mRNA_H-elongata_contig46669.11765.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig46669.11765.1
Unique NamemRNA_H-elongata_contig46669.11765.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig46669.11765.1 vs. uniprot
Match: D7FW47_ECTSI (DNA mismatch repair protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW47_ECTSI)

HSP 1 Score: 874 bits (2259), Expect = 1.270e-302
Identity = 482/680 (70.88%), Postives = 528/680 (77.65%), Query Frame = 1
Query:   34 KKPQSTKLKRGGETTSTSQG-SEAKRLKKASSEAPYAIMETKSPRDSLRGSPGTPSNQRVLIPASSKRSTLGSAKALSRP----SSP-SPPSPRPSQSSSLPEGVLATGRHTHHRLKWLYEDRTDKCRRSPDHLEYNPRTLYVPKSFLKMETPAMQQWWLFKSDNMDTVLFFKVGKFYELFHQDADVGMEELGLIYMKGGKAHSGFPEISYGKFADILVTKGYRVARVEQQVETPDMLKARNASKGKSELKDKVVKREMVSILSRGTRTYCFLDDTSSTPDGSPCSVNMILSIKETPVEIHNEGGATEECVADTDLLPAAVCEYGVCMADATTATFSLGQFADDAARSRLRTLLAQQLPVEIIIENDNLSETTLHMIKCMAPLASRIFLRKGDEFWDSSRTVQELQGGRYFDRSDSSNTKDETG-GVALKYSAWPPILRAVIDGGKDGALALSALGGAIWHIRRALIDHDLLSMKRFVAYIPSDFNRAGGQRGHTSLPLKNCAIDKGGVEDVLPSASSLLGSNAETLMQTHMVLDGVSLSNLEILRNNYDGGEKGSLWAFVNRCSTAFGRRLLKDWLLKPLLLPRHINSRLDAVSELSGALSPEADASRVLLKKLPDLERLLSRVHSMASKHRSSEHPESRAIMYEDTKYSIRKVNDFLTVLDGLEAADRVPEIYSSVSV 2052
            KK   +K KR G+   +  G S AKRLKKAS  A YAI +T SP    RG+ G  S + +  P S+   T+ S+   SRP    SSP SPP+P+      LPEGVL TGRH+HH   WLY++R D  RR PD   YNPRTLYVP SFL  ETPAM QWW FKS NMDTVLFFKVGKFYELFH DADVGM+EL LIYMKG KAHSGFPEISYGKFAD LV+KGYRVARVEQ VETPDMLKARNAS G++  KDKVVKRE+ SILSRGTRTYCFLDD SSTPDGSP SVNMILSIKET V+  +E        AD D  PAAVCEYGVCM DATTATFSLGQFADD ARSRLRTLLAQQLPVEI++E DNLSETTLHMIKCMAPLAS + L KG EFWD+SRTVQEL+  RYF    ++  K   G G       WPPILRAV++GGKDGALALSALGGA WH RRALIDHDLLSM+RFVAYIPSD  +       ++      A D       LPSASSL GS+A+T  Q+HMVLDGVSLSNLE+LRN+ DGGEKGSLWAFVNRCSTAFGRRLLKDW+LKPLL P HIN RLDAVSEL+G LSPEADASR LLKKLPD+ERLLSRVHSMASKHRSSEHPESRAIMYEDTKYSIRKVNDFL+VLDGLE ADR+PEI+ S SV
Sbjct:  197 KKSTPSKKKRSGQAAPSGPGGSGAKRLKKASDLASYAITDTVSPGSGARGATGNASGRSLQSPVSTP--TVRSSPHSSRPFVGLSSPASPPTPKAPAGIPLPEGVLDTGRHSHHSFDWLYKNRVDANRRRPDDPLYNPRTLYVPPSFLSKETPAMVQWWKFKSQNMDTVLFFKVGKFYELFHVDADVGMQELDLIYMKGEKAHSGFPEISYGKFADGLVSKGYRVARVEQ-VETPDMLKARNASVGRNGTKDKVVKRELCSILSRGTRTYCFLDDVSSTPDGSPRSVNMILSIKETAVDALSEFDPGSPGSADADGPPAAVCEYGVCMVDATTATFSLGQFADDPARSRLRTLLAQQLPVEIVMEKDNLSETTLHMIKCMAPLASHMTLHKGTEFWDASRTVQELKNRRYFRNESNAKEKSSAGDGKGSNVEDWPPILRAVVEGGKDGALALSALGGATWHTRRALIDHDLLSMRRFVAYIPSDMKQPDSNAAPSTPNDSQEAGD-------LPSASSLPGSSAQTPSQSHMVLDGVSLSNLEVLRNSSDGGEKGSLWAFVNRCSTAFGRRLLKDWVLKPLLFPTHINGRLDAVSELAGDLSPEADASRALLKKLPDVERLLSRVHSMASKHRSSEHPESRAIMYEDTKYSIRKVNDFLSVLDGLEKADRLPEIFKSASV 866          
BLAST of mRNA_H-elongata_contig46669.11765.1 vs. uniprot
Match: A0A835YGI1_9STRA (DNA mismatch repair protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGI1_9STRA)

HSP 1 Score: 512 bits (1318), Expect = 7.160e-160
Identity = 336/778 (43.19%), Postives = 411/778 (52.83%), Query Frame = 1
Query:   91 GSEAKRLKKASSEAPYAIMETKSPRDSLRGSPGTPSNQRVLIPA------------------SSKRSTLGSAKALSRPSSPSPPSPRPSQSSSLPEGVLATGRHTHHRLKWLYE-DRTDKCRRSPDHLEYNPRTLYVPKSFLKMETPAMQQWWLFKSDNMDTVLFFKVGKFYELFHQDADVGMEELGLIYMKGGKAHSGFPEISYGKFADILVTKGYRVARVEQQVETPDMLKARNASKGKSELKDKVVKREMVSILSRGTRTYCFLDDTSSTPDGSPCSVNMILSIKE----------TPVEIHNEGGATEECVADTDLLPAAVCEYGVCMADATTATFSLGQFADDAARSRLRTLLAQQLPVE--------IIIENDNLSETTLHMIKCMAPLASRIFLRKGDEFWDSSRTVQELQGGRYFDRSDSSNTKDETGGVALKYSAWPPILRAVIDGGKDGALALSALGGAIWHIRRALIDHDLL----------------------------------SMK-----------------------RFVAYIPSDFNRAGGQRGHTSLPLKNCAIDKGGVEDVLPSASSLLGSNAETLMQTHMVLDGVSLSNLEILRNNYDGGEKGSLWAF------------------------------------VNRCSTAFGRRLLKDWLLKPLLLPRHINSRLDAVSELSGALSPEADASRVLLKKLPDLERLLSRVHSMASKHRSSEHPESRAIMYEDTKYSIRKVNDFLTVLDGLEAADRVPEI 2034
            G   KRL+K  +   YAI ETK+P  + +  P   +      P                   S+  +T  +A A++     + P+ RP     LPEGV+ TG H HH++ +L E +R D  RR PDH EY+PRTLYVP  F   ET AMQQWW  KS NMDTVLFFKVGKFYELFH DAD            G KAHSGFPEISYGKFAD LV +GYRVARVEQ  ETPDM+K RN  K K+  KDKVVKRE+ S+LSRGTRTYCFLD  S  PDG+P +   +L+I E           P+E+  +  A E+     D  PAAVCEYG+C+ DA TATF LGQFAD AAR RLRTLLAQ  P E        +I   ++LSETT H++KCM P A    L  G ++W   +T +E+    YF  +  +   +E          WP +LRAV+ GG D  L L+A G A+ H+RR+LIDHDL                                   S+K                       RF AYIP D    G  RG                                   Q +MVLDGV+L+NL++ RN+YDG E+G+LW+                                     VNRCST FGRRLL++WL +PLL    I  RLDAV +L  ALSPEADA R  LK LPD+ERLLSRVHSMAS HR++ HP+SRA+MYE  +Y  RK+ DF  VLDGLEAA  VP +
Sbjct:  325 GKPGKRLRKGGA---YAITETKTPSAAAKKKPAAKAQATASAPRANGKAPXXXXXXXXXXGKSAAAATPDAAAAVAVEGGDASPAGRPRIE--LPEGVINTGGHLHHKMDFLKEGNRMDANRRKPDHPEYSPRTLYVPPGFKTKETAAMQQWWDLKSQNMDTVLFFKVGKFYELFHMDAD------------GEKAHSGFPEISYGKFADTLVERGYRVARVEQ-TETPDMMKERN--KTKAGPKDKVVKRELCSVLSRGTRTYCFLDSLSRAPDGAPGTAAPLLAIVERQLPQTSTPPAPMEVDGDEAAAEDEAGAADAAPAAVCEYGICLVDAATATFRLGQFADTAARPRLRTLLAQAPPAEASLVARANLIFARNSLSETTTHLLKCMVPNALLTQLIPGADYWGPEKTRKEITAAGYFKPNADTKGGEEH---------WPELLRAVVAGGADAELCLAAAGAAVAHLRRSLIDHDLAXXXXXXXXXXXXXXXXXXXXXXXVRDAPLTARLRSVKTATVPCPFTWLTSSMSDARDPLCRFEAYIPPD-ETLGDDRGDXXXXXXXXXXXXXXXXXXXXQG------------QKNMVLDGVALANLDVFRNSYDGSERGTLWSLPHAPPHTRSAAAAXXAAGPAAARSXXXXXXXXXXXLVNRCSTPFGRRLLREWLCRPLLSADAIGLRLDAVEDLITALSPEADALRRKLKGLPDIERLLSRVHSMASLHRATRHPDSRAVMYELDRYGRRKIGDFCYVLDGLEAAAAVPAL 1060          
