mRNA_H-elongata_contig46916.11789.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig46916.11789.1
Unique NamemRNA_H-elongata_contig46916.11789.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig46916.11789.1 vs. uniprot
Match: A0A6H5K0C3_9PHAE (AMP-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0C3_9PHAE)

HSP 1 Score: 179 bits (453), Expect = 2.180e-50
Identity = 88/135 (65.19%), Postives = 106/135 (78.52%), Query Frame = 1
Query:    1 TTEVARVVCGFPGIADVNVYGVEVPGAEGRVGMAAVKFKQAVRVNEFDWQKLYLYIDKNLPPYAQPHFLRVADRSGLTSHMTTTFKQIKTQLRREGFDPARVNEDTLLFRDGVAKTFVPLTRHLYEAICSASVRL 405
            TTEVA V+CGFPGIADVNVYGVEVPG EGR GMAAV  K++ + +E D +  + ++D++LP +AQP FLRVA  S  TS MT TFK+IKTQLR+EGFDPA V  + LL RDGV +TFVPL+RHLYEAI   S+RL
Sbjct:  513 TTEVAHVICGFPGIADVNVYGVEVPGTEGRAGMAAVALKESSQADELDCKSFFQHLDRHLPSFAQPQFLRVAAISSSTSQMTPTFKRIKTQLRKEGFDPANVEGEALLLRDGVDRTFVPLSRHLYEAISDGSLRL 647          
BLAST of mRNA_H-elongata_contig46916.11789.1 vs. uniprot
Match: A0A8D2J1D3_VARKO (Solute carrier family 27 member 3 n=1 Tax=Varanus komodoensis TaxID=61221 RepID=A0A8D2J1D3_VARKO)

HSP 1 Score: 113 bits (283), Expect = 1.630e-27
Identity = 62/135 (45.93%), Postives = 84/135 (62.22%), Query Frame = 1
Query:    1 TTEVARVVCGFPGIADVNVYGVEVPGAEGRVGMAAVKFKQAVRVNEFDWQKLYLYIDKNLPPYAQPHFLRVADRSGLTSHMTTTFKQIKTQLRREGFDPARVNEDTLLFRDGVAKTFVPLTRHLYEAICSASVRL 405
            T EV+ V+    G+ DV VYGV VPG EGR GMA +  +      EFD  ++Y ++ + LPPY++P FLR+ DR  LT     TFKQ K +L  EGFDP ++  D L F D  A+T+VPLT H++E I +  +RL
Sbjct:  233 TMEVSEVLGSLEGLQDVTVYGVTVPGHEGRAGMATMVLQPGW---EFDGAQVYTHVAELLPPYSRPRFLRIQDRLELTE----TFKQKKVRLAAEGFDPTQIT-DPLFFLDAAAETYVPLTHHIWEGIAAGDIRL 359          
BLAST of mRNA_H-elongata_contig46916.11789.1 vs. uniprot
Match: UPI001B349EEF (very long-chain acyl-CoA synthetase isoform X1 n=4 Tax=Ochotona TaxID=9977 RepID=UPI001B349EEF)

HSP 1 Score: 114 bits (285), Expect = 6.760e-27
Identity = 65/135 (48.15%), Postives = 90/135 (66.67%), Query Frame = 1
Query:    1 TTEVARVVCGFPGIADVNVYGVEVPGAEGRVGMAAVKFKQAVRVNEFDWQKLYLYIDKNLPPYAQPHFLRVADRSGLTSHMTTTFKQIKTQLRREGFDPARVNEDTLLFRDGVAKTFVPLTRHLYEAICSASVRL 405
            TTEVA +V   P I +VNVYGV VPG EGR+GMA++K K+    +EFD +KL+ ++   LP YA+P FLR+ D    T  +T TFK  K  L  EGF+PA +  DTL F D  AK +VP+T+ +Y+AI + +++L
Sbjct:  494 TTEVADIVGLVPFIQEVNVYGVPVPGHEGRIGMASIKIKEN---HEFDGKKLFQHVVDYLPNYARPRFLRIQD----TIEITGTFKHRKVTLMEEGFNPAVIT-DTLYFLDEAAKMYVPMTQDIYDAISNKTLKL 620          
BLAST of mRNA_H-elongata_contig46916.11789.1 vs. uniprot
Match: A0A8D2IYC9_VARKO (Solute carrier family 27 member 3 n=1 Tax=Varanus komodoensis TaxID=61221 RepID=A0A8D2IYC9_VARKO)

