mRNA_H-elongata_contig46861.11783.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig46861.11783.1 vs. uniprot
Match: A0A8B8E383_CRAVI (piggyBac transposable element-derived protein 4-like n=4 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8E383_CRAVI) HSP 1 Score: 98.2 bits (243), Expect = 2.510e-22 Identity = 61/168 (36.31%), Postives = 92/168 (54.76%), Query Frame = 1
Query: 1 FFGLTFPTEAVQLLVDKVNIYRLTNGSSAWPDDGITLTHMNAVIGLVILMGIQNFPEMKLHWDKREMYDFRNVQECMTLDFFLLIYCRFFHMA-STSKARRGNEDYDILHQIRQV--STEMIGCTIYDPGRWISVDEQMVKTKGRFSAGVQRHMPGKLIKHGENALVR 495
+F L FP +Q++VD N+Y +G+ W D T+ M A +GL ILMGI P ++W + QE MTL F I R+FH+ +T++ RG + +D LH+IR V +T + +P + S+DE M+K KGRF A +++MP K +K G +R
Sbjct: 25 YFLLMFPLTLIQVIVDNTNLYARQSGAQGWVDT--TIGEMKAFLGLQILMGIVQLPRYTMYWSSDKYIGNAGFQETMTLKRFEKI-SRYFHLNDNTTQGPRGTQGFDRLHKIRPVLDATRTTFKSEMNPPQQQSIDEGMIKYKGRFFA--RQYMPSKPVKRGLKIFMR 187
BLAST of mRNA_H-elongata_contig46861.11783.1 vs. uniprot
Match: A0A8B8BRJ7_CRAVI (piggyBac transposable element-derived protein 4-like isoform X2 n=1 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8BRJ7_CRAVI) HSP 1 Score: 96.3 bits (238), Expect = 1.290e-21 Identity = 59/162 (36.42%), Postives = 90/162 (55.56%), Query Frame = 1
Query: 1 FFGLTFPTEAVQLLVDKVNIYRLTNGSSAWPDDGITLTHMNAVIGLVILMGIQNFPEMKLHWDKREMYDFRNVQECMTLDFFLLIYCRFFHMA-STSKARRGNEDYDILHQIRQV--STEMIGCTIYDPGRWISVDEQMVKTKGRFSAGVQRHMPGKLIKHG 477
+F L FP +Q++VD N+Y +G+ W D T+ M A +GL ILMGI P ++W + QE MTL F I R+FH+ +T++ RG + +D +H+IR V +T + +P + S+DE M+K KGRF A +++MP K +K G
Sbjct: 25 YFLLMFPLTLIQVIVDNTNLYARQSGAQGWVDT--TIGEMKAFLGLQILMGIVQLPRYTMYWSSDKYIGNAGFQETMTLKRFEKI-SRYFHLNDNTTQGPRGTQGFDSVHKIRPVLDATRTTFKSEMNPPQQQSIDEGMIKYKGRFFA--RQYMPSKPVKRG 181
BLAST of mRNA_H-elongata_contig46861.11783.1 vs. uniprot
Match: A0A8B8DAB9_CRAVI (piggyBac transposable element-derived protein 5-like n=1 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8DAB9_CRAVI) HSP 1 Score: 90.9 bits (224), Expect = 4.190e-19 Identity = 58/161 (36.02%), Postives = 88/161 (54.66%), Query Frame = 1
Query: 4 FGLTFPTEAVQLLVDKVNIYRLTNGSSAWPDDGITLTHMNAVIGLVILMGIQNFPEMKLHWDKREMYDFRNVQECMTLDFFLLIYCRFFHMA-STSKARRGNEDYDILHQIRQV--STEMIGCTIYDPGRWISVDEQMVKTKGRFSAGVQRHMPGKLIKHG 477
F L FP +Q++VD N+Y +G+ W D T+ M A +GL ILMGI P ++W + QE MTL F I R+FH+ +T++ RG + +D LH+IR V +T + +P + S+DE M+K KGRF A +++MP + + G