BLAST of mRNA_H-elongata_contig46669.11765.1 vs. uniprot
Match: W7TDU6_9STRA (DNA mismatch repair protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TDU6_9STRA)

HSP 1 Score: 484 bits (1245), Expect = 4.440e-151
Identity = 289/618 (46.76%), Postives = 373/618 (60.36%), Query Frame = 1
Query:  319 PEGVLATGRHTHHRLKWLYED-RTDKCRRSPDHLEYNPRTLYVPKSFLKMETPAMQQWWLFKSDNMDTVLFFKVGKFYELFHQDADVGMEELGLIYMKGGKAHSGFPEISYGKFADILVTKGYRVARVEQQVETPDMLKARNASKGKSELKDKVVKREMVSILSRGTRTYCFLDDTS------STPDGSPCSVNMILSIKETPVEIH-NEGGATEECVADTDLLPAAVCEYGVCMADATTATFSLGQFADDAARSRLRTLLAQQLPVEIIIENDNLSETTLHMIKCMAPLASRIFLRKGDEFWDSSRTVQELQGGRYFDRSDSSNTKD-----------ETGGVALKYSAWPPILRAVIDGGKDGA-LALSALGGAIWHIRRALIDHDLLSMKRFVAYIPSDFNRAGGQRGHTSLPLKNCAIDKGGVED----VLPSASSLL--------GSNAETLMQT--------------HMVLDGVSLSNLEILRNNYDGGEKGSLWAFVNRCSTAFGRRLLKDWLLKPLLLPRHINSRLDAVSELSGALSPEADASRVLLKKLPDLERLLSRVHSMASKHRSSEHPESRAIMYEDTKYSIRKVNDFLTVLDGLEAADRVPEI 2034
            P+GVL  G+HTHH LKWL++  R D   RSP H +++ RTL VP +FL  ETPAM+QWW FK+ ++DT+LFFKVGKFYE+FH DADV + EL LIYMKG KAHSGFPEI+YGKFA +LV KGYRVAR+EQ VETP+ +K  N   G    K  VV RE+ S+LSRGTRT+C+LD+ +      S P G+P    ++++IK+  VE      G  E  VA           YGVCM D TTATF LGQF D   R RL+T+L+Q  P EI++E      +   +++  AP A    LR G EFWD+ +  +EL+ G YF R      K            E  G+      WP  L+ V    +D A LAL ALGG IW +RR+LID DLLSM+ F  Y P D            +P +   ++ G  E+     L    +LL        G   ETL ++              ++VLDG +L+NLEI RN+YDG  KG+LW  +N C TAFG R L++ L +P   P  IN+RLDAV+EL   LSPEAD  R LLKK+PDLER L+R H++ S HR+ +HP+SRAIMYE  KY+ RK+NDFL+ L+GL+ A +V  I
Sbjct:  358 PDGVLEYGKHTHHGLKWLWDPHRRDAQGRSPQHPDFDRRTLQVPAAFLAKETPAMRQWWEFKAQHLDTILFFKVGKFYEIFHMDADVAVRELDLIYMKGEKAHSGFPEIAYGKFAPLLVEKGYRVARIEQ-VETPEAMKEHNRRCGPG-AKRTVVARELCSVLSRGTRTFCYLDEATFEEGAGSDPTGAP----LLIAIKQEKVEAEAGREGEDEGRVA-----------YGVCMVDPTTATFHLGQFEDGPQRWRLKTMLSQFSPAEILLERGGACASLEQVVRLCAPGALVEMLRPGAEFWDADKAFKELKKGDYFPRGSKKKGKTXXXXXXXXXXXEGEGLMNGCGRWPLTLQVVAAARRDKARLALCALGGVIWQLRRSLIDKDLLSMQSFYPYAPPDVVLRDAA---APMPEETEGLEPGSEEEDIFFCLGGDEALLFDMKKREEGLQRETLGESGRQGGVERKSDHGRYLVLDGTALTNLEIFRNSYDGTGKGTLWEHLNHCRTAFGARKLREMLCRPSQRPGVINARLDAVTELKDELSPEADEIRRLLKKMPDLERQLARHHALGSVHRAEDHPDSRAIMYELDKYNGRKINDFLSTLEGLKTASKVRTI 955          
BLAST of mRNA_H-elongata_contig46669.11765.1 vs. uniprot
Match: A0A3M6V7P2_9STRA (DNA mismatch repair protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6V7P2_9STRA)

HSP 1 Score: 453 bits (1165), Expect = 5.290e-141
Identity = 268/573 (46.77%), Postives = 343/573 (59.86%), Query Frame = 1
Query:  316 LPEGVLATGRHTHHRLKWLYEDRTDKCRRSPDHLEYNPRTLYVPKSFLKMETPAMQQWWLFKSDNMDTVLFFKVGKFYELFHQDADVGMEELGLIYMKGGKAHSGFPEISYGKFADILVTKGYRVARVEQQVETPDMLKARNASKGKSELKDKVVKREMVSILSRGTRTYCFLDDTSSTPDGSPCSVNMILSIKETPVEIHNEGGATEECVADTDLLPAAVCEYGVCMADATTATFSLGQFADDAARSRLRTLLAQQLPVEIIIENDNLSETTLHMIKCMAPLASRIFLRKGDEFWDSSRTVQELQGGRYFDRSDSSNTKDETGGVALKYSAWPPILRAVIDGGK----DGALALSALGGAIWHIRRALIDHDLLSMKRFVAYIPSDFNRAGGQRGHTSLPLKNCAIDKGGVEDVLPSASSLLGSNAETLMQTHMVLDGVSLSNLEILRNNYDGGEKGSLWAFVNRCSTAFGRRLLKDWLLKPLLLPRHINSRLDAVSEL--SGALSPEADASRVLLKKLPDLERLLSRVHSMASKHRSSEHPESRAIMYEDTKYSIRKVNDFLTVLDGLEAA 2016
            LP  V  TG H H  L WL+E R D    +PD L+Y+PRTL VP  FLK ETPAM QWW  K+ NMDTVLFFKVGKFYELFH DADVG +EL LIYMKG KAHSGFPEI+Y K +  LV KGYRVARVEQ  ETPDM+K RN++   S  K KVV+RE+ S+LS GT T  FLD   S+ D        +L++KE+                  DL    V  +GVCM D +T  F L +F D   R RL+TL AQ   VEI+ E  N+SE T  ++K  AP A R  LR G EFWD+S+T+ E++   YF                 K   WP  +   ++  K    DG LA+SALGG IWH+RR++ID +LLS+  F  Y PSD                          D   ++S++  +  E L Q ++VLD  ++ NLE+L N+Y+G   GSL   +++  T+FGRR+ ++W+LKPL   R I  RLDAV EL  +G L  E    R  L++LPDLERLLSR+H++ S HRS EHP+SRAIMYE  +Y++RK+ DFL+VL+G + A
Sbjct:  264 LPSAVAGTGNHIHDSLPWLHEKRRDINGNTPDSLDYDPRTLMVPPEFLKKETPAMVQWWEVKAHNMDTVLFFKVGKFYELFHMDADVGFKELNLIYMKGDKAHSGFPEIAYSKMSSQLVAKGYRVARVEQ-TETPDMMKVRNST---SATKAKVVRREVCSLLSIGTNTVSFLDAPISSQDEVS---KHLLALKES-----------------FDLARKTV-RFGVCMVDCSTGAFQLSEFDDTEQRDRLKTLFAQFHIVEIVTERFNVSEDTRMVLKHAAPAAIRSSLRVGKEFWDASKTIDEIERAGYF-----------------KEHGWPEDVLCFLEMDKVVKPDGQLAISALGGCIWHLRRSIIDQELLSLCNFKRYKPSDEE----------------------ARDARANSSAISAAKGE-LNQQYVVLDSQTIHNLEVLSNSYNGSRSGSLIDIMDKTVTSFGRRMFQEWVLKPLCKTRDIQERLDAVEELGNNGDLMMEI---REFLRRLPDLERLLSRIHALGSAHRSEEHPDSRAIMYESQQYNVRKIKDFLSVLNGFDTA 768          
BLAST of mRNA_H-elongata_contig46669.11765.1 vs. uniprot
Match: H3G5M3_PHYRM (DNA mismatch repair protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G5M3_PHYRM)

HSP 1 Score: 448 bits (1152), Expect = 1.090e-140
Identity = 272/576 (47.22%), Postives = 347/576 (60.24%), Query Frame = 1
