mRNA_H-elongata_contig4664.11763.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig4664.11763.1
Unique NamemRNA_H-elongata_contig4664.11763.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig4664.11763.1 vs. uniprot
Match: A0A6H5KPV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV7_9PHAE)

HSP 1 Score: 456 bits (1172), Expect = 2.440e-153
Identity = 237/348 (68.10%), Postives = 274/348 (78.74%), Query Frame = 1 
Query:    1 LMISVAEHFEEKGELEKAVQLFQXXXXXXXXXXLCFKAV----EEKDGDGRDGGGEPRSSMFEALKAMTEDLGTTASPEVVTRCVDFFVDNGHFDKAVGLCITKHRYLRAIELCVEHKVPISEEMAEKLTPA-GGGENKDVN---------------FTEDTREDVLEALAKACKRQGKFQLACKKYTQAGDRLKAMKCLLKGGDTKSVVYYAGVSRTRDIYILAANYLQNLDWHNDPQVMKSIITFYTKAKAQKQLANFYDACAEVEIDEYRDYDKALGALNEAVKQLNKAGLTGDKLVQLNKRVFLVERFVQARRLAKDDPIGMVAICQQLLANKELETAVRVGDV 984
            LM+SVA++ ++KGELEKAVQL+Q          LCF++     E     G +G GE   +MFEALK+M +DLG+ ASP+V++RCV+FFV NG FDKAVGLCIT  ++L+AIELCV HKVPISE+MAE+LTP   GGE+ +                   E TREDVL  LAKACKRQG F LACKKYTQAGDRLKA+KCLLK GDTKS+VYYAGVSR+RDIYILAANYLQNLDWH+DPQVMKSII FYTKAKA  QL++FYDACA+VEIDEYRDY+KALGA+NEA +QL KAG  GDKL QLNKRVFLVERFVQARRLAKDDP GM A+CQQLLAN +LETA+R GDV
Sbjct:  260 LMVSVADYLQDKGELEKAVQLYQKAGEVTKALDLCFRSGAAGGEADQKHGGEGEGEKSPAMFEALKSMMDDLGSHASPQVLSRCVEFFVANGQFDKAVGLCITNRKHLQAIELCVAHKVPISEDMAEELTPKKDGGESSNSGGXXXXXGRMGKSKGGMAEGTREDVLRELAKACKRQGNFHLACKKYTQAGDRLKALKCLLKSGDTKSIVYYAGVSRSRDIYILAANYLQNLDWHDDPQVMKSIIAFYTKAKAHLQLSDFYDACAQVEIDEYRDYEKALGAMNEAARQLAKAGSPGDKLAQLNKRVFLVERFVQARRLAKDDPDGMAAMCQQLLANDDLETAMRAGDV 607
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BLAST of mRNA_H-elongata_contig4664.11763.1 vs. uniprot
Match: D8LH96_ECTSI (Intraflagellar transport protein 140 puative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH96_ECTSI)

HSP 1 Score: 455 bits (1170), Expect = 1.670e-144
Identity = 239/349 (68.48%), Postives = 275/349 (78.80%), Query Frame = 1 
Query:    1 LMISVAEHFEEKGELEKAVQLFQXXXXXXXXXXLCFKAV----EEKDGDGRDGGGEPRSSMFEALKAMTEDLGTTASPEVVTRCVDFFVDNGHFDKAVGLCITKHRYLRAIELCVEHKVPISEEMAEKLTPA--GG---------------GENKDVNFTEDTREDVLEALAKACKRQGKFQLACKKYTQAGDRLKAMKCLLKGGDTKSVVYYAGVSRTRDIYILAANYLQNLDWHNDPQVMKSIITFYTKAKAQKQLANFYDACAEVEIDEYRDYDKALGALNEAVKQLNKAGLTGDKLVQLNKRVFLVERFVQARRLAKDDPIGMVAICQQLLANKELETAVRVGDV 984
