATATGGTAAGTAGTCTAGTTCG
AGGTCGAGGTCGAGAGGGTCATCATGATGATACGTTATGTGCGTGCTGCT
GCAAAAAGGAAGCTAGCTCCCCCTGCTTTTTGTATTTCCTTTTTCTTTTT
TCCTGAAAATTCGGAACTCATTCAAATCCTTTGAACGTTTTTTTCCACCT
CAAGTAAGGAGAATACTTACTACGTCCCGGTAGTGCCTAAGACACAGGGG
AAAATTATTTTCCCTGTTCAGCTGACCACGAGCAGAAGGCAACCAAATCC
GGTTGACCTTCTGCTAAATGTGATGACGTCATGACCAACAACAACAACAA
CAACAACGCCGCACCAATCGGAACGTCCTGGATAGCCCCATTTCTCTAGG
CACGCGTGCGTGTGTGTGTGTGTGTGTGTGCGTGCGTGCAGACCATGCTG
CTCTCCGCGAGAGGTGGAATATTGAACACCATCAACCAACCGTAGTTATT
AATAGTTACTATATATATATACTACTACTACTACTACTGTGACGCGGTCT
TATTATAGCAGCAGTAGAACGGCAAGGATCGATTTGCATGGTGCTGCTTT
ATAACTCGACGTAGTAGTATGTCGGTCAACAAGAAAGTTCGGAGGAGTTA
AGCCATACTGCTGCTGCCGCAAGAAGTGTGCATGAAGTGTGTATGGGGTT
ACCACGCCCGCCTTTCCGATAGCATAATGCCAAGCATCATCAATCACCGT
TGATGGCGTGCTGCTGAAGAATCCACCCCTTCTTCATAACGCTTATTATT
GCGTCAATTAATACTACTGTTAATAGCTCTGTTAAGAGAGTACGCATTTT
TTTATGAATCGGAAGCTGCAACATGGTGTGCACCTCAAAGCCAAATTAGG
CTCCCTCTTTATCCTTAGCTTACCCGCATCGCAGTTAGTTGCCGTACGTA
GTACGTGGTGACGTTCTGCCCGACGCAACACAGAGTAAAACCGGGCAGTC
TTGCATGTTGCATGTACCTGTTGTTGTACCACAGATTGAACACGCGGCGG
CAAAGGGCAACCTCGATCTCGTCTCGACTTTGCTGCAAGCCGGCGCTATC
GCCAACACTCCCGGGCCAAGGGGATACCGGGGTCGAACTGTCCTTGACGC
GGTGTGTGATAAAACCCCCACCACAAAGTTCTATCCACCCAAACTATCTA
TTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTGTTTATTTTGCTTACT
TCGGCGTTGCATGCGATACGACGAAATCGGGGGCAGGGAGGGGAAGGAAG
CAAACGATTCCGGGAAGAGTATCGAGCGGGGTGGATAACCATCCCATCCC
ATCCGGAAATAGTAAGAATTTTCATTTCCCCCGTGCTCGTCGTACAGTAT
TTCGAAGGGCCACGTCAACTAAGCATTGAATGAGAGCGTATGTTTGTGTG
TGTGTGTCTATCTATCGAATTGCACGTAACCACGCAATCCGGCCCTGCCA
TGGCCCCTCCCGGGACTGTCCGCCCGATGGCATGTGCAATCAATTACATT
TGTAAGGGAGAGATGGGGGGAGAGAGAGAAGAGTCGCGTTTCGATGCGAA
CCTGTATTATATACTATTATAAACGGGGACACGGGAAAATTGCTTTCCCT
GTTCAGCTGACCACGAGCTGAAGGCAACCAAATACGGTTGACCTTCTGCT
AAATGTGTGGCCAACACACACACATTGATCCATCATATCCCACCGACCAT
GGGTGCAAACACTCCGAGCAACGTAGTAAAGAACAGAGAGAACGCCTCAC
TAGGGAAATATATCCCCTGCTTTGTGTAGGTTATAAAGTTGGGAAGTGCC
ACATTCCCCCTTCCCACTCAAGCAGTTCTTGGATATTAACGTTGTTTGTT