Query:  310 SSLPEGVLATGRHTHHRLKWLYEDRTDKCRRSPDHLEYNPRTLYVPKSFLKMETPAMQQWWLFKSDNMDTVLFFKVGKFYELFHQDADVGMEELGLIYMKGGKAHSGFPEISYGKFADILVTKGYRVARVEQQVETPDMLKARNASKGKSELKDKVVKREMVSILSRGTRTYCFLDDTSSTPDGSPCSVNM-ILSIKETPVEIHNEGGATEECVADTDLLPAAVCEYGVCMADATTATFSLGQFADDAARSRLRTLLAQQLPVEIIIENDNLSETTLHMIKCMAPLASRIFLRKGDEFWDSSRTVQELQGGRYFDRSDSSNTKDETGGVALKYSAWPPILRAVIDGGK----DGALALSALGGAIWHIRRALIDHDLLSMKRFVAYIPSDFNRAGGQRGHTSLPLKNCAIDKGGVEDVLPSASSLLGSNAETLMQTHMVLDGVSLSNLEILRNNYDGGEKGSLWAFVNRCSTAFGRRLLKDWLLKPLLLPRHINSRLDAVSEL--SGALSPEADASRVLLKKLPDLERLLSRVHSMASKHRSSEHPESRAIMYEDTKYSIRKVNDFLTVLDGLEAA 2016
            S+LP  V   G H H  L WL+E R D    +PD  +Y+PRT+ VP+ FLK ETPAM QWW  K++NMDTVLFFKVGKFYELFH DADVG +EL LIYMKG KAHSGFPEI+Y K +  LV KGYRVARVEQ  ETPDMLK RN+++ K   K KVV+RE+ S+LS GT T  FLD     P  S   V+  +L++KE           + + V            +GVC+ADA T  F L +F D   R RL+TL AQ   VEII E  N+S+ T  ++K  AP A R  LR G EFWD+S+T+ E++   YF                 K   WP  +   ++  K    DG LA+SALGG IWH+RR++ID +LLS+  F  Y PSD               ++  ++K           SL  + AE L Q ++VLD  ++ NLE+L N+++G   GSL   +++  T+FGRR+ ++W+LKPL     I  RLDAV EL  SG L  E    R  L+KLPDLERLLSR+H++ S HRS EHP+SRAIMYE   Y+IRK+ DFL VLDG +AA
Sbjct:  124 SALPSSVAGAGNHIHDSLPWLHEQRRDINGNTPDSPDYDPRTVKVPQEFLKKETPAMVQWWEVKAENMDTVLFFKVGKFYELFHMDADVGFKELNLIYMKGDKAHSGFPEIAYSKMSAQLVEKGYRVARVEQ-TETPDMLKIRNSNQAK---KSKVVRREVCSLLSIGTNTISFLD----APISSQNRVSKYLLALKEA-------FDPSRKTV-----------RFGVCLADAATGAFQLSEFDDTEQRDRLKTLFAQFHVVEIITERFNISDDTKMVLKHAAPAAIRSSLRVGKEFWDASKTIDEIERAGYF-----------------KEHGWPEDVLYFLEMDKVVKSDGQLAISALGGCIWHLRRSIIDQELLSLCNFRRYKPSDEE------------TRDARVNK-----------SLSAATAE-LNQQYVVLDSQTIQNLEVLTNSFNGTRSGSLIDIMDKTVTSFGRRMFQEWVLKPLCKIGDIQERLDAVEELGNSGDLMMEI---REFLRKLPDLERLLSRIHALGSSHRSKEHPDSRAIMYESQTYNIRKIRDFLAVLDGFDAA 629          
BLAST of mRNA_H-elongata_contig46669.11765.1 vs. uniprot
Match: A0A2D4C922_PYTIN (DNA_MISMATCH_REPAIR_2 domain-containing protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C922_PYTIN)

HSP 1 Score: 442 bits (1137), Expect = 1.980e-137
Identity = 278/626 (44.41%), Postives = 355/626 (56.71%), Query Frame = 1
Query:  142 IMETKSPRDSLRGSPGTPSNQRVLI-PASSKRSTLGSAKALSRPSSPSPPSPRPSQSSSLPEGVLATGRHTHHRLKWLYEDRTDKCRRSPDHLEYNPRTLYVPKSFLKMETPAMQQWWLFKSDNMDTVLFFKVGKFYELFHQDADVGMEELGLIYMKGGKAHSGFPEISYGKFADILVTKGYRVARVEQQVETPDMLKARNASKGKSELKDKVVKREMVSILSRGTRTYCFLDDTSSTPDGSPCSVNMILSIKETPVEIHNEGGATEECVADTDLLPAAVCEYGVCMADATTATFSLGQFADDAARSRLRTLLAQQLPVEIIIENDNLSETTLHMIKCMAPLASRIFLRKGDEFWDSSRTVQELQGGRYFDRSDSSNTKDETGGVALKYSAWPPILRAVIDGGKDGALALSALGGAIWHIRRALIDHDLLSMKRFVAYIPSDFNRAGGQRGHTSLPLKNCAIDKGGVEDVLPSASSLLGSNAETLMQTHMVLDGVSLSNLEILRNNYDGGEKGSLWAFVNRCSTAFGRRLLKDWLLKPLLLPRHINSRLDAVSELSGALSPEADASRVLLKKLPDLERLLSRVHSMASKHRSSEHPESRAIMYEDTKYSIRKVNDFLTVLDGLEAA 2016
            +  TK  + + R SPG  S       PA  K  T  S K ++  +SP   +   + +     GV   G H H  L WL E R D    +PD  +Y+PRTLYVP  FLK ETPAM QWW  KS NMDTVLFFKVGKFYELFH DAD+G +EL LIYMKG KAHSGFPEI+Y K +  LV KGYRVARVEQ  ETP+M++ RN+   KS  K KVV+RE+ S+LS GT T  FLD   S+   S      +++IKET     +EG      VA           YGV +A+  T  F + +F D   R RL+TL+AQ    EI+ E   L   T  ++K  AP A R  L  G EFWD++RTV E+    YFD            G   +   +  + + V++   +G LA+SALGG IWH+RR+LID +LLS+  F  Y PSD      +   TS                         S ++ L Q  +VLD  +L NLEIL NNYDG  KGSL   +++  TAFGRR  +DW++KPL     IN+RLDAV EL        +  R  L++LPD+ERLLSR+H++ S HRS EHP+SRAIMYE   Y+ RK+ DF+ VL+GL+ A
Sbjct:  149 VTPTKDRKPAARSSPGFVSPXXXXSSPAFKKLVTPPSMKKVTTAASPGAGADGSADNVGNASGVYGAGCHIHDSLSWLNEKRRDANGNAPDSPDYDPRTLYVPPDFLKKETPAMAQWWEVKSRNMDTVLFFKVGKFYELFHMDADIGFKELNLIYMKGEKAHSGFPEIAYSKMSSQLVEKGYRVARVEQ-TETPEMMRERNS---KSSTKSKVVRREVCSLLSMGTNTVSFLDAPVSS--SSEQVSRFLMAIKET-----HEGANATLSVAHV------ATRYGVVLANCATGAFHISEFDDTQQRDRLKTLMAQFYVAEIVNERHGLRPETKMILKHSAPNAVRCELAVGKEFWDANRTVDEIARSGYFDEQ----------GWPAEVQKFLAVDKTVLE---EGQLAISALGGCIWHLRRSLIDQELLSLCNFARYTPSD---EAAREASTSA------------------------SESKELAQHFVVLDAQTLQNLEILNNNYDGSRKGSLIDIMDKTVTAFGRRTFQDWVVKPLCKVNEINARLDAVEELVQHQDVIVEI-REYLRRLPDIERLLSRIHALGSVHRSKEHPDSRAIMYESNTYNQRKIRDFVAVLNGLDTA 716          
BLAST of mRNA_H-elongata_contig46669.11765.1 vs. uniprot
Match: A0A0P1AKS9_PLAHL (DNA mismatch repair protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AKS9_PLAHL)

HSP 1 Score: 441 bits (1133), Expect = 1.630e-136
Identity = 260/571 (45.53%), Postives = 337/571 (59.02%), Query Frame = 1
Query:  316 LPEGVLATGRHTHHRLKWLYEDRTDKCRRSPDHLEYNPRTLYVPKSFLKMETPAMQQWWLFKSDNMDTVLFFKVGKFYELFHQDADVGMEELGLIYMKGGKAHSGFPEISYGKFADILVTKGYRVARVEQQVETPDMLKARNASKGKSELKDKVVKREMVSILSRGTRTYCFLDDTSSTPDGSPCSVNMILSIKETPVEIHNEGGATEECVADTDLLPAAVCEYGVCMADATTATFSLGQFADDAARSRLRTLLAQQLPVEIIIENDNLSETTLHMIKCMAPLASRIFLRKGDEFWDSSRTVQELQGGRYFDRSDSSNTKDETGGVALKYSAWPPILRAVIDGGK----DGALALSALGGAIWHIRRALIDHDLLSMKRFVAYIPSDFNRAGGQRGHTSLPLKNCAIDKGGVEDVLPSASSLLGSNAETLMQTHMVLDGVSLSNLEILRNNYDGGEKGSLWAFVNRCSTAFGRRLLKDWLLKPLLLPRHINSRLDAVSELSGALSPEADASRVLLKKLPDLERLLSRVHSMASKHRSSEHPESRAIMYEDTKYSIRKVNDFLTVLDGLEAA 2016