            LM+SVA++ ++KGELEKAVQL+Q          LCF++     E     G +G GE   +MFEALK+M +DLG+ ASP+V++RCV+FFV NG FDKAVGLCIT  ++L+AIELCV HKVPISE+MAE+LTP   GG               GE+K     E TREDVL  LAKACKRQG F LACKKYTQAGDRLKA+KCLLK GDTKS+VYYAGVSR+RDIYILAANYLQNLDWH+DPQVMKSII FYTKAKA  QL++FYDACA+VEIDEYRDY+KALGA+NEA +QL KAG  GDKL QLNKRVFLVERFVQARRLAKDDP GM A+CQQLLAN +LETA+R GDV
Sbjct: 1209 LMVSVADYLQDKGELEKAVQLYQKAGEVTKALDLCFRSGAASGEADQKHGGEGEGERSPAMFEALKSMMDDLGSHASPQVLSRCVEFFVANGQFDKAVGLCITNRKHLQAIELCVAHKVPISEDMAEELTPKKDGGESGNSXXXXXXXXXMGESKG-GMAEGTREDVLRELAKACKRQGNFHLACKKYTQAGDRLKALKCLLKSGDTKSIVYYAGVSRSRDIYILAANYLQNLDWHDDPQVMKSIIAFYTKAKAHLQLSDFYDACAQVEIDEYRDYEKALGAMNEAARQLAKAGPAGDKLAQLNKRVFLVERFVQARRLAKDDPDGMAAMCQQLLANDDLETAMRAGDV 1556
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BLAST of mRNA_H-elongata_contig4664.11763.1 vs. uniprot
Match: A0A7S3Y5S0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y5S0_HETAK)

HSP 1 Score: 344 bits (883), Expect = 1.660e-110
Identity = 186/329 (56.53%), Postives = 235/329 (71.43%), Query Frame = 1 
Query:    7 ISVAEHFEEKGELEKAVQLFQXXXXXXXXXXLCFKAVEEKDGDGRDGGGEPRSSMFEALKAMTEDLGTTASPEVVTRCVDFFVDNGHFDKAVGLCITKHRYLRAIELCVEHKVPISEEMAEKLTPAGGGENKDVNFTEDTREDVLEALAKACKRQGKFQLACKKYTQAGDRLKAMKCLLKGGDTKSVVYYAGVSRTRDIYILAANYLQNLDWHNDPQVMKSIITFYTKAKAQKQLANFYDACAEVEIDEYRDYDKALGALNEAVKQL--NKAGLTG--DKLVQLNKRVFLVERFVQARRLAKDDPIGMVAICQQLLANKELETAVRVGD 981
            + VA +FE KGE EKAV+L+Q          LCFKA           G E R  +F+AL+ + E LG   SP+V+ RC +FF+++  F+KAV L     RYL+A+ELCV+HK+ I+EEMAE+LTP     +KD    +  R++VL ALA+ACKRQG   LACKKYTQAG+RLKA+KCLLK GDTKS+ YYA VSR R+IYILAANYLQ+LDWHN    MK+II FYTKAKA +QL++FYDACA+VEIDEYRDY+KA GAL EA K L  +K+G  G  ++L  L +R+ LVE+FV+ARRLAK  P+ MV +C +LLA   +E AVRVGD
Sbjct:  253 VDVARYFELKGEYEKAVELYQKGGDAPKALDLCFKA-----------GAEGRKGVFDALRQIAEGLGEETSPQVLARCAEFFLEHQQFEKAVALYRKGRRYLQAVELCVQHKLKITEEMAEELTP-----DKD----DPGRKEVLCALARACKRQGGHHLACKKYTQAGERLKALKCLLKSGDTKSITYYANVSRNREIYILAANYLQSLDWHNQAATMKNIIQFYTKAKAYEQLSSFYDACAQVEIDEYRDYEKAAGALAEAAKHLAKDKSGGPGREERLAALRQRIRLVEQFVKARRLAKTQPLEMVELCTELLAEPGVEAAVRVGD 561