Sbjct: 104 FLLMFPLTLIQVIVDNTNLYARQSGAQGWVDT--TIGEMKAFLGLQILMGIVQLPRYTMYWSSDKYIGNAGFQETMTLKRFEKI-SRYFHLNDNTTQGPRGTQGFDRLHKIRPVLDATRTTFKSEMNPPQQQSIDEGMIKYKGRFFA--RQYMPKQTSEKG 259
BLAST of mRNA_H-elongata_contig46861.11783.1 vs. uniprot
Match: A0A6H5L3T1_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3T1_9PHAE) HSP 1 Score: 83.6 bits (205), Expect = 1.280e-15 Identity = 48/137 (35.04%), Postives = 66/137 (48.18%), Query Frame = 1
Query: 1 FFGLTFPTEAVQLLVDKVNIY--------------------RLTNGSSAWPDDGITLTHMNAVIGLVILMGIQNFPEMKLHWDKREMYDFRNVQECMTLDFFLLIYCRFFHMASTSKARR---GNED--YDILHQIR 336
FF + FP + LLV K N Y + G S+WP GIT + M VI +++ +G+ P M HW +D++ V+ C+ D FLLIY RFFHMAS+ R G + +D LH IR
Sbjct: 496 FFSIMFPAAVILLLVRKTNEYFNFCRSTKNPKGQEQRHRDQKARKGKSSWPKKGITKSMMQGVISIILTIGLVQLPAMHDHWSCHSFHDYKLVRACLPRDMFLLIYGRFFHMASSGAPERLQGGTTEPGWDSLHHIR 632
BLAST of mRNA_H-elongata_contig46861.11783.1 vs. uniprot
Match: A0A8B6D4L8_MYTGA (DDE_Tnp_1_7 domain-containing protein n=2 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6D4L8_MYTGA) HSP 1 Score: 79.0 bits (193), Expect = 4.830e-14 Identity = 53/169 (31.36%), Postives = 86/169 (50.89%), Query Frame = 1
Query: 1 FFGLTFPTEAVQLLVDKVNIYRLTNGSSAWPDDGITLTHMNAVIGLVILMGIQNFPEMKLHWDKREMYDFRNVQECMTLDFFLLIYCRFFHMASTSKA-RRGNEDYDILHQIRQVSTEMIGCTI---YDPGRWISVDEQMVKTKGRFSAGVQRHMPGKLIKHGENALVR 495
FF L F + Q L ++ N+Y + + +T + A IG+ ILMG+ +L+W ++ MT + F +Y ++ H+ + A R +E +D LH++R + M+ T Y P + +VDE MVK KGRFS ++++MPGK IK G +R
Sbjct: 128 FFQLFFEEQFFQHLTEQTNLYAQQTSENDQHWEEVTTAEIKAFIGINILMGVMQLSSYRLYWSSDPFLGNTGIRSVMTENRFSKLY-QYIHVNNNQTAVPRDSEGFDKLHKVRPM-INMVEHTFKDHYKPKQNQTVDEAMVKYKGRFS--IKQYMPGKPIKRGMKVWMR 292
BLAST of mRNA_H-elongata_contig46861.11783.1 vs. uniprot
Match: A0A8B6FCV9_MYTGA (DDE_Tnp_1_7 domain-containing protein n=2 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6FCV9_MYTGA) HSP 1 Score: 78.6 bits (192), Expect = 5.090e-14 Identity = 53/169 (31.36%), Postives = 86/169 (50.89%), Query Frame = 1
Query: 1 FFGLTFPTEAVQLLVDKVNIYRLTNGSSAWPDDGITLTHMNAVIGLVILMGIQNFPEMKLHWDKREMYDFRNVQECMTLDFFLLIYCRFFHMASTSKA-RRGNEDYDILHQIRQVSTEMIGCTI---YDPGRWISVDEQMVKTKGRFSAGVQRHMPGKLIKHGENALVR 495
FF L F + Q L ++ N+Y + + +T + A IG+ ILMG+ +L+W ++ MT + F +Y ++ H+ + A R +E +D LH++R + M+ T Y P + +VDE MVK KGRFS ++++MPGK IK G +R