HSP 1 Score: 113 bits (283), Expect = 1.160e-26
Identity = 62/135 (45.93%), Postives = 84/135 (62.22%), Query Frame = 1
Query:    1 TTEVARVVCGFPGIADVNVYGVEVPGAEGRVGMAAVKFKQAVRVNEFDWQKLYLYIDKNLPPYAQPHFLRVADRSGLTSHMTTTFKQIKTQLRREGFDPARVNEDTLLFRDGVAKTFVPLTRHLYEAICSASVRL 405
            T EV+ V+    G+ DV VYGV VPG EGR GMA +  +      EFD  ++Y ++ + LPPY++P FLR+ DR  LT     TFKQ K +L  EGFDP ++  D L F D  A+T+VPLT H++E I +  +RL
Sbjct:  459 TMEVSEVLGSLEGLQDVTVYGVTVPGHEGRAGMATMVLQPGW---EFDGAQVYTHVAELLPPYSRPRFLRIQDRLELTE----TFKQKKVRLAAEGFDPTQIT-DPLFFLDAAAETYVPLTHHIWEGIAAGDIRL 585          
BLAST of mRNA_H-elongata_contig46916.11789.1 vs. uniprot
Match: UPI0009CE87F4 (long-chain-acyl-CoA synthetase n=1 Tax=Mycobacteroides abscessus TaxID=36809 RepID=UPI0009CE87F4)

HSP 1 Score: 113 bits (283), Expect = 1.180e-26
Identity = 68/134 (50.75%), Postives = 83/134 (61.94%), Query Frame = 1
Query:    1 TTEVARVVCGFPGIADVNVYGVEVPGAEGRVGMAAVKFKQAVRVNEFDWQKLYLYIDKNLPPYAQPHFLRVADRSGLTSHMTTTFKQIKTQLRREGFDPARVNEDTLLFRDGVAKTFVPLTRHLYEAICSASVR 402
            TTEVA V+    GI DVNVYGV VPGAEGR GMAAV  ++       D   LY   +++L PYA+P FLR+     +T     TFKQ K  L ++GFDPA V  D L FRD  A T+VPLT  LY+ ICS ++R
Sbjct:  465 TTEVAEVISVLSGIEDVNVYGVAVPGAEGRAGMAAVVPRKG---EPLDLDALYKATERDLAPYARPLFLRIQQEMDVTG----TFKQRKVHLVQQGFDPALVGAD-LYFRDTRAGTYVPLTGPLYDGICSGAIR 590          
BLAST of mRNA_H-elongata_contig46916.11789.1 vs. uniprot
Match: A0A3Q7V560_URSAR (very long-chain acyl-CoA synthetase-like n=1 Tax=Ursus arctos horribilis TaxID=116960 RepID=A0A3Q7V560_URSAR)

HSP 1 Score: 106 bits (265), Expect = 1.530e-26
Identity = 63/135 (46.67%), Postives = 86/135 (63.70%), Query Frame = 1
Query:    1 TTEVARVVCGFPGIADVNVYGVEVPGAEGRVGMAAVKFKQAVRVNEFDWQKLYLYIDKNLPPYAQPHFLRVADRSGLTSHMTTTFKQIKTQLRREGFDPARVNEDTLLFRDGVAKTFVPLTRHLYEAICSASVRL 405
            TTEVA  V     + +VNVYGV VPG EGR+GMAA+K K+    +EFD +KL+ ++   LP YA+P FLR+ D    T  +T TFK  K  L  EGF+PA V +D L F D  A+ +VP+T  +Y AI + +++L
Sbjct:   47 TTEVADTVGLVDFVQEVNVYGVSVPGHEGRIGMAAIKMKEN---HEFDGKKLFTHVADYLPTYARPRFLRIQD----TIEITGTFKHRKVTLVEEGFNPA-VIKDALYFLDDKAEMYVPMTEDIYNAINNKALKL 173          
BLAST of mRNA_H-elongata_contig46916.11789.1 vs. uniprot
Match: A0A3B4BTN6_PYGNA (Very long-chain acyl-CoA synthetase-like n=2 Tax=Serrasalmidae TaxID=42495 RepID=A0A3B4BTN6_PYGNA)