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BLAST of mRNA_H-elongata_contig4664.11763.1 vs. uniprot
Match: A0A7S2CPX6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CPX6_9STRA)

HSP 1 Score: 341 bits (874), Expect = 3.690e-107
Identity = 180/335 (53.73%), Postives = 231/335 (68.96%), Query Frame = 1 
Query:    1 LMISVAEHFEEKGELEKAVQLFQXXXXXXXXXXLCFKAVEEKDGDGRDGGGEPRSSMFEALKAMTEDLGTTASPEVVTRCVDFFVDNGHFDKAVGLCITKHRYLRAIELCVEHKVPISEEMAEKLTPAG-----GGENKDVNFTEDTREDVLEALAKACKRQGKFQLACKKYTQAGDRLKAMKCLLKGGDTKSVVYYAGVSRTRDIYILAANYLQNLDWHNDPQVMKSIITFYTKAKAQKQLANFYDACAEVEIDEYRDYDKALGALNEAVKQLNKAGLTGDK---LVQLNKRVFLVERFVQARRLAKDDPIGMVAICQQLLANKELETAVRVGD 981
            LM+  A +FE KGE EKAVQL+Q          LCFKA           G + R+SMFE LK +  DL    SP+ V RC +FF+++G F+KAV L +T  RY+RAI+LC++HKV +++EM E LTP       G    D    E+ R + L ALAKACK+QG FQLACKK+TQAGDR+KAMKCLLK GDTK++ YYA VSR R+IY+LAANYLQ+LDW NDP+ MK I+ FYTKAKA +QL+ F+D+ A++EIDEYRDY+KAL AL +A   + KA  T DK   L  L +R++ +E+FV AR  AKDDP  MV IC  LL  +++E+A+RVGD
Sbjct:  513 LMVECAVYFESKGEFEKAVQLYQKGGDIPKALDLCFKA-----------GSQGRTSMFEVLKNIANDLDDQTSPQTVARCAEFFIEHGQFEKAVQLFMTGKRYVRAIDLCMQHKVKLTDEMVEGLTPPKETPPEGTSAADAAAMEEERLETLRALAKACKKQGAFQLACKKFTQAGDRVKAMKCLLKSGDTKNITYYANVSRNREIYVLAANYLQSLDWQNDPKTMKDIVLFYTKAKAWEQLSTFFDSYAQMEIDEYRDYEKALEALKKAATYMVKAR-TPDKEHLLANLQQRIYHIEQFVTARLNAKDDPAAMVRICHALLEQQDVESALRVGD 835
[Close]
BLAST of mRNA_H-elongata_contig4664.11763.1 vs. uniprot
Match: A0A1Z9KPZ9_9SYNE (Uncharacterized protein n=1 Tax=Synechococcus sp. TMED187 TaxID=1986595 RepID=A0A1Z9KPZ9_9SYNE)

HSP 1 Score: 320 bits (819), Expect = 8.320e-103
Identity = 167/330 (50.61%), Postives = 217/330 (65.76%), Query Frame = 1 
Query:    1 LMISVAEHFEEKGELEKAVQLFQXXXXXXXXXXLCFKAVEEKDGDGRDGGGEPRSSMFEALKAMTEDLGTTASPEVVTRCVDFFVDNGHFDKAVGLCITKHRYLRAIELCVEHKVPISEEMAEKLTPAGGGENKDVNFTEDTREDVLEALAKACKRQGKFQLACKKYTQAGDRLKAMKCLLKGGDTKSVVYYAGVSRTRDIYILAANYLQNLDWHNDPQVMKSIITFYTKAKAQKQLANFYDACAEVEIDEYRDYDKALGALNEAVKQLNKAGLTG--DKLVQLNKRVFLVERFVQARRLAKDDPIGMVAICQQLLANKELETAVRVGDV 984
            + I  AE+ E +G  EKAV LFQ          LCF                 RS +F+AL+ + + L     P+++  C +FF+D+G + K V L      Y +A++LCV H + ++E+ AE+L P  G    +   T D R  VL  +AK CKRQG F LACKKYTQAGD+LKAMKCLLK GDT+ + Y+AGVSRTR+IYILAANYLQ+LDWH+D  VMK+I+ FYTKAKA +QLA+FYDACA+VEIDEYRDY+KALGAL EA + + KA + G  DKL  L +R+  VE FV AR++ K  P  MVA+C  LL   ++E+A+RVGDV