Sbjct: 113 FFQLFFVEQFFQHLTEQTNLYAQQTSENDQHWEEVTTAEIKAFIGINILMGVMQLSSYRLYWSSDPFLGNTGIRSVMTENRFSKLY-QYIHVNNNQTAVPRDSEGFDKLHKVRPM-INMVEHTFKYHYKPKQNQTVDEAMVKYKGRFS--IKQYMPGKPIKRGMKVWMR 277
BLAST of mRNA_H-elongata_contig46861.11783.1 vs. uniprot
Match: A0A4Y2E2J2_ARAVE (PiggyBac transposable element-derived protein 2 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2E2J2_ARAVE) HSP 1 Score: 78.6 bits (192), Expect = 5.650e-14 Identity = 53/167 (31.74%), Postives = 89/167 (53.29%), Query Frame = 1
Query: 4 FGLTFPTEAVQLLVDKVNIYRLTNGSSAWPDDGITLTHMNAVIGLVILMGIQNFPEMKLHWDKREMYDFRNVQECMTLDFFLLIYCRFFHMA-STSKARRGNEDYDILHQIRQVSTEMIGCTI---YDPGRWISVDEQMVKTKGRFSAGVQRHMPGKLIKHGENALV 492
F L F + + L+V++ N+Y + ++ +T+ + GL+I+MG P ++L+W K + + + + M L FL I RF H+ +T +G YD L+++R + E + T ++P R IS+DE MVK KGR S ++++MP K IK G V
Sbjct: 128 FSLFFTSTFMNLIVEQSNLYASQHHANL----DLTIEELKDFFGLLIVMGFNKLPSLRLYWSKDLNFASQRIMDVMPLKRFLKIL-RFLHLNDNTRMPLKGQFGYDKLYKVRPLF-EQLNTTFHHAFNPSRCISIDESMVKFKGRSS--LKQYMPLKPIKRGFKVCV 286
BLAST of mRNA_H-elongata_contig46861.11783.1 vs. uniprot
Match: A0A4Y2EP38_ARAVE (PiggyBac transposable element-derived protein 4 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2EP38_ARAVE) HSP 1 Score: 78.6 bits (192), Expect = 6.950e-14 Identity = 53/162 (32.72%), Postives = 88/162 (54.32%), Query Frame = 1
Query: 4 FGLTFPTEAVQLLVDKVNIYRLTNGSSAWPDDGITLTHMNAVIGLVILMGIQNFPEMKLHWDKREMYDFRNVQECMTLDFFLLIYCRFFHMA-STSKARRGNEDYDILHQIRQVSTEMIGCTI---YDPGRWISVDEQMVKTKGRFSAGVQRHMPGKLIKHG 477
F L F + + L+V++ N+Y + ++ +T+ + A GL+I+MG P ++L+W K + + + + M L FL I RF H+ +T +G YD L ++R + E + T ++P R IS+DE MVK KGR S ++++MP K IK G
Sbjct: 129 FSLFFTSTFMNLIVEQSNLYASQHHANL----DLTIEELKAFFGLLIVMGFNKLPSLRLYWSKDLNFASQRIMDVMPLKRFLRIL-RFLHLNDNTRMPLKGQFGYDKLCKVRPLF-EQLNTTFHHAFNPSRCISIDESMVKFKGRSS--LKQYMPLKPIKRG 282
BLAST of mRNA_H-elongata_contig46861.11783.1 vs. uniprot
Match: A0A8B6HKL4_MYTGA (Uncharacterized protein n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6HKL4_MYTGA) HSP 1 Score: 78.2 bits (191), Expect = 8.980e-14 Identity = 53/169 (31.36%), Postives = 85/169 (50.30%), Query Frame = 1
Query: 1 FFGLTFPTEAVQLLVDKVNIYRLTNGSSAWPDDGITLTHMNAVIGLVILMGIQNFPEMKLHWDKREMYDFRNVQECMTLDFFLLIYCRFFHMASTSKA-RRGNEDYDILHQIRQVSTEMIGCTI---YDPGRWISVDEQMVKTKGRFSAGVQRHMPGKLIKHGENALVR 495