            LP  V   G H H  L WL++DR D   ++PD  +Y+PRTL+VP  FLK ETPAM QWW  K+ NMDT+LFFKVGKFYELFH DADVG +EL LIYMKG KAHSGFPEI+Y K +  LV KGYRVARVEQ  ETPDMLKARN++  K   K KVV+REM S+LS GT T  FLD   S+ D SP     +L++KET          T++ V            +G+CM D  +  F L +F D   R RL+TL AQ   VEI+ E  ++S  T  +++   P A R  LR G EFWD+S+TV E++   YF                 K   WP  +   ++  K    +G LA+SALGG IWH+RR++ID +LLS+  F  Y PSD      +  + +L      ++                       Q ++VLD  ++ NLE+L N+Y+G   GSL   +++  T+FGRR+ +DW+LKPL     I  RLDAV EL G  S      R  L+ LPDLERLLSR+H++ S HRS+EHP+SRAIMYE   Y++RK+ DFL VL+G + A
Sbjct:  243 LPSTVAGAGNHMHDSLPWLHKDRRDINGQTPDSPDYDPRTLWVPPEFLKKETPAMVQWWEVKAQNMDTILFFKVGKFYELFHMDADVGFKELNLIYMKGEKAHSGFPEIAYSKMSAQLVAKGYRVARVEQ-TETPDMLKARNSTLAK---KAKVVRREMCSLLSIGTNTASFLDAPFSSQDQSP---KYLLALKETC-------DVTQKKV-----------RFGICMVDCASGAFQLSEFDDTEQRDRLKTLFAQFNVVEIVTERFHISTDTKLLLQHTVPAAIRSALRVGKEFWDASKTVDEIERAGYF-----------------KDHGWPEEVLHYLEMDKAVKPEGQLAISALGGCIWHLRRSIIDQELLSLCNFKRYKPSDEEARQARAENKALSAAKAELN-----------------------QQYVVLDSQTIQNLEVLCNSYNGSRSGSLIDIMDKTVTSFGRRMFQDWVLKPLCKIGDIQERLDAVEEL-GNSSDLMMEIRAYLRLLPDLERLLSRIHALGSAHRSNEHPDSRAIMYESQIYNVRKIKDFLAVLNGFDKA 747          
BLAST of mRNA_H-elongata_contig46669.11765.1 vs. uniprot
Match: D0N012_PHYIT (DNA mismatch repair protein n=11 Tax=Phytophthora TaxID=4783 RepID=D0N012_PHYIT)

HSP 1 Score: 440 bits (1131), Expect = 3.060e-136
Identity = 262/573 (45.72%), Postives = 339/573 (59.16%), Query Frame = 1
Query:  316 LPEGVLATGRHTHHRLKWLYEDRTDKCRRSPDHLEYNPRTLYVPKSFLKMETPAMQQWWLFKSDNMDTVLFFKVGKFYELFHQDADVGMEELGLIYMKGGKAHSGFPEISYGKFADILVTKGYRVARVEQQVETPDMLKARNASKGKSELKDKVVKREMVSILSRGTRTYCFLDDTSSTPDGSPCSVNMILSIKETPVEIHNEGGATEECVADTDLLPAAVCEYGVCMADATTATFSLGQFADDAARSRLRTLLAQQLPVEIIIENDNLSETTLHMIKCMAPLASRIFLRKGDEFWDSSRTVQELQGGRYFDRSDSSNTKDETGGVALKYSAWPPILRAVIDGGK----DGALALSALGGAIWHIRRALIDHDLLSMKRFVAYIPSDFNRAGGQRGHTSLPLKNCAIDKGGVEDVLPSASSLLGSNAETLMQTHMVLDGVSLSNLEILRNNYDGGEKGSLWAFVNRCSTAFGRRLLKDWLLKPLLLPRHINSRLDAVSEL--SGALSPEADASRVLLKKLPDLERLLSRVHSMASKHRSSEHPESRAIMYEDTKYSIRKVNDFLTVLDGLEAA 2016
            LP  V   G H H  L WL+E+R D    +PD  +Y+PRTL +P  F+K ETPAM QWW  KS NMDTVLFFKVGKFYELFH DAD+G +EL LIYMKG KAHSGFPEI+Y K +  LV KGYRVARVEQ  ETPDMLK RN+S  K   K KVV+RE+ S+LS GT T  FLD   S+ D        +L++KE          AT++ V            +GVCM D +T  F L +F D   R RL+T+ AQ   VEI+ E  N+S+ T  ++K  AP A R  LR G EFWD+S+T+ E++   YF                 K   WP  +   ++  K    +G LA+SALGG IWH+RR LIDH+LLS+  F  Y PSD                          +   +  ++  + AE L Q ++VLD  ++ NLE+L N+++G   G+L   +++  T+FGRR+ ++W+LKPL     I  RLDAV EL  SG L  E    R  L+KLPDLERLLSR+H++ S +RS EHP+SRAIMYE   Y++RK+ DFL VL+G + A
Sbjct:  239 LPSSVAGAGNHIHDSLPWLHEERRDINGNTPDSPDYDPRTLKIPPEFVKKETPAMVQWWEVKSRNMDTVLFFKVGKFYELFHMDADIGFKELNLIYMKGDKAHSGFPEIAYSKMSSQLVAKGYRVARVEQ-TETPDMLKVRNSSLAK---KAKVVRREVCSLLSIGTNTVSFLDAPISSQDQVS---KYLLALKEA-------FDATQKSV-----------RFGVCMVDCSTGAFQLSEFDDTEQRDRLKTMFAQFHVVEIVTERFNISDDTKMVLKHAAPGAIRSSLRVGKEFWDASKTIDEIERAGYF-----------------KEHGWPGAVLYFLEMDKVVKSEGQLAISALGGCIWHLRRCLIDHELLSLCNFKRYKPSDEE----------------------AREARANREAMSAAKAE-LNQQYVVLDSQTIQNLEVLCNSFNGSRSGALIDIMDKTVTSFGRRMFQEWVLKPLCKIGDIQERLDAVEELGTSGDLMMEI---REFLRKLPDLERLLSRIHALGSAYRSKEHPDSRAIMYESQIYNVRKIKDFLAVLNGFDEA 743          
BLAST of mRNA_H-elongata_contig46669.11765.1 vs. uniprot
Match: A0A3R7MPN5_9STRA (DNA mismatch repair protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7MPN5_9STRA)

HSP 1 Score: 438 bits (1127), Expect = 4.050e-136
Identity = 262/583 (44.94%), Postives = 341/583 (58.49%), Query Frame = 1
Query:  286 PSPRPSQSSSLPEGVLATGRHTHHRLKWLYEDRTDKCRRSPDHLEYNPRTLYVPKSFLKMETPAMQQWWLFKSDNMDTVLFFKVGKFYELFHQDADVGMEELGLIYMKGGKAHSGFPEISYGKFADILVTKGYRVARVEQQVETPDMLKARNASKGKSELKDKVVKREMVSILSRGTRTYCFLDDTSSTPDGSPCSVNMILSIKETPVEIHNEGGATEECVADTDLLPAAVCEYGVCMADATTATFSLGQFADDAARSRLRTLLAQQLPVEIIIENDNLSETTLHMIKCMAPLASRIFLRKGDEFWDSSRTVQELQGGRYFDRSDSSNTKDETGGVALKYSAWPPILRAVIDGGK----DGALALSALGGAIWHIRRALIDHDLLSMKRFVAYIPSDFNRAGGQRGHTSLPLKNCAIDKGGVEDVLPSASSLLGSNAETLMQTHMVLDGVSLSNLEILRNNYDGGEKGSLWAFVNRCSTAFGRRLLKDWLLKPLLLPRHINSRLDAVSEL--SGALSPEADASRVLLKKLPDLERLLSRVHSMASKHRSSEHPESRAIMYEDTKYSIRKVNDFLTVLDGLEAA 2016
            PS   +   +LP+ V   G H H  + WL E R D    +PD  +Y+PRT+ VP  FLK ETPAM QWW  K+ NMDTVLFFKVGKFYELFH DAD+G +EL LIYMKG KAHSGFPEI+Y K +  LV KGYRVARVEQ  ETP+MLK RN++   S  K KVV+RE+ S+LS GT T  FLD   S+ D        +L++KET         ++++ V            +G+C+ D  T  F L +F D   R RL+TL AQ   VEI+ E  N+S+ T  ++K  AP A R  LR G EFWD+SRT+ E++   YF                 K   WP  +   ++  K    DG LA+SALGG IWH+RR++ID +LLS+  F  Y PSD                          D   +  S + +    L Q ++VLD  ++ NLE+L N+++G   GSL   +++  T+FGRR+ ++W+LKPL     I  RLDAV EL  SG L  E    R  L+KLPDLERLLSR+H++ S HRS EHP+SRAIMYE   Y+IRK+ DFL+VL+G + A