HSP 1 Score: 113 bits (282), Expect = 1.740e-26
Identity = 64/135 (47.41%), Postives = 86/135 (63.70%), Query Frame = 1
Query:    1 TTEVARVVCGFPGIADVNVYGVEVPGAEGRVGMAAVKFKQAVRVNEFDWQKLYLYIDKNLPPYAQPHFLRVADRSGLTSHMTTTFKQIKTQLRREGFDPARVNEDTLLFRDGVAKTFVPLTRHLYEAICSASVRL 405
            TTEV+ ++     I + N+YGV+VPG EGRVGMAAV  K+     EFD  K++ +I K+LP YAQP FLR+      T  +T TFKQ+K +L  EGFDPA ++E  L F     + ++PLT  LY +I + SVRL
Sbjct:  494 TTEVSDIISQLDFIKEGNIYGVQVPGQEGRVGMAAVTIKEGA---EFDGTKMFNHITKHLPSYAQPRFLRIQS----TVEVTGTFKQVKKKLVEEGFDPAGISEP-LYFLSAQERRYIPLTEPLYTSIATGSVRL 620          
BLAST of mRNA_H-elongata_contig46916.11789.1 vs. uniprot
Match: A0A1A8U718_NOTFU (Uncharacterized protein (Fragment) n=2 Tax=Nothobranchius TaxID=28779 RepID=A0A1A8U718_NOTFU)

HSP 1 Score: 108 bits (269), Expect = 2.030e-26
Identity = 60/135 (44.44%), Postives = 85/135 (62.96%), Query Frame = 1
Query:    1 TTEVARVVCGFPGIADVNVYGVEVPGAEGRVGMAAVKFKQAVRVNEFDWQKLYLYIDKNLPPYAQPHFLRVADRSGLTSHMTTTFKQIKTQLRREGFDPARVNEDTLLFRDGVAKTFVPLTRHLYEAICSASVRL 405
            TTEV+ ++     + + NVYGV+VPG EGRVGMAAV  K+     EFD  K+Y ++   LP YA+P F+R+         +T TFKQ+K +L  +GFDP +V +D L F D   K++VP+T  LY +I S S++L
Sbjct:  115 TTEVSDILSFIDCLQEANVYGVQVPGHEGRVGMAAVSLKED---GEFDGSKVYKHVVSYLPSYARPRFIRIQS----AVEVTGTFKQMKVKLVAQGFDPGQV-QDPLYFLDDCVKSYVPVTAQLYSSILSGSIKL 241          
BLAST of mRNA_H-elongata_contig46916.11789.1 vs. uniprot
Match: A0A3L7HEI3_CRIGR (SLC27A2 n=2 Tax=Cricetulus griseus TaxID=10029 RepID=A0A3L7HEI3_CRIGR)

HSP 1 Score: 111 bits (277), Expect = 4.460e-26
Identity = 64/135 (47.41%), Postives = 88/135 (65.19%), Query Frame = 1
Query:    1 TTEVARVVCGFPGIADVNVYGVEVPGAEGRVGMAAVKFKQAVRVNEFDWQKLYLYIDKNLPPYAQPHFLRVADRSGLTSHMTTTFKQIKTQLRREGFDPARVNEDTLLFRDGVAKTFVPLTRHLYEAICSASVRL 405
            TTEVA +V     + +VNVYGV VPG EGR+GMA++K K+    +EF+ +KL+ +I + LP YA+P FLR+ D    T  +T TFK  K  L  EGF+P  V +D L F D  AKT+VP+T  +Y AI + S++L
Sbjct:  350 TTEVADIVGLVDFVEEVNVYGVPVPGHEGRIGMASIKMKEN---SEFNGKKLFQHISEYLPNYARPRFLRIQD----TIEITGTFKHRKVTLMEEGFNPT-VIKDALYFMDETAKTYVPMTEDIYNAISNKSLKL 476          
BLAST of mRNA_H-elongata_contig46916.11789.1 vs. uniprot
Match: A0A8C8U7P1_PERMB (Solute carrier family 27 (fatty acid transporter), member 2 n=1 Tax=Peromyscus maniculatus bairdii TaxID=230844 RepID=A0A8C8U7P1_PERMB)

