mRNA_H-elongata_contig46916.11789.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig46916.11789.1 vs. uniprot
Match: A0A6H5K0C3_9PHAE (AMP-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0C3_9PHAE) HSP 1 Score: 179 bits (453), Expect = 2.180e-50 Identity = 88/135 (65.19%), Postives = 106/135 (78.52%), Query Frame = 1
Query: 1 TTEVARVVCGFPGIADVNVYGVEVPGAEGRVGMAAVKFKQAVRVNEFDWQKLYLYIDKNLPPYAQPHFLRVADRSGLTSHMTTTFKQIKTQLRREGFDPARVNEDTLLFRDGVAKTFVPLTRHLYEAICSASVRL 405
TTEVA V+CGFPGIADVNVYGVEVPG EGR GMAAV K++ + +E D + + ++D++LP +AQP FLRVA S TS MT TFK+IKTQLR+EGFDPA V + LL RDGV +TFVPL+RHLYEAI S+RL
Sbjct: 513 TTEVAHVICGFPGIADVNVYGVEVPGTEGRAGMAAVALKESSQADELDCKSFFQHLDRHLPSFAQPQFLRVAAISSSTSQMTPTFKRIKTQLRKEGFDPANVEGEALLLRDGVDRTFVPLSRHLYEAISDGSLRL 647
BLAST of mRNA_H-elongata_contig46916.11789.1 vs. uniprot
Match: A0A8D2J1D3_VARKO (Solute carrier family 27 member 3 n=1 Tax=Varanus komodoensis TaxID=61221 RepID=A0A8D2J1D3_VARKO) HSP 1 Score: 113 bits (283), Expect = 1.630e-27 Identity = 62/135 (45.93%), Postives = 84/135 (62.22%), Query Frame = 1
Query: 1 TTEVARVVCGFPGIADVNVYGVEVPGAEGRVGMAAVKFKQAVRVNEFDWQKLYLYIDKNLPPYAQPHFLRVADRSGLTSHMTTTFKQIKTQLRREGFDPARVNEDTLLFRDGVAKTFVPLTRHLYEAICSASVRL 405
T EV+ V+ G+ DV VYGV VPG EGR GMA + + EFD ++Y ++ + LPPY++P FLR+ DR LT TFKQ K +L EGFDP ++ D L F D A+T+VPLT H++E I + +RL
Sbjct: 233 TMEVSEVLGSLEGLQDVTVYGVTVPGHEGRAGMATMVLQPGW---EFDGAQVYTHVAELLPPYSRPRFLRIQDRLELTE----TFKQKKVRLAAEGFDPTQIT-DPLFFLDAAAETYVPLTHHIWEGIAAGDIRL 359
BLAST of mRNA_H-elongata_contig46916.11789.1 vs. uniprot
Match: UPI001B349EEF (very long-chain acyl-CoA synthetase isoform X1 n=4 Tax=Ochotona TaxID=9977 RepID=UPI001B349EEF) HSP 1 Score: 114 bits (285), Expect = 6.760e-27 Identity = 65/135 (48.15%), Postives = 90/135 (66.67%), Query Frame = 1
Query: 1 TTEVARVVCGFPGIADVNVYGVEVPGAEGRVGMAAVKFKQAVRVNEFDWQKLYLYIDKNLPPYAQPHFLRVADRSGLTSHMTTTFKQIKTQLRREGFDPARVNEDTLLFRDGVAKTFVPLTRHLYEAICSASVRL 405
TTEVA +V P I +VNVYGV VPG EGR+GMA++K K+ +EFD +KL+ ++ LP YA+P FLR+ D T +T TFK K L EGF+PA + DTL F D AK +VP+T+ +Y+AI + +++L
Sbjct: 494 TTEVADIVGLVPFIQEVNVYGVPVPGHEGRIGMASIKIKEN---HEFDGKKLFQHVVDYLPNYARPRFLRIQD----TIEITGTFKHRKVTLMEEGFNPAVIT-DTLYFLDEAAKMYVPMTQDIYDAISNKTLKL 620
BLAST of mRNA_H-elongata_contig46916.11789.1 vs. uniprot
Match: A0A8D2IYC9_VARKO (Solute carrier family 27 member 3 n=1 Tax=Varanus komodoensis TaxID=61221 RepID=A0A8D2IYC9_VARKO) HSP 1 Score: 113 bits (283), Expect = 1.160e-26 Identity = 62/135 (45.93%), Postives = 84/135 (62.22%), Query Frame = 1
Query: 1 TTEVARVVCGFPGIADVNVYGVEVPGAEGRVGMAAVKFKQAVRVNEFDWQKLYLYIDKNLPPYAQPHFLRVADRSGLTSHMTTTFKQIKTQLRREGFDPARVNEDTLLFRDGVAKTFVPLTRHLYEAICSASVRL 405
T EV+ V+ G+ DV VYGV VPG EGR GMA + + EFD ++Y ++ + LPPY++P FLR+ DR LT TFKQ K +L EGFDP ++ D L F D A+T+VPLT H++E I + +RL