Sbjct:  264 PSSASADGPALPKAVAGAGSHIHDSISWLNEKRRDINGNTPDSPDYDPRTVKVPPEFLKKETPAMVQWWGVKAHNMDTVLFFKVGKFYELFHMDADIGFKELNLIYMKGDKAHSGFPEIAYSKMSSQLVAKGYRVARVEQ-TETPEMLKVRNST---SATKAKVVRREVCSLLSIGTNTVSFLDAPISSQDQVS---KHLLALKET-------FDSSQKKV-----------RFGICLVDCATGVFRLSEFDDTEQRDRLKTLFAQFHVVEIVTERFNISDDTKMVLKHAAPAAIRSSLRVGKEFWDASRTIDEIERAGYF-----------------KEHGWPVDVLHFLEMDKTVKIDGQLAISALGGCIWHLRRSIIDQELLSLCNFKRYKPSDEE----------------------ARDARTNNESAISAAKAELNQQYVVLDSQTIENLEVLSNSFNGSRSGSLIDIMDKTVTSFGRRMFQEWVLKPLCKTGDIQERLDAVEELGNSGDLMVEI---REFLRKLPDLERLLSRIHALGSAHRSQEHPDSRAIMYESQTYNIRKIRDFLSVLNGFDEA 779          
BLAST of mRNA_H-elongata_contig46669.11765.1 vs. uniprot
Match: M4BJP3_HYAAE (DNA mismatch repair protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BJP3_HYAAE)

HSP 1 Score: 440 bits (1131), Expect = 7.390e-136
Identity = 259/582 (44.50%), Postives = 341/582 (58.59%), Query Frame = 1
Query:  283 PPSPRPSQSSSLPEGVLATGRHTHHRLKWLYEDRTDKCRRSPDHLEYNPRTLYVPKSFLKMETPAMQQWWLFKSDNMDTVLFFKVGKFYELFHQDADVGMEELGLIYMKGGKAHSGFPEISYGKFADILVTKGYRVARVEQQVETPDMLKARNASKGKSELKDKVVKREMVSILSRGTRTYCFLDDTSSTPDGSPCSVNMILSIKETPVEIHNEGGATEECVADTDLLPAAVCEYGVCMADATTATFSLGQFADDAARSRLRTLLAQQLPVEIIIENDNLSETTLHMIKCMAPLASRIFLRKGDEFWDSSRTVQELQGGRYFDRSDSSNTKDETGGVALKYSAWPPILRAVIDGGK----DGALALSALGGAIWHIRRALIDHDLLSMKRFVAYIPSDFNRAGGQRGHTSLPLKNCAIDKGGVEDVLPSASSLLGSNAETLMQTHMVLDGVSLSNLEILRNNYDGGEKGSLWAFVNRCSTAFGRRLLKDWLLKPLLLPRHINSRLDAVSELSGALSPEADASRVLLKKLPDLERLLSRVHSMASKHRSSEHPESRAIMYEDTKYSIRKVNDFLTVLDGLEAA 2016
            P + + + SS LP  V   G H H  L WL+++R D    +PD  +Y+PRT+ VP  FLK ETPAM QWW  K+ NMDTVLFFKVGKFYELFH DAD+G +EL LIYMKG KAHSGFPEI+Y K +  LV KGYRVARVEQ  ETPDMLK RN++  K   K KVV+RE+ S+LS GT T  FLD   S+ D        +L++KE    + N                  +  +G+CM D +T  F L +F D   R RL+TL AQ   VEI+ E  N+S+ T  ++K   P   R  LR G EFWD+S+T+ E++   YF                 K   WP  +   +   K    +G LA+SALGG IWH+RR++ID +LLS+ +F  Y PSD                          D      ++  + AE L Q ++VLD  ++ NLE+L N++DG   GSL   +++  T+FGRR+ ++W+LKPL     I  RLDAV EL        +  R LL+KLPDLERLLSR+H++ S +RS EHP+SRAIMYE  +Y++RK+ DFL+VL+G EAA
Sbjct:  278 PNAEKAADSSELPSSVAGAGNHIHDSLPWLHKERRDINGNAPDSPDYDPRTIKVPPEFLKKETPAMVQWWEVKATNMDTVLFFKVGKFYELFHMDADIGFKELNLIYMKGDKAHSGFPEIAYSKMSSQLVAKGYRVARVEQ-TETPDMLKIRNSTLSK---KAKVVRREVCSLLSIGTNTVSFLDAPISSQDQVS---KHLLALKEFCDPMRN------------------IVRFGLCMVDCSTGAFQLAEFDDTEQRDRLKTLFAQFHIVEIVTERFNMSDATKMVLKYAVPAVIRSTLRVGKEFWDASKTIDEIERAGYF-----------------KEHGWPEDVLCFLKMDKVVKPEGRLAISALGGCIWHLRRSIIDRELLSLCKFKRYKPSDEE----------------------ARDARFDTVAMSAAKAE-LNQQYVVLDSQTIKNLEVLCNSFDGSRSGSLIDIMDKTVTSFGRRMFQEWVLKPLCKICDIQERLDAVEELGNCGDVMVEI-RELLRKLPDLERLLSRIHALGSAYRSKEHPDSRAIMYESQQYNVRKIKDFLSVLNGFEAA 793          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig46669.11765.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FW47_ECTSI1.270e-30270.88DNA mismatch repair protein n=2 Tax=Ectocarpus Tax... [more]
A0A835YGI1_9STRA7.160e-16043.19DNA mismatch repair protein n=1 Tax=Tribonema minu... [more]
W7TDU6_9STRA4.440e-15146.76DNA mismatch repair protein n=2 Tax=Monodopsidacea... [more]
A0A3M6V7P2_9STRA5.290e-14146.77DNA mismatch repair protein n=2 Tax=Peronospora ef... [more]
H3G5M3_PHYRM1.090e-14047.22DNA mismatch repair protein n=1 Tax=Phytophthora r... [more]
A0A2D4C922_PYTIN1.980e-13744.41DNA_MISMATCH_REPAIR_2 domain-containing protein (F... [more]
A0A0P1AKS9_PLAHL1.630e-13645.53DNA mismatch repair protein n=1 Tax=Plasmopara hal... [more]
D0N012_PHYIT3.060e-13645.72DNA mismatch repair protein n=11 Tax=Phytophthora ... [more]
A0A3R7MPN5_9STRA4.050e-13644.94DNA mismatch repair protein n=3 Tax=Phytophthora k... [more]
M4BJP3_HYAAE7.390e-13644.50DNA mismatch repair protein n=1 Tax=Hyaloperonospo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig46669contigH-elongata_contig46669:525..4333 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score881.7
Seed ortholog evalue2.2e-253
Seed eggNOG ortholog2880.D7FW47
Preferred nameMSH6
KEGG koko:K08737
KEGG Pathwayko01524,ko03430,ko05200,ko05210,map01524,map03430,map05200,map05210
KEGG ModuleM00295
GOsGO:0000003,GO:0000018,GO:0000075,GO:0000077,GO:0000166,GO:0000217,GO:0000228,GO:0000278,GO:0000400,GO:0000403,GO:0000404,GO:0000406,GO:0000710,GO:0000785,GO:0000790,GO:0001775,GO:0002200,GO:0002204,GO:0002208,GO:0002250,GO:0002252,GO:0002263,GO:0002285,GO:0002312,GO:0002366,GO:0002376,GO:0002377,GO:0002381,GO:0002440,GO:0002443,GO:0002449,GO:0002460,GO:0002520,GO:0002562,GO:0002566,GO:0002637,GO:0002639,GO:0002682,GO:0002684,GO:0002694,GO:0002696,GO:0002697,GO:0002699,GO:0002700,GO:0002702,GO:0002703,GO:0002705,GO:0002706,GO:0002708,GO:0002712,GO:0002714,GO:0002819,GO:0002821,GO:0002822,GO:0002824,GO:0002889,GO:0002891,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005794,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006298,GO:0006310,GO:0006725,GO:0006807,GO:0006915,GO:0006950,GO:0006955,GO:0006974,GO:0006996,GO:0007049,GO:0007093,GO:0007095,GO:0007154,GO:0007165,GO:0007275,GO:0007346,GO:0007568,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0008156,GO:0008219,GO:0008284,GO:0008340,GO:0008630,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