HSP 1 Score: 111 bits (277), Expect = 4.770e-26
Identity = 63/135 (46.67%), Postives = 87/135 (64.44%), Query Frame = 1
Query:    1 TTEVARVVCGFPGIADVNVYGVEVPGAEGRVGMAAVKFKQAVRVNEFDWQKLYLYIDKNLPPYAQPHFLRVADRSGLTSHMTTTFKQIKTQLRREGFDPARVNEDTLLFRDGVAKTFVPLTRHLYEAICSASVRL 405
            TTEVA +V     + +VNVYGV VPG EGR+GMA++K K+    +EF+ +KL+ +I + LP YA+P FLR+ D    T  +T TFK  K  L  EGF+P  V +D L F D  AKT+VP+T  +Y AI   +++L
Sbjct:  359 TTEVADIVGLVDFVQEVNVYGVPVPGHEGRIGMASIKIKEN---HEFNGKKLFQHISEYLPSYARPRFLRIQD----TIEITGTFKHRKVTLMEEGFNPT-VIKDALYFMDDTAKTYVPMTEDIYNAISDKTIKL 485          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig46916.11789.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K0C3_9PHAE2.180e-5065.19AMP-binding domain-containing protein n=2 Tax=Ecto... [more]
A0A8D2J1D3_VARKO1.630e-2745.93Solute carrier family 27 member 3 n=1 Tax=Varanus ... [more]
UPI001B349EEF6.760e-2748.15very long-chain acyl-CoA synthetase isoform X1 n=4... [more]
A0A8D2IYC9_VARKO1.160e-2645.93Solute carrier family 27 member 3 n=1 Tax=Varanus ... [more]
UPI0009CE87F41.180e-2650.75long-chain-acyl-CoA synthetase n=1 Tax=Mycobactero... [more]
A0A3Q7V560_URSAR1.530e-2646.67very long-chain acyl-CoA synthetase-like n=1 Tax=U... [more]
A0A3B4BTN6_PYGNA1.740e-2647.41Very long-chain acyl-CoA synthetase-like n=2 Tax=S... [more]
A0A1A8U718_NOTFU2.030e-2644.44Uncharacterized protein (Fragment) n=2 Tax=Nothobr... [more]
A0A3L7HEI3_CRIGR4.460e-2647.41SLC27A2 n=2 Tax=Cricetulus griseus TaxID=10029 Rep... [more]
A0A8C8U7P1_PERMB4.770e-2646.67Solute carrier family 27 (fatty acid transporter),... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig46916contigH-elongata_contig46916:2..1124 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score187.2
Seed ortholog evalue5.1e-45
Seed eggNOG ortholog2880.D7FYL9
KEGG koko:K08745
KEGG TC4.C.1.1.1,4.C.1.1.9
KEGG Pathwayko03320,ko04931,map03320,map04931
EggNOG free text desc.very long-chain fatty acid-CoA ligase activity
EggNOG OGsKOG1179@1,KOG1179@2759
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01004,ko02000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionacyl-CoA synthetase
Ec32 orthologEc-26_002720.1
Exons3
Model size408
Cds size408
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig46916.11789.1prot_H-elongata_contig46916.11789.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig46916 2..1124 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930774.583017-CDS-H-elongata_contig46916:1..1511622930774.583017-CDS-H-elongata_contig46916:1..151Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46916 2..151 +
1691679564.505716-CDS-H-elongata_contig46916:1..1511691679564.505716-CDS-H-elongata_contig46916:1..151Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46916 2..151 +
1622930774.5954814-CDS-H-elongata_contig46916:423..5551622930774.5954814-CDS-H-elongata_contig46916:423..555Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46916 424..555 +
1691679564.5164483-CDS-H-elongata_contig46916:423..5551691679564.5164483-CDS-H-elongata_contig46916:423..555Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46916 424..555 +
1622930774.6071455-CDS-H-elongata_contig46916:998..11241622930774.6071455-CDS-H-elongata_contig46916:998..1124Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46916 999..1124 +
1691679564.5265331-CDS-H-elongata_contig46916:998..11241691679564.5265331-CDS-H-elongata_contig46916:998..1124Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46916 999..1124 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig46916.11789.1

