mRNA_H-elongata_contig46956.11793.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig46956.11793.1
Unique NamemRNA_H-elongata_contig46956.11793.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig46956.11793.1 vs. uniprot
Match: A0A6H5JIV0_9PHAE (Thioredoxin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JIV0_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 1.800e-7
Identity = 28/37 (75.68%), Postives = 30/37 (81.08%), Query Frame = -1 
Query:  208 REIEEQFKNQINFVMVDGAAEKNYDLVRRVAPPDIPH 318
            REIEEQFKNQINFV+VDG+AEKNYDLV       IPH
Sbjct:  185 REIEEQFKNQINFVVVDGSAEKNYDLVDAFRVDGIPH 221
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig46956.11793.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JIV0_9PHAE1.800e-775.68Thioredoxin domain-containing protein n=2 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig46956contigH-elongata_contig46956:2..319 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size318
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930775.0324419-CDS-H-elongata_contig46956:1..3191622930775.0324419-CDS-H-elongata_contig46956:1..319Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46956 2..319 +
1691679564.7239044-CDS-H-elongata_contig46956:1..3191691679564.7239044-CDS-H-elongata_contig46956:1..319Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46956 2..319 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig46956.11793.1prot_H-elongata_contig46956.11793.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig46956 2..319 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig46956.11793.1

>prot_H-elongata_contig46956.11793.1 ID=prot_H-elongata_contig46956.11793.1|Name=mRNA_H-elongata_contig46956.11793.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
WENSLFSFKPSFPFLPSFLSRSRQISCDRFKAEAYAARRNEALLLMLVTR
GENGCRIGARFEISGVKMRMGYIGWRNTPYQVIVFFGSAIHHNEVYLVLE
LLFNFS
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mRNA from alignment at H-elongata_contig46956:2..319+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig46956.11793.1 ID=mRNA_H-elongata_contig46956.11793.1|Name=mRNA_H-elongata_contig46956.11793.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=318bp|location=Sequence derived from alignment at H-elongata_contig46956:2..319+ (Himanthalia elongata Himel1 dioecious)
TGGGAGAACTCTCTGTTCTCTTTCAAACCGAGCTTTCCCTTCCTTCCTTC
CTTCCTCTCGAGATCTCGACAAATTTCATGCGACCGGTTCAAAGCGGAAG
CCTACGCAGCCCGAAGGAACGAAGCGCTCTTATTGATGCTGGTAACACGA
GGGGAGAATGGATGCCGAATCGGCGCGCGCTTCGAGATATCTGGGGTGAA
AATGCGCATGGGGTATATCGGGTGGCGCAACACGCCTTACCAAGTCATAG
TTTTTTTCGGCAGCGCCATCCACCATAACGAAGTTTATTTGGTTCTTGAA
TTGCTCTTCAATTTCTCT
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Coding sequence (CDS) from alignment at H-elongata_contig46956:2..319+

>mRNA_H-elongata_contig46956.11793.1 ID=mRNA_H-elongata_contig46956.11793.1|Name=mRNA_H-elongata_contig46956.11793.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig46956:2..319+ (Himanthalia elongata Himel1 dioecious)
TGGGAGAACTCTCTGTTCTCTTTCAAACCGAGCTTTCCCTTCCTTCCTTC
CTTCCTCTCGAGATCTCGACAAATTTCATGCGACCGGTTCAAAGCGGAAG
CCTACGCAGCCCGAAGGAACGAAGCGCTCTTATTGATGCTGGTAACACGA
GGGGAGAATGGATGCCGAATCGGCGCGCGCTTCGAGATATCTGGGGTGAA
AATGCGCATGGGGTATATCGGGTGGCGCAACACGCCTTACCAAGTCATAG
TTTTTTTCGGCAGCGCCATCCACCATAACGAAGTTTATTTGGTTCTTGAA
TTGCTCTTCAATTTCTCTTGGGAGAACTCTCTGTTCTCTTTCAAACCGAG
CTTTCCCTTCCTTCCTTCCTTCCTCTCGAGATCTCGACAAATTTCATGCG
ACCGGTTCAAAGCGGAAGCCTACGCAGCCCGAAGGAACGAAGCGCTCTTA
TTGATGCTGGTAACACGAGGGGAGAATGGATGCCGAATCGGCGCGCGCTT
CGAGATATCTGGGGTGAAAATGCGCATGGGGTATATCGGGTGGCGCAACA
CGCCTTACCAAGTCATAGTTTTTTTCGGCAGCGCCATCCACCATAACGAA
GTTTATTTGGTTCTTGAATTGCTCTTCAATTTCTCT
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