0010259,GO:0010389,GO:0010556,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010948,GO:0010972,GO:0012501,GO:0012505,GO:0016043,GO:0016064,GO:0016444,GO:0016445,GO:0016446,GO:0016447,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0019724,GO:0022402,GO:0022414,GO:0023052,GO:0030554,GO:0030888,GO:0030890,GO:0030983,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031570,GO:0031572,GO:0031974,GO:0031981,GO:0032135,GO:0032137,GO:0032138,GO:0032300,GO:0032301,GO:0032302,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032875,GO:0032876,GO:0032944,GO:0032946,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0035064,GO:0035556,GO:0035639,GO:0036094,GO:0036297,GO:0042113,GO:0042127,GO:0042393,GO:0042623,GO:0043085,GO:0043111,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043570,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044773,GO:0044774,GO:0044818,GO:0045005,GO:0045190,GO:0045191,GO:0045321,GO:0045786,GO:0045830,GO:0045910,GO:0045911,GO:0045930,GO:0045934,GO:0045935,GO:0046483,GO:0046649,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048731,GO:0048856,GO:0050670,GO:0050671,GO:0050776,GO:0050778,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050864,GO:0050865,GO:0050867,GO:0050871,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051094,GO:0051095,GO:0051096,GO:0051171,GO:0051172,GO:0051173,GO:0051239,GO:0051240,GO:0051249,GO:0051251,GO:0051276,GO:0051321,GO:0051336,GO:0051345,GO:0051716,GO:0051726,GO:0060255,GO:0061982,GO:0065007,GO:0065009,GO:0070013,GO:0070663,GO:0070665,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090329,GO:0097159,GO:0097190,GO:0097193,GO:0097367,GO:0140030,GO:0140034,GO:1901265,GO:1901360,GO:1901363,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902749,GO:1902750,GO:1903046,GO:1903047,GO:1990391,GO:2000026,GO:2000104,GO:2000112,GO:2000113
EggNOG free text desc.mismatched DNA binding
EggNOG OGsCOG0249@1,KOG0217@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMutS protein homolog 6
Ec32 orthologEc-01_003350.1
Exons7
Model size2052
Cds size2052
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930772.1260083-CDS-H-elongata_contig46669:524..10581622930772.1260083-CDS-H-elongata_contig46669:524..1058Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46669 525..1058 +
1691679563.2020729-CDS-H-elongata_contig46669:524..10581691679563.2020729-CDS-H-elongata_contig46669:524..1058Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46669 525..1058 +
1622930772.1468682-CDS-H-elongata_contig46669:1195..13661622930772.1468682-CDS-H-elongata_contig46669:1195..1366Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46669 1196..1366 +
1691679563.2167976-CDS-H-elongata_contig46669:1195..13661691679563.2167976-CDS-H-elongata_contig46669:1195..1366Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46669 1196..1366 +
1622930772.1596718-CDS-H-elongata_contig46669:1592..17841622930772.1596718-CDS-H-elongata_contig46669:1592..1784Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46669 1593..1784 +
1691679563.2246478-CDS-H-elongata_contig46669:1592..17841691679563.2246478-CDS-H-elongata_contig46669:1592..1784Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46669 1593..1784 +
1622930772.1747708-CDS-H-elongata_contig46669:2023..22391622930772.1747708-CDS-H-elongata_contig46669:2023..2239Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46669 2024..2239 +
1691679563.2323573-CDS-H-elongata_contig46669:2023..22391691679563.2323573-CDS-H-elongata_contig46669:2023..2239Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46669 2024..2239 +
1622930772.1894472-CDS-H-elongata_contig46669:2390..30431622930772.1894472-CDS-H-elongata_contig46669:2390..3043Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46669 2391..3043 +
1691679563.2401237-CDS-H-elongata_contig46669:2390..30431691679563.2401237-CDS-H-elongata_contig46669:2390..3043Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46669 2391..3043 +
1622930772.202168-CDS-H-elongata_contig46669:3319..35271622930772.202168-CDS-H-elongata_contig46669:3319..3527Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46669 3320..3527 +
1691679563.2481632-CDS-H-elongata_contig46669:3319..35271691679563.2481632-CDS-H-elongata_contig46669:3319..3527Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46669 3320..3527 +
1622930772.2183013-CDS-H-elongata_contig46669:4255..43331622930772.2183013-CDS-H-elongata_contig46669:4255..4333Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46669 4256..4333 +
1691679563.266137-CDS-H-elongata_contig46669:4255..43331691679563.266137-CDS-H-elongata_contig46669:4255..4333Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46669 4256..4333 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig46669.11765.1prot_H-elongata_contig46669.11765.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig46669 525..4333 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig46669.11765.1