>prot_H-elongata_contig46916.11789.1 ID=prot_H-elongata_contig46916.11789.1|Name=mRNA_H-elongata_contig46916.11789.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=136bp
TTEVARVVCGFPGIADVNVYGVEVPGAEGRVGMAAVKFKQAVRVNEFDWQ
KLYLYIDKNLPPYAQPHFLRVADRSGLTSHMTTTFKQIKTQLRREGFDPA
RVNEDTLLFRDGVAKTFVPLTRHLYEAICSASVRL*
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mRNA from alignment at H-elongata_contig46916:2..1124+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig46916.11789.1 ID=mRNA_H-elongata_contig46916.11789.1|Name=mRNA_H-elongata_contig46916.11789.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1123bp|location=Sequence derived from alignment at H-elongata_contig46916:2..1124+ (Himanthalia elongata Himel1 dioecious)
ACCACCGAGGTCGCCCGAGTAGTTTGCGGATTTCCTGGAATAGCAGACGT GAACGTGTACGGTGTTGAGGTGCCGGGAGCAGAGGGTCGGGTCGGCATGG CGGCCGTCAAATTTAAGCAAGCCGTCCGCGTCAACGAATTTGACTGGCAG GTGGGCAGCTTAAAAATAGGTCAAACATCCTGCGGCATTTAATCCCTACC CCCGCGCGGGAGGCTCCACGGAGACCCGAACGATGCTCGTTCGCAGAGTC GCGCAACCACTCACAAGTTGCCACGGTGTACTATTATTAGTACTCCTTTT CATATGCTGTGCACCAGGTTTCGATACGCGACGCGAACCATTAGGTACTC GTTTACAATGCCAAGTGACACGGTTTCTTTCCTCACCTCCCACCCTTGTC GCCAACGTGACGACCCTTGCAGAAGTTGTACCTGTATATCGACAAGAACC TGCCGCCCTATGCACAGCCGCACTTTTTGCGCGTGGCCGATCGATCGGGC TTGACTTCGCATATGACAACGACTTTCAAGCAGATCAAGACGCAGTTGCG GAGGGTAAGACGGCAACTCTGTCTTGTCTCTTGGGCAGCAGCAAGCAACG GTGACGTGGTGACCGCTTCTGGGCGGGCTTTCAGACCCCTTCCTTGTAAG GTTGAATGATTTCCTCGATTTAGTCGCCATTTTCCGACCTCTAACGAAAA TGACTAAAAATCTTCCCTTTTCCATAAATAAAATTTCTGTAGAAATCTGC ACTCAAATGAAATCCTCCGAACGTCTAGACCATGTCCTGCATGCTTCATT ACACCGCGAATGGTAAAGTCAAGGGGAGGGGAGGGGACTATGACCAAATA TCGTCAGGTTCGAGTCGAGTGGGTGCACTCTTAACTGTCAGCAGAAAAAC ACTCGTGATGTAACTGAGATATATCTTGGCAACATCATAATATCTCTGTT GTTTTTCCATCCTTTTTTCCCCTAACGTTTGCAACGCTGTCGGTTAGGAG GGATTCGACCCCGCCAGGGTAAACGAAGACACGTTGTTGTTTCGCGACGG CGTTGCGAAGACGTTCGTGCCATTAACGAGGCACTTGTACGAGGCGATCT GCAGCGCATCAGTGCGCTTGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig46916:2..1124+

>mRNA_H-elongata_contig46916.11789.1 ID=mRNA_H-elongata_contig46916.11789.1|Name=mRNA_H-elongata_contig46916.11789.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=816bp|location=Sequence derived from alignment at H-elongata_contig46916:2..1124+ (Himanthalia elongata Himel1 dioecious)
ACCACCGAGGTCGCCCGAGTAGTTTGCGGATTTCCTGGAATAGCAGACGT
GAACGTGTACGGTGTTGAGGTGCCGGGAGCAGAGGGTCGGGTCGGCATGG
CGGCCGTCAAATTTAAGCAAGCCGTCCGCGTCAACGAATTTGACTGGCAG
ACCACCGAGGTCGCCCGAGTAGTTTGCGGATTTCCTGGAATAGCAGACGT
GAACGTGTACGGTGTTGAGGTGCCGGGAGCAGAGGGTCGGGTCGGCATGG
CGGCCGTCAAATTTAAGCAAGCCGTCCGCGTCAACGAATTTGACTGGCAG
AAGTTGTACCTGTATATCGACAAGAACCTGCCGCCCTATGCACAGCCGCA
CTTTTTGCGCGTGGCCGATCGATCGGGCTTGACTTCGCATATGACAACGA
CTTTCAAGCAGATCAAGACGCAGTTGCGGAGGAAGTTGTACCTGTATATC
GACAAGAACCTGCCGCCCTATGCACAGCCGCACTTTTTGCGCGTGGCCGA
TCGATCGGGCTTGACTTCGCATATGACAACGACTTTCAAGCAGATCAAGA
CGCAGTTGCGGAGGGAGGGATTCGACCCCGCCAGGGTAAACGAAGACACG
TTGTTGTTTCGCGACGGCGTTGCGAAGACGTTCGTGCCATTAACGAGGCA
CTTGTACGAGGCGATCTGCAGCGCATCAGTGCGCTTGTAGGAGGGATTCG
ACCCCGCCAGGGTAAACGAAGACACGTTGTTGTTTCGCGACGGCGTTGCG
AAGACGTTCGTGCCATTAACGAGGCACTTGTACGAGGCGATCTGCAGCGC
ATCAGTGCGCTTGTAG
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