Sbjct: 459 TMEVSEVLGSLEGLQDVTVYGVTVPGHEGRAGMATMVLQPGW---EFDGAQVYTHVAELLPPYSRPRFLRIQDRLELTE----TFKQKKVRLAAEGFDPTQIT-DPLFFLDAAAETYVPLTHHIWEGIAAGDIRL 585
BLAST of mRNA_H-elongata_contig46916.11789.1 vs. uniprot
Match: UPI0009CE87F4 (long-chain-acyl-CoA synthetase n=1 Tax=Mycobacteroides abscessus TaxID=36809 RepID=UPI0009CE87F4) HSP 1 Score: 113 bits (283), Expect = 1.180e-26 Identity = 68/134 (50.75%), Postives = 83/134 (61.94%), Query Frame = 1
Query: 1 TTEVARVVCGFPGIADVNVYGVEVPGAEGRVGMAAVKFKQAVRVNEFDWQKLYLYIDKNLPPYAQPHFLRVADRSGLTSHMTTTFKQIKTQLRREGFDPARVNEDTLLFRDGVAKTFVPLTRHLYEAICSASVR 402
TTEVA V+ GI DVNVYGV VPGAEGR GMAAV ++ D LY +++L PYA+P FLR+ +T TFKQ K L ++GFDPA V D L FRD A T+VPLT LY+ ICS ++R
Sbjct: 465 TTEVAEVISVLSGIEDVNVYGVAVPGAEGRAGMAAVVPRKG---EPLDLDALYKATERDLAPYARPLFLRIQQEMDVTG----TFKQRKVHLVQQGFDPALVGAD-LYFRDTRAGTYVPLTGPLYDGICSGAIR 590
BLAST of mRNA_H-elongata_contig46916.11789.1 vs. uniprot
Match: A0A3Q7V560_URSAR (very long-chain acyl-CoA synthetase-like n=1 Tax=Ursus arctos horribilis TaxID=116960 RepID=A0A3Q7V560_URSAR) HSP 1 Score: 106 bits (265), Expect = 1.530e-26 Identity = 63/135 (46.67%), Postives = 86/135 (63.70%), Query Frame = 1
Query: 1 TTEVARVVCGFPGIADVNVYGVEVPGAEGRVGMAAVKFKQAVRVNEFDWQKLYLYIDKNLPPYAQPHFLRVADRSGLTSHMTTTFKQIKTQLRREGFDPARVNEDTLLFRDGVAKTFVPLTRHLYEAICSASVRL 405
TTEVA V + +VNVYGV VPG EGR+GMAA+K K+ +EFD +KL+ ++ LP YA+P FLR+ D T +T TFK K L EGF+PA V +D L F D A+ +VP+T +Y AI + +++L
Sbjct: 47 TTEVADTVGLVDFVQEVNVYGVSVPGHEGRIGMAAIKMKEN---HEFDGKKLFTHVADYLPTYARPRFLRIQD----TIEITGTFKHRKVTLVEEGFNPA-VIKDALYFLDDKAEMYVPMTEDIYNAINNKALKL 173
BLAST of mRNA_H-elongata_contig46916.11789.1 vs. uniprot
Match: A0A3B4BTN6_PYGNA (Very long-chain acyl-CoA synthetase-like n=2 Tax=Serrasalmidae TaxID=42495 RepID=A0A3B4BTN6_PYGNA) HSP 1 Score: 113 bits (282), Expect = 1.740e-26 Identity = 64/135 (47.41%), Postives = 86/135 (63.70%), Query Frame = 1
Query: 1 TTEVARVVCGFPGIADVNVYGVEVPGAEGRVGMAAVKFKQAVRVNEFDWQKLYLYIDKNLPPYAQPHFLRVADRSGLTSHMTTTFKQIKTQLRREGFDPARVNEDTLLFRDGVAKTFVPLTRHLYEAICSASVRL 405
TTEV+ ++ I + N+YGV+VPG EGRVGMAAV K+ EFD K++ +I K+LP YAQP FLR+ T +T TFKQ+K +L EGFDPA ++E L F + ++PLT LY +I + SVRL
Sbjct: 494 TTEVSDIISQLDFIKEGNIYGVQVPGQEGRVGMAAVTIKEGA---EFDGTKMFNHITKHLPSYAQPRFLRIQS----TVEVTGTFKQVKKKLVEEGFDPAGISEP-LYFLSAQERRYIPLTEPLYTSIATGSVRL 620
BLAST of mRNA_H-elongata_contig46916.11789.1 vs. uniprot
Match: A0A1A8U718_NOTFU (Uncharacterized protein (Fragment) n=2 Tax=Nothobranchius TaxID=28779 RepID=A0A1A8U718_NOTFU) HSP 1 Score: 108 bits (269), Expect = 2.030e-26 Identity = 60/135 (44.44%), Postives = 85/135 (62.96%), Query Frame = 1
Query: 1 TTEVARVVCGFPGIADVNVYGVEVPGAEGRVGMAAVKFKQAVRVNEFDWQKLYLYIDKNLPPYAQPHFLRVADRSGLTSHMTTTFKQIKTQLRREGFDPARVNEDTLLFRDGVAKTFVPLTRHLYEAICSASVRL 405