Sbjct:  153 IQIEAAEYLEARGMPEKAVLLFQKGGNLSRAVELCF-----------------RSRLFDALREIADALTAETDPQLLQSCAEFFLDHGQYAKTVHLFAVAGEYTKALDLCVLHNIELTEDTAEQLCPPLGAPGAE---TADARNAVLSKIAKCCKRQGNFHLACKKYTQAGDKLKAMKCLLKSGDTQKICYFAGVSRTREIYILAANYLQSLDWHSDAGVMKNIVAFYTKAKAMEQLASFYDACAQVEIDEYRDYEKALGALKEAHEYMTKARVQGREDKLASLQQRIVHVEAFVNARKMVKSSPEQMVAMCHDLLEQADIESAIRVGDV 462
[Close]
BLAST of mRNA_H-elongata_contig4664.11763.1 vs. uniprot
Match: A0A7S2RUZ9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RUZ9_9STRA)

HSP 1 Score: 333 bits (855), Expect = 2.640e-101
Identity = 177/345 (51.30%), Postives = 236/345 (68.41%), Query Frame = 1 
Query:    1 LMISVAEHFEEKGELEKAVQLFQXXXXXXXXXXLCFKAVEEKDGDGRDGGGEPRSSMFEALKAMTEDLGTTASPEVVTRCVDFFVDNGHFDKAVGLCITKHRYLRAIELCVEHKVPISEEMAEKLTP-----AGGGENKDVNFTE----------DTREDVLEALAKACKRQGKFQLACKKYTQAGDRLKAMKCLLKGGDTKSVVYYAGVSRTRDIYILAANYLQNLDWHNDPQVMKSIITFYTKAKAQKQLANFYDACAEVEIDEYRDYDKALGALNEAVKQLNKAGLTGDK---LVQLNKRVFLVERFVQARRLAKDDPIGMVAICQQLLANKELETAVRVGD 981
            LMI  A+HFE KG+LEKAVQL+Q          LCF+A           GG+ RSSMF+ L+ +  +L    +P+ V RC +FF+++G F+KAV L +T  RY+RAI+L V+HKV I++EMAE +TP     A  G+   ++  E          D R +VL ALA+ACK+QG FQLACKK+TQAGDR+KAMKCLLK GDTK++ YYA VSR  +IYILAANYLQ+LDW NDP  MK+I+ FYTKAKA +QL++F+DA A++EIDEYRDY+KAL AL +A + ++K+  +GD+     Q  +R++ +++FV AR  AKDD   MV IC  LL    +E A+RVGD
Sbjct:  904 LMIDCAQHFESKGDLEKAVQLYQKGGDIPKALDLCFRA-----------GGQGRSSMFDVLQTIAGELDENTNPQTVARCAEFFMEHGQFEKAVQLFVTGKRYIRAIDLAVQHKVKITDEMAEGMTPPKNAKAPSGQAASLHLGESKSDMDEVPGDFRVEVLRALARACKKQGSFQLACKKFTQAGDRVKAMKCLLKSGDTKNITYYATVSRNPEIYILAANYLQSLDWQNDPDTMKNIVVFYTKAKAFEQLSSFFDAYAQMEIDEYRDYEKALNALQKASEYISKSR-SGDRERQQAQFQQRIYHIQQFVTARNAAKDDASSMVRICHALLEQPNVEAAIRVGD 1236
[Close]
BLAST of mRNA_H-elongata_contig4664.11763.1 vs. uniprot
Match: A0A835YKN9_9STRA (Putative intraflagellar transport protein 140 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKN9_9STRA)

HSP 1 Score: 332 bits (850), Expect = 4.930e-100
Identity = 171/332 (51.51%), Postives = 236/332 (71.08%), Query Frame = 1 