FF L F Q L ++ N+Y + + +T + A IG+ ILMG+ +L+W ++ MT + F +Y ++ H+ + A R +E +D LH++R + M+ T Y P + +VDE MVK KGRFS ++++MPGK IK G +R
Sbjct: 128 FFQLFFEERFFQHLTEQTNLYAQQTSENDQHWEEVTTAEIKAFIGINILMGVMQLSSYRLYWSSDPFLGNTGIRSVMTENRFSKLY-QYIHVNNNQTAVPRDSEGFDKLHKVRPM-INMVEHTFKDHYKPKQNQTVDEAMVKYKGRFS--IKQYMPGKPIKRGMKVWMR 292
BLAST of mRNA_H-elongata_contig46861.11783.1 vs. uniprot
Match: A0A087ULN4_STEMI (PiggyBac transposable element-derived protein 4 (Fragment) n=1 Tax=Stegodyphus mimosarum TaxID=407821 RepID=A0A087ULN4_STEMI) HSP 1 Score: 77.4 bits (189), Expect = 1.640e-13 Identity = 54/173 (31.21%), Postives = 87/173 (50.29%), Query Frame = 1
Query: 1 FFGLTFPTEAVQLLVDKVNIY--------RLTNGSSA----WPDDGITLTHMNAVIGLVILMGIQNFPEMKLHWDKREMYDFRNVQECMTLDFFLLIYCRFFHMASTSKARRGNEDYDILHQIRQVSTEMIG--CTIYDPGRWISVDEQMVKTKGRFSAGVQRHMPGKLIKHG 477
+FG F E +Q +VD+ N Y RL + + W + IT + A IG+ ILMGI PE+K +W + + ++V MT F I +++ RG +D LH++R + +++ C Y+P +S+DE M+ KGR S ++++MP K IK G
Sbjct: 38 YFGTIFTEEILQNIVDETNSYANQPKKNKRLGSNTKDIILNWKE--ITSEELKAWIGMHILMGIHQLPELKNYWSTDPILNVQSVARVMTAKRFKKITETLHVNDNSTNPPRGQPGHDKLHKVRPILSQLNDSICKAYEPSSTLSIDECMIAFKGRTS--LKQYMPMKPIKRG 206 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig46861.11783.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig46861.11783.1 >prot_H-elongata_contig46861.11783.1 ID=prot_H-elongata_contig46861.11783.1|Name=mRNA_H-elongata_contig46861.11783.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=168bp FFGLTFPTEAVQLLVDKVNIYRLTNGSSAWPDDGITLTHMNAVIGLVILMback to top mRNA from alignment at H-elongata_contig46861:1260..2790- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig46861.11783.1 ID=mRNA_H-elongata_contig46861.11783.1|Name=mRNA_H-elongata_contig46861.11783.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1531bp|location=Sequence derived from alignment at H-elongata_contig46861:1260..2790- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig46861:1260..2790- >mRNA_H-elongata_contig46861.11783.1 ID=mRNA_H-elongata_contig46861.11783.1|Name=mRNA_H-elongata_contig46861.11783.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1008bp|location=Sequence derived from alignment at H-elongata_contig46861:1260..2790- (Himanthalia elongata Himel1 dioecious)back to top |