GAGCTCGATAATAACCAAGAGAATATAAATGGGGAGGCTCGGTAGTAGTA
GTGATTTGTGGGGCGTTACAAATCAAAGAGGCCCACTTTCCCAACTATCC
GTTGCAATGACTACTCTCCACCTCCAGGCTGTCGAAGGCGGTAACCCGGA
AGTGGTTTCCGCTTTACTCAGGGCCGGGGCGAAGCACGACGTGAACATGC
GGTCGGGATCTAAGAGAAGGTCACCGCTCCACCGGGCCGCGATCGGAGGC
CACGTTGCTGCCGCCCTCCACCTGATGATGGCGGGCGCGAACGTGAACTC
CCTGGACGCCGACAGGCGGGGTCCACTCTACCTCGCCGTCAGAGCGGGGC
ACGACCAGGTCGTGGGCTCTCTGCTTCTGGGCCTGGTGACCTCGGGTGTG
AAGGACGGTGTGAGCGCGAAGGACAAGAGGGGAGATGCTCCTCTGCACGT
CGCCGCCTCCCGTGGATACGCGGGGATAGCGTGCGCGCTGATGCTAAGGG
GCGCCGACAAAGATGCACTGGACGGTCAGGTTAGACAGACAGCCTTGGCA
GGGGCCGGGGAGGAGACGAAATTGCTTGTTTTCCCTGCCAAGATCGCCAG
GAAAACGCTGCTCGTAGTCGCAAAAAAAGTGTATCGAAACGTGTTCGCTA
TAGAAACCCTCTCCGTCATACTTTTTGAAAGTATACCATAAGTATTGGTG
CATGATACTGACGCCGGAAAATAAAGTTTTCGACGAAGCCCCGAGCTAGA
GCTTTATAAGAAGAACCTCATCGTGTCCGAACAAGTGATTATCTGCCCTT
CCTTCATCAGCGCCGAGTCGACAGAGTGGCCCACACAGTGGATCGGTAGC
TTACATTATATTGTCTCAGCAATGTTGTAGTACGAAACTGATATGACTGT
TATTATGTTTTAAGGATGAGAATTGTGAACCGAAGACGTAACTGGTAAGC
ACACGTGAAGACATGCGCACCTTCACGGGGATCGCCCTTTGTTTTCCCGT
CGCCGATTCTGGACAGGGGCGCACCGCGTTGCACCTGGCTGCCGAAAGCG
GCCACCTAAGCACAGTGGATGCCCTCATCGATGCCGGGGCTGATCCCACC
CTGCGCTACGGGGAGAACGAGCTCTCGGTTCTCGACTGCTCCGCATCGAA
CGGACACATCGGCGTCATGAGAGCCCTCCTCCGGCACGGCGTTGTGGAAG
TGAACGACGCGGACTCGACCGGTTACACCGCCTTGCATATGGCGGCGGAC
AACAACGCCGCGGAAGCGGTCATCGCTCTCCTCAAGTTGGGAGCCGAGAT
CGAATCACTCGATCTACACGACTGGACGCCGCTCCACTGCGCCGCAAGGT
AA
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Coding sequence (CDS) from alignment at H-elongata_contig46969:616..4017+

>mRNA_H-elongata_contig46969.11796.1 ID=mRNA_H-elongata_contig46969.11796.1|Name=mRNA_H-elongata_contig46969.11796.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1938bp|location=Sequence derived from alignment at H-elongata_contig46969:616..4017+ (Himanthalia elongata Himel1 dioecious)
ATGTACGAGCACCACCCGGAACGCAACTTACTGCGATCTTTTTCGGAGAA
GCTCTTCAGCCTCGTCGCAGACAATGCCACTCCCAAGCAGTGGGCGGACT