Query:    1 LMISVAEHFEEKGELEKAVQLFQXXXXXXXXXXLCFKAVEEKDGDGRDGGGEPRSSMFEALKAMTEDLGTTA---SPEVVTRCVDFFVDNGHFDKAVGLCITKHRYLRAIELCVEHKVPISEEMAEKLTPAGGGENKDVNFTEDTREDVLEALAKACKRQGKFQLACKKYTQAGDRLKAMKCLLKGGDTKSVVYYAGVSRTRDIYILAANYLQNLDWHNDPQVMKSIITFYTKAKAQKQLANFYDACAEVEIDEYRDYDKALGALNEAVKQLNKAGL--TGDKLVQLNKRVFLVERFVQARRLAKDDPIGMVAICQQLLANKELETAVRVGD 981
            LM+  A++FE+KGEL+KAVQL+           +CFKA           G + ++ MFE L+A+TE+LG  +   +P+V+ +C  FF+++G  +KAV L I+  +Y +A++LC   KV I+EEMAE +TP+    +         R  +L+ LA+ CKRQG + LACKKYTQAG+RLKAMKCLLK GDTKS++YYA V R+RD+Y+LAANYLQNLDWH+D +VM+SI++FYTKAKA +QL+ FY+ACA+VEIDEYR+Y+KALGAL+EA + L+KA    +   L  L++RV LV++FV ARR+A DDP  M+ IC +LL   +L+ AVR GD
Sbjct: 1082 LMVDAAQYFEDKGELDKAVQLYHKGGDVAHALEICFKA-----------GADGQTGMFELLRAITEELGQASGSTNPQVLVQCAQFFLEHGQAEKAVSLYISSKQYRQALDLCATAKVKITEEMAESITPSKDAVD---------RTQLLQELAQCCKRQGSYHLACKKYTQAGERLKAMKCLLKTGDTKSIIYYASVGRSRDMYVLAANYLQNLDWHSDAEVMRSIVSFYTKAKAMEQLSGFYEACAQVEIDEYRNYEKALGALHEAQQCLSKANTPSSASALSALHQRVQLVQQFVAARRMALDDPPEMLRICHRLLEEPQLDAAVRTGD 1393
[Close]
BLAST of mRNA_H-elongata_contig4664.11763.1 vs. uniprot
Match: A0A7S2BSR4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BSR4_9STRA)

HSP 1 Score: 314 bits (805), Expect = 1.030e-98
Identity = 163/329 (49.54%), Postives = 224/329 (68.09%), Query Frame = 1 
Query:    1 LMISVAEHFEEKGELEKAVQLFQXXXXXXXXXXLCFKAVEEKDGDGRDGGGEPRSSMFEALKAMTEDLGTTASPEVVTRCVDFFVDNGHFDKAVGLCITKHRYLRAIELCVEHKVPISEEMAEKLTPAGGGENKDVNFTEDTREDVLEALAKACKRQGKFQLACKKYTQAGDRLKAMKCLLKGGDTKSVVYYAGVSRTRDIYILAANYLQNLDWHNDPQVMKSIITFYTKAKAQKQLANFYDACAEVEIDEYRDYDKALGALNEAVKQLNK--AGLTGDKLVQLNKRVFLVERFVQARRLAKDDPIGMVAICQQLLANKELETAVRVGD 981
            LM+  A H E KGE EKAVQL+Q          LCFKA           G + R++MF+ALK M  +L    SP+ + RC +FF+++G F+KAV L IT  +Y RAI+LC+ +KV ++EE+A+ LTP   G         + R++VL +LA+ACK+QG FQLA KK+T+AGDR+KAMK LLK GDTK++VYY  +SR ++IY+LAANYLQ+LDW ND   MK+I+ FYTKAK+ + L++F+DA A++EIDEYRDY+KALGAL +A +  +K  A      L  L +R++ +E+FV AR  AKDD   MV IC  LL   ++E+++RVGD