>prot_H-elongata_contig46669.11765.1 ID=prot_H-elongata_contig46669.11765.1|Name=mRNA_H-elongata_contig46669.11765.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=684bp
NQDSDGLLTPCKKPQSTKLKRGGETTSTSQGSEAKRLKKASSEAPYAIME
TKSPRDSLRGSPGTPSNQRVLIPASSKRSTLGSAKALSRPSSPSPPSPRP
SQSSSLPEGVLATGRHTHHRLKWLYEDRTDKCRRSPDHLEYNPRTLYVPK
SFLKMETPAMQQWWLFKSDNMDTVLFFKVGKFYELFHQDADVGMEELGLI
YMKGGKAHSGFPEISYGKFADILVTKGYRVARVEQQVETPDMLKARNASK
GKSELKDKVVKREMVSILSRGTRTYCFLDDTSSTPDGSPCSVNMILSIKE
TPVEIHNEGGATEECVADTDLLPAAVCEYGVCMADATTATFSLGQFADDA
ARSRLRTLLAQQLPVEIIIENDNLSETTLHMIKCMAPLASRIFLRKGDEF
WDSSRTVQELQGGRYFDRSDSSNTKDETGGVALKYSAWPPILRAVIDGGK
DGALALSALGGAIWHIRRALIDHDLLSMKRFVAYIPSDFNRAGGQRGHTS
LPLKNCAIDKGGVEDVLPSASSLLGSNAETLMQTHMVLDGVSLSNLEILR
NNYDGGEKGSLWAFVNRCSTAFGRRLLKDWLLKPLLLPRHINSRLDAVSE
LSGALSPEADASRVLLKKLPDLERLLSRVHSMASKHRSSEHPESRAIMYE
DTKYSIRKVNDFLTVLDGLEAADRVPEIYSSVSV
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mRNA from alignment at H-elongata_contig46669:525..4333+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig46669.11765.1 ID=mRNA_H-elongata_contig46669.11765.1|Name=mRNA_H-elongata_contig46669.11765.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3809bp|location=Sequence derived from alignment at H-elongata_contig46669:525..4333+ (Himanthalia elongata Himel1 dioecious)
AATCAGGACTCGGACGGCCTTCTTACACCATGCAAGAAGCCACAATCAAC CAAGCTCAAACGCGGTGGGGAGACTACATCAACATCTCAAGGGTCGGAAG CAAAACGGCTCAAGAAGGCATCAAGTGAAGCTCCTTACGCCATAATGGAA ACCAAATCGCCGAGAGATTCGCTCCGTGGCTCTCCAGGGACCCCATCGAA CCAACGCGTCTTGATTCCAGCTTCTTCCAAACGCTCCACCCTTGGGAGTG CCAAAGCCCTGTCGAGACCCAGTTCTCCTTCTCCTCCATCTCCGAGGCCG AGCCAGAGCTCTTCCCTGCCAGAGGGTGTGCTGGCTACAGGCCGCCATAC CCACCACAGATTAAAATGGCTGTATGAGGACCGTACAGACAAATGTCGGC GAAGCCCAGACCATCTGGAGTACAACCCGCGCACCCTGTACGTGCCGAAA TCTTTTCTCAAGATGGAAACTCCGGCGATGCAGCAGTGGTGGCTCTTCAA GAGTGACAACATGGACACAGTCCTGTTTTTCAAGGTATATAAATGTCGTG TACAAGGCTCTAACTCTATCGGACGACTTACGGTATGAAGTAAGCATGGG TTGTTCTGTCCTACACTTCGCTTTTTGAGGAATACCTGGTGAGCTGCGCC TGTTTTTTACGTATCCAACAGGTGGGTAAATTCTACGAGCTTTTCCATCA AGATGCAGACGTGGGAATGGAGGAACTGGGTCTGATATACATGAAAGGTG GCAAGGCACACAGTGGCTTCCCGGAAATATCATACGGCAAGTTTGCTGAT ATTCTGGTGACGAAGGGCTACCGGGTTGCCCGAGTCGAGCAGGTATGCTA TCTGACGGGAACCCTTTCTGTCACGTACAGTACCTTGACGGATTATACTG GATCATTCTAAATCTGAAGACATTCAAGAAAATTCACGCTAATAATTTTA TCCGAAGTTAGTTTTCAGGGGAGACGTTTGCTGGTCTGGACCGCCGTCTG GGGTTATGGCGGTGTCATTTATTCTTTGGATTGTAACCAATGCTCACAGG TGCCATGCTTTGCACAAGCAGGTTGAAACCCCGGACATGCTGAAGGCTCG TAATGCGTCGAAAGGCAAGAGTGAGCTTAAGGACAAGGTTGTGAAACGCG AGATGGTTAGCATCCTCAGTCGTGGAACACGCACATACTGCTTTTTGGAC GACACGTCTTCCACGCCGGACGGCTCCCCATGCTCCGTCAACATGATTCT TTCCATCAAAGTGAGCAGGCATGTTCGGTTTCATAGCGCCTGCTAACCCC CGACGGAGTATTCCGTCAAACTTTTGGCGTTCCGGGGCGTGCACATAGCG ACATGTCCCATTCTTTTGTGCTCGTGTTGATATTAACACGGTTGCATTTA GTGCATTAATGGAGCCAGGTTAATCTTTACAGAAGTATAGATGCCAATAC TCTGAAGAATAATATTGATGTTGGGAAGAAAACCTCTTAAATAATGCAGG AGACCCCCGTCGAGATTCACAACGAAGGAGGTGCCACTGAGGAATGCGTG GCGGATACCGACCTTCTCCCGGCGGCAGTTTGCGAGTATGGTGTCTGCAT GGCCGATGCGACGACCGCGACATTCAGCCTAGGACAATTCGCTGACGATG CTGCCCGCTCCCGTCTACGGACACTTTTGGCGCAGCAGTTACCTGTTGAG ATAATCATCGAGAATGTGAGGTGCTGAGTTTTATATATGGTACGTATTAT ATCTAATAAAAAAGGCGAAGTGTGGAATGATATAATATGATAGTCTGCCC AGTCGCCGGTAGAAGAGAGCCGAAATAATTCTGAGGACCAAACGTTTGGC CCCTTCATCCTCACAGGACAACCTGTCAGAGACTACTCTGCACATGATCA AGTGCATGGCTCCGTTGGCTTCACGCATTTTCCTTCGAAAGGGAGACGAG TTCTGGGACTCCAGCCGGACTGTGCAAGAGCTCCAGGGAGGTAGATACTT CGACAGGAGCGACTCCTCCAACACAAAAGACGAAACAGGCGGTGTTGCCT TGAAATATAGCGCATGGCCACCGATTCTTCGCGCAGTCATCGACGGCGGA AAGGATGGTGCCTTGGCCTTATCCGCGTTGGGAGGTGCCATCTGGCACAT CCGACGTGCTCTCATAGACCACGATCTTCTGTCGATGAAACGCTTCGTGG CATACATTCCTTCAGACTTCAATCGAGCGGGTGGTCAGCGTGGCCACACC TCCCTGCCCCTCAAGAACTGTGCGATCGACAAGGGAGGGGTGGAAGACGT CCTTCCTAGCGCTTCCTCTCTGCTCGGAAGTAACGCGGAGACCCTGATGC AGACTCACATGGTCCTTGATGGCGTTTCCCTGTCGAACCTTGAGATACTT CGCAATAACTACGACGGTGGCGAAAAGGGAAGCCTGTGGGCGTTCGTTAA TCGTTGCAGCACGGCTTTTGGCAGGCGTTTGCTGAAGGATTGGTTGCTCA AACCTCTCCTCCTACCAAGGTAATGTGTTTGCAAGCCACCCGCCGTACCT AAGTGATATATTTTTTCAGCGATCTCAACAGCGTAATGTAACAGTGTACG TCCATTGTGCCAATAGAGCATAAGCCTTTAGGAAGACTAAAGGGGATTCC ATCCTTCGAGAATTGTTATCATTTGCTGCATGGGTGTCGCTCCGTAGAAA ATACAATTCGCGAAGCTTCACATTTCATCCTTAGTCGTGTAATTAATCAG CTTTTTACCTACCCAATTGCTCCCCGCTGTGTTGACGTTGCTCAGACATA TCAACAGTCGTTTGGACGCGGTTTCAGAGCTGTCCGGTGCTCTCTCTCCC GAGGCTGATGCTTCGCGGGTGCTTCTCAAAAAGCTTCCTGACCTAGAACG GCTTCTATCACGCGTTCATTCAATGGCCTCCAAGCACAGAAGCAGCGAAC ACCCAGAGAGTAGGGCTATAATGTACGAAGACACCAAGTACTCAATTCGC AAGGTTTGTTGTACATATGTCTTGAAAAAACTGGATACACAATGCAGCGG CTTGCAGTTGGCACAATCTCTTTTTTTCTACAAAGTGTCCGTACACGAGA CGAGAGACGATTTCCAATTGGTCGATATTGCCGTACCCTGTAGATTGGTG TACGCGTACATCCTCCCCGACCCGTGGAGATCCAGACTTCCCCGGTTCAT GATTTTGAAGTATAATTCGAAATTGATGTGAAATATGAGTTTCATTCTTG GTCATGTTTGTTGTCGGTTGTCTTCACATTTGTCCTATGACTACGACCGA TTCCCAACCCCGCTTAAAGAAATAAACAGAAAAATATCCCCAAAACCAAG AAACCATGAAGTACGAAGTTCACATCCATGTTCAGGTAAACGAAAGTAAA AATACTCTTCGTACAAGTAGAAGATAACAAATAAATATATATACTATACG AAGTATAATAATACTAGGATATCGATTAGAGACAAAAGTAGCACTTTCTT ATGCGCAGGCGACCGCTTGTAGCACTGGAGTACGTGATAAAATCTGAGCT GTCACAGTCTTGCGGGCCCGAAGCAGTTTCATTCGCGTTTTAAAGAACCA ACATTTCGCTATTTAACGAAGTGTCCACAAGTCGTTGTAATGTGCTAATA AAGGCGAAATAAATTCCGGTTGATCCCTACTCTGCTCTATGTAATGACGT CATGACCGCACACACAATTTGGCTGTTTCAGGTGAACGACTTCCTCACAG TACTCGACGGCCTCGAGGCAGCGGACCGCGTGCCCGAGATATACTCGTCG GTTAGTGTT