GGCTGCGTCATCCGATGTACGAGCACCACCCGGAACGCAACTTACTGCGA
TCTTTTTCGGAGAAGCTCTTCAGCCTCGTCGCAGACAATGCCACTCCCAA
GCAGTGGGCGGACTGGCTGCGTCATCCGATTGAACACGCGGCGGCAAAGG
GCAACCTCGATCTCGTCTCGACTTTGCTGCAAGCCGGCGCTATCGCCAAC
ACTCCCGGGCCAAGGGGATACCGGGGTCGAACTGTCCTTGACGCGATTGA
ACACGCGGCGGCAAAGGGCAACCTCGATCTCGTCTCGACTTTGCTGCAAG
CCGGCGCTATCGCCAACACTCCCGGGCCAAGGGGATACCGGGGTCGAACT
GTCCTTGACGCGGCTGTCGAAGGCGGTAACCCGGAAGTGGTTTCCGCTTT
ACTCAGGGCCGGGGCGAAGCACGACGTGAACATGCGGTCGGGATCTAAGA
GAAGGTCACCGCTCCACCGGGCCGCGATCGGAGGCCACGTTGCTGCCGCC
CTCCACCTGATGATGGCGGGCGCGAACGTGAACTCCCTGGACGCCGACAG
GCGGGGTCCACTCTACCTCGCCGTCAGAGCGGGGCACGACCAGGTCGTGG
GCTCTCTGCTTCTGGGCCTGGTGACCTCGGGTGTGAAGGACGGTGTGAGC
GCGAAGGACAAGAGGGGAGATGCTCCTCTGCACGTCGCCGCCTCCCGTGG
ATACGCGGGGATAGCGTGCGCGCTGATGCTAAGGGGCGCCGACAAAGATG
CACTGGACGGTCAGGCTGTCGAAGGCGGTAACCCGGAAGTGGTTTCCGCT
TTACTCAGGGCCGGGGCGAAGCACGACGTGAACATGCGGTCGGGATCTAA
GAGAAGGTCACCGCTCCACCGGGCCGCGATCGGAGGCCACGTTGCTGCCG
CCCTCCACCTGATGATGGCGGGCGCGAACGTGAACTCCCTGGACGCCGAC
AGGCGGGGTCCACTCTACCTCGCCGTCAGAGCGGGGCACGACCAGGTCGT
GGGCTCTCTGCTTCTGGGCCTGGTGACCTCGGGTGTGAAGGACGGTGTGA
GCGCGAAGGACAAGAGGGGAGATGCTCCTCTGCACGTCGCCGCCTCCCGT
GGATACGCGGGGATAGCGTGCGCGCTGATGCTAAGGGGCGCCGACAAAGA
TGCACTGGACGGTCAGGGGCGCACCGCGTTGCACCTGGCTGCCGAAAGCG
GCCACCTAAGCACAGTGGATGCCCTCATCGATGCCGGGGCTGATCCCACC
CTGCGCTACGGGGAGAACGAGCTCTCGGTTCTCGACTGCTCCGCATCGAA
CGGACACATCGGCGTCATGAGAGCCCTCCTCCGGCACGGCGTTGTGGAAG
TGAACGACGCGGACTCGACCGGTTACACCGCCTTGCATATGGCGGCGGAC
AACAACGCCGCGGAAGCGGTCATCGCTCTCCTCAAGTTGGGAGCCGAGAT
CGAATCACTCGATCTACACGACTGGACGCCGCTCCACTGCGCCGCAAGGT
AAGGGCGCACCGCGTTGCACCTGGCTGCCGAAAGCGGCCACCTAAGCACA
GTGGATGCCCTCATCGATGCCGGGGCTGATCCCACCCTGCGCTACGGGGA
GAACGAGCTCTCGGTTCTCGACTGCTCCGCATCGAACGGACACATCGGCG
TCATGAGAGCCCTCCTCCGGCACGGCGTTGTGGAAGTGAACGACGCGGAC
TCGACCGGTTACACCGCCTTGCATATGGCGGCGGACAACAACGCCGCGGA
AGCGGTCATCGCTCTCCTCAAGTTGGGAGCCGAGATCGAATCACTCGATC
TACACGACTGGACGCCGCTCCACTGCGCCGCAAGGTAA
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