TTEV+ ++ + + NVYGV+VPG EGRVGMAAV K+ EFD K+Y ++ LP YA+P F+R+ +T TFKQ+K +L +GFDP +V +D L F D K++VP+T LY +I S S++L
Sbjct: 115 TTEVSDILSFIDCLQEANVYGVQVPGHEGRVGMAAVSLKED---GEFDGSKVYKHVVSYLPSYARPRFIRIQS----AVEVTGTFKQMKVKLVAQGFDPGQV-QDPLYFLDDCVKSYVPVTAQLYSSILSGSIKL 241
BLAST of mRNA_H-elongata_contig46916.11789.1 vs. uniprot
Match: A0A3L7HEI3_CRIGR (SLC27A2 n=2 Tax=Cricetulus griseus TaxID=10029 RepID=A0A3L7HEI3_CRIGR) HSP 1 Score: 111 bits (277), Expect = 4.460e-26 Identity = 64/135 (47.41%), Postives = 88/135 (65.19%), Query Frame = 1
Query: 1 TTEVARVVCGFPGIADVNVYGVEVPGAEGRVGMAAVKFKQAVRVNEFDWQKLYLYIDKNLPPYAQPHFLRVADRSGLTSHMTTTFKQIKTQLRREGFDPARVNEDTLLFRDGVAKTFVPLTRHLYEAICSASVRL 405
TTEVA +V + +VNVYGV VPG EGR+GMA++K K+ +EF+ +KL+ +I + LP YA+P FLR+ D T +T TFK K L EGF+P V +D L F D AKT+VP+T +Y AI + S++L
Sbjct: 350 TTEVADIVGLVDFVEEVNVYGVPVPGHEGRIGMASIKMKEN---SEFNGKKLFQHISEYLPNYARPRFLRIQD----TIEITGTFKHRKVTLMEEGFNPT-VIKDALYFMDETAKTYVPMTEDIYNAISNKSLKL 476
BLAST of mRNA_H-elongata_contig46916.11789.1 vs. uniprot
Match: A0A8C8U7P1_PERMB (Solute carrier family 27 (fatty acid transporter), member 2 n=1 Tax=Peromyscus maniculatus bairdii TaxID=230844 RepID=A0A8C8U7P1_PERMB) HSP 1 Score: 111 bits (277), Expect = 4.770e-26 Identity = 63/135 (46.67%), Postives = 87/135 (64.44%), Query Frame = 1
Query: 1 TTEVARVVCGFPGIADVNVYGVEVPGAEGRVGMAAVKFKQAVRVNEFDWQKLYLYIDKNLPPYAQPHFLRVADRSGLTSHMTTTFKQIKTQLRREGFDPARVNEDTLLFRDGVAKTFVPLTRHLYEAICSASVRL 405
TTEVA +V + +VNVYGV VPG EGR+GMA++K K+ +EF+ +KL+ +I + LP YA+P FLR+ D T +T TFK K L EGF+P V +D L F D AKT+VP+T +Y AI +++L
Sbjct: 359 TTEVADIVGLVDFVQEVNVYGVPVPGHEGRIGMASIKIKEN---HEFNGKKLFQHISEYLPSYARPRFLRIQD----TIEITGTFKHRKVTLMEEGFNPT-VIKDALYFMDDTAKTYVPMTEDIYNAISDKTIKL 485 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig46916.11789.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig46916.11789.1 >prot_H-elongata_contig46916.11789.1 ID=prot_H-elongata_contig46916.11789.1|Name=mRNA_H-elongata_contig46916.11789.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=136bp TTEVARVVCGFPGIADVNVYGVEVPGAEGRVGMAAVKFKQAVRVNEFDWQback to top mRNA from alignment at H-elongata_contig46916:2..1124+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig46916.11789.1 ID=mRNA_H-elongata_contig46916.11789.1|Name=mRNA_H-elongata_contig46916.11789.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1123bp|location=Sequence derived from alignment at H-elongata_contig46916:2..1124+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig46916:2..1124+ >mRNA_H-elongata_contig46916.11789.1 ID=mRNA_H-elongata_contig46916.11789.1|Name=mRNA_H-elongata_contig46916.11789.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=816bp|location=Sequence derived from alignment at H-elongata_contig46916:2..1124+ (Himanthalia elongata Himel1 dioecious)back to top |