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Coding sequence (CDS) from alignment at H-elongata_contig46669:525..4333+

>mRNA_H-elongata_contig46669.11765.1 ID=mRNA_H-elongata_contig46669.11765.1|Name=mRNA_H-elongata_contig46669.11765.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=4104bp|location=Sequence derived from alignment at H-elongata_contig46669:525..4333+ (Himanthalia elongata Himel1 dioecious)
AATCAGGACTCGGACGGCCTTCTTACACCATGCAAGAAGCCACAATCAAC
CAAGCTCAAACGCGGTGGGGAGACTACATCAACATCTCAAGGGTCGGAAG
CAAAACGGCTCAAGAAGGCATCAAGTGAAGCTCCTTACGCCATAATGGAA
ACCAAATCGCCGAGAGATTCGCTCCGTGGCTCTCCAGGGACCCCATCGAA
CCAACGCGTCTTGATTCCAGCTTCTTCCAAACGCTCCACCCTTGGGAGTG
CCAAAGCCCTGTCGAGACCCAGTTCTCCTTCTCCTCCATCTCCGAGGCCG
AGCCAGAGCTCTTCCCTGCCAGAGGGTGTGCTGGCTACAGGCCGCCATAC
CCACCACAGATTAAAATGGCTGTATGAGGACCGTACAGACAAATGTCGGC
GAAGCCCAGACCATCTGGAGTACAACCCGCGCACCCTGTACGTGCCGAAA
TCTTTTCTCAAGATGGAAACTCCGGCGATGCAGCAGTGGTGGCTCTTCAA
GAGTGACAACATGGACACAGTCCTGTTTTTCAAGAATCAGGACTCGGACG
GCCTTCTTACACCATGCAAGAAGCCACAATCAACCAAGCTCAAACGCGGT
GGGGAGACTACATCAACATCTCAAGGGTCGGAAGCAAAACGGCTCAAGAA
GGCATCAAGTGAAGCTCCTTACGCCATAATGGAAACCAAATCGCCGAGAG
ATTCGCTCCGTGGCTCTCCAGGGACCCCATCGAACCAACGCGTCTTGATT
CCAGCTTCTTCCAAACGCTCCACCCTTGGGAGTGCCAAAGCCCTGTCGAG
ACCCAGTTCTCCTTCTCCTCCATCTCCGAGGCCGAGCCAGAGCTCTTCCC
TGCCAGAGGGTGTGCTGGCTACAGGCCGCCATACCCACCACAGATTAAAA
TGGCTGTATGAGGACCGTACAGACAAATGTCGGCGAAGCCCAGACCATCT
GGAGTACAACCCGCGCACCCTGTACGTGCCGAAATCTTTTCTCAAGATGG
AAACTCCGGCGATGCAGCAGTGGTGGCTCTTCAAGAGTGACAACATGGAC
ACAGTCCTGTTTTTCAAGGTGGGTAAATTCTACGAGCTTTTCCATCAAGA
TGCAGACGTGGGAATGGAGGAACTGGGTCTGATATACATGAAAGGTGGCA
AGGCACACAGTGGCTTCCCGGAAATATCATACGGCAAGTTTGCTGATATT
CTGGTGACGAAGGGCTACCGGGTTGCCCGAGTCGAGCAGGTGGGTAAATT
CTACGAGCTTTTCCATCAAGATGCAGACGTGGGAATGGAGGAACTGGGTC
TGATATACATGAAAGGTGGCAAGGCACACAGTGGCTTCCCGGAAATATCA
TACGGCAAGTTTGCTGATATTCTGGTGACGAAGGGCTACCGGGTTGCCCG
AGTCGAGCAGCAGGTTGAAACCCCGGACATGCTGAAGGCTCGTAATGCGT
CGAAAGGCAAGAGTGAGCTTAAGGACAAGGTTGTGAAACGCGAGATGGTT
AGCATCCTCAGTCGTGGAACACGCACATACTGCTTTTTGGACGACACGTC
TTCCACGCCGGACGGCTCCCCATGCTCCGTCAACATGATTCTTTCCATCA
AACAGGTTGAAACCCCGGACATGCTGAAGGCTCGTAATGCGTCGAAAGGC
AAGAGTGAGCTTAAGGACAAGGTTGTGAAACGCGAGATGGTTAGCATCCT
CAGTCGTGGAACACGCACATACTGCTTTTTGGACGACACGTCTTCCACGC
CGGACGGCTCCCCATGCTCCGTCAACATGATTCTTTCCATCAAAGAGACC
CCCGTCGAGATTCACAACGAAGGAGGTGCCACTGAGGAATGCGTGGCGGA
TACCGACCTTCTCCCGGCGGCAGTTTGCGAGTATGGTGTCTGCATGGCCG
ATGCGACGACCGCGACATTCAGCCTAGGACAATTCGCTGACGATGCTGCC
CGCTCCCGTCTACGGACACTTTTGGCGCAGCAGTTACCTGTTGAGATAAT
CATCGAGAATGAGACCCCCGTCGAGATTCACAACGAAGGAGGTGCCACTG
AGGAATGCGTGGCGGATACCGACCTTCTCCCGGCGGCAGTTTGCGAGTAT
GGTGTCTGCATGGCCGATGCGACGACCGCGACATTCAGCCTAGGACAATT
CGCTGACGATGCTGCCCGCTCCCGTCTACGGACACTTTTGGCGCAGCAGT
TACCTGTTGAGATAATCATCGAGAATGACAACCTGTCAGAGACTACTCTG
CACATGATCAAGTGCATGGCTCCGTTGGCTTCACGCATTTTCCTTCGAAA
GGGAGACGAGTTCTGGGACTCCAGCCGGACTGTGCAAGAGCTCCAGGGAG
GTAGATACTTCGACAGGAGCGACTCCTCCAACACAAAAGACGAAACAGGC
GGTGTTGCCTTGAAATATAGCGCATGGCCACCGATTCTTCGCGCAGTCAT
CGACGGCGGAAAGGATGGTGCCTTGGCCTTATCCGCGTTGGGAGGTGCCA
TCTGGCACATCCGACGTGCTCTCATAGACCACGATCTTCTGTCGATGAAA
CGCTTCGTGGCATACATTCCTTCAGACTTCAATCGAGCGGGTGGTCAGCG
TGGCCACACCTCCCTGCCCCTCAAGAACTGTGCGATCGACAAGGGAGGGG
TGGAAGACGTCCTTCCTAGCGCTTCCTCTCTGCTCGGAAGTAACGCGGAG
ACCCTGATGCAGACTCACATGGTCCTTGATGGCGTTTCCCTGTCGAACCT
TGAGATACTTCGCAATAACTACGACGGTGGCGAAAAGGGAAGCCTGTGGG
CGTTCGTTAATCGTTGCAGCACGGCTTTTGGCAGGCGTTTGCTGAAGGAT
TGGTTGCTCAAACCTCTCCTCCTACCAAGGACAACCTGTCAGAGACTACT
CTGCACATGATCAAGTGCATGGCTCCGTTGGCTTCACGCATTTTCCTTCG
AAAGGGAGACGAGTTCTGGGACTCCAGCCGGACTGTGCAAGAGCTCCAGG
GAGGTAGATACTTCGACAGGAGCGACTCCTCCAACACAAAAGACGAAACA
GGCGGTGTTGCCTTGAAATATAGCGCATGGCCACCGATTCTTCGCGCAGT
CATCGACGGCGGAAAGGATGGTGCCTTGGCCTTATCCGCGTTGGGAGGTG
CCATCTGGCACATCCGACGTGCTCTCATAGACCACGATCTTCTGTCGATG
AAACGCTTCGTGGCATACATTCCTTCAGACTTCAATCGAGCGGGTGGTCA
GCGTGGCCACACCTCCCTGCCCCTCAAGAACTGTGCGATCGACAAGGGAG
GGGTGGAAGACGTCCTTCCTAGCGCTTCCTCTCTGCTCGGAAGTAACGCG
GAGACCCTGATGCAGACTCACATGGTCCTTGATGGCGTTTCCCTGTCGAA
CCTTGAGATACTTCGCAATAACTACGACGGTGGCGAAAAGGGAAGCCTGT
GGGCGTTCGTTAATCGTTGCAGCACGGCTTTTGGCAGGCGTTTGCTGAAG
GATTGGTTGCTCAAACCTCTCCTCCTACCAAGACATATCAACAGTCGTTT
GGACGCGGTTTCAGAGCTGTCCGGTGCTCTCTCTCCCGAGGCTGATGCTT
CGCGGGTGCTTCTCAAAAAGCTTCCTGACCTAGAACGGCTTCTATCACGC
GTTCATTCAATGGCCTCCAAGCACAGAAGCAGCGAACACCCAGAGAGTAG
GGCTATAATGTACGAAGACACCAAGTACTCAATTCGCAAGACATATCAAC
AGTCGTTTGGACGCGGTTTCAGAGCTGTCCGGTGCTCTCTCTCCCGAGGC
TGATGCTTCGCGGGTGCTTCTCAAAAAGCTTCCTGACCTAGAACGGCTTC
TATCACGCGTTCATTCAATGGCCTCCAAGCACAGAAGCAGCGAACACCCA
GAGAGTAGGGCTATAATGTACGAAGACACCAAGTACTCAATTCGCAAGGT
GAACGACTTCCTCACAGTACTCGACGGCCTCGAGGCAGCGGACCGCGTGC
CCGAGATATACTCGTCGGTTAGTGTTGTGAACGACTTCCTCACAGTACTC
GACGGCCTCGAGGCAGCGGACCGCGTGCCCGAGATATACTCGTCGGTTAG
TGTT
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