Sbjct:  287 LMVKCAAHLEAKGEYEKAVQLYQKGGDIPKALDLCFKA-----------GSQGRTTMFDALKNMANELDEHTSPQTIARCAEFFIEHGQFNKAVQLLITGKKYNRAIDLCLTNKVKLTEELAKSLTPPKEG------LATEERQEVLRSLARACKKQGSFQLAAKKFTEAGDRVKAMKALLKSGDTKNIVYYTTMSRNKEIYVLAANYLQSLDWQNDTSTMKNIVLFYTKAKSWESLSSFFDAYAQMEIDEYRDYEKALGALKKAAEYTSKSRAPEKAQILGNLQQRIYHMEQFVTARLAAKDDTATMVRICHSLLEQPDVESSIRVGD 598
[Close]
BLAST of mRNA_H-elongata_contig4664.11763.1 vs. uniprot
Match: A0A7S3EZ43_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3EZ43_9EUKA)

HSP 1 Score: 300 bits (769), Expect = 1.220e-96
Identity = 156/330 (47.27%), Postives = 213/330 (64.55%), Query Frame = 1 
Query:    1 LMISVAEHFEEKGELEKAVQLFQXXXXXXXXXXLCFKAVEEKDGDGRDGGGEPRSSMFEALKAMTEDLGTTASPEVVTRCVDFFVDNGHFDKAVGLCITKHRYLRAIELCVEHKVPISEEMAEKLTPAGGGENKDVNFTEDTREDVLEALAKACKRQGKFQLACKKYTQAGDRLKAMKCLLKGGDTKSVVYYAGVSRTRDIYILAANYLQNLDWHNDPQVMKSIITFYTKAKAQKQLANFYDACAEVEIDEYRDYDKALGALNEAVKQLNKAGLTG--DKLVQLNKRVFLVERFVQARRLAKDDPIGMVAICQQLLANKELETAVRVGDV 984
            LMI  A +FEE+    KAV L+Q          LCF+A                  +F+AL+ + E L +   P+++ RC +FF+D+G ++K V L      Y +A++LC  H +P+SEEMAE++ PA G +  +   TE+ R  +L  + K CKRQG + LACKKYTQAGD++KAMKCLLK GDT+ V+++AGVSRTRDIYILAANYLQ LDWH++P+++K+I+ FY+KAKA        DA A+VEIDEYRDY+KAL AL E++  L KA   G   K+ QL +R+  VE FV AR++ K DP  M+  C  LL   ++E A+RVGDV
Sbjct:   16 LMIEAAAYFEERNMPAKAVALYQKGGNLAKAVDLCFRA-----------------RLFDALRDIAETLDSKTDPQLLHRCAEFFLDHGQYEKTVHLFTVAGEYAKALDLCALHNIPLSEEMAERMLPALGDKGAE---TEELRAGLLAKVGKICKRQGNYTLACKKYTQAGDKVKAMKCLLKSGDTEKVIFFAGVSRTRDIYILAANYLQTLDWHSEPEILKNIVGFYSKAKAXXXXXXXXDASAQVEIDEYRDYEKALVALKESLTWLGKARAPGKEQKIAQLEQRIRHVEAFVAARKMVKSDPQQMIKTCHDLLEEADVEAAIRVGDV 325
[Close]
BLAST of mRNA_H-elongata_contig4664.11763.1 vs. uniprot
Match: A0A7S2PI29_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2PI29_9DINO)

HSP 1 Score: 303 bits (776), Expect = 1.480e-96
Identity = 154/331 (46.53%), Postives = 221/331 (66.77%), Query Frame = 1 
Query:    4 MISVAEHFEEKGELEKAVQLFQXXXXXXXXXXLCFKAVEEKDGDGRDGGGEPRSSMFEALKAMTEDLGTTASPEVVTRCVDFFVDNGHFDKAVGLCITKHRYLRAIELCVEHKVPISEEMAEKLTPAGGGENKDVNFTEDTREDVLEALAKACKRQGKFQLACKKYTQAGDRLKAMKCLLKGGDTKSVVYYAGVSRTRDIYILAANYLQNLDWHNDPQVMKSIITFYTKAKAQKQLANFYDACAEVEIDEYRDYDKALGALNEAVKQLNKA---GLTGDKLVQ-LNKRVFLVERFVQARRLAKDDPIGMVAICQQLLANKELETAVRVGDV 984
            M   A+++E++G+  KAV L+           +CF+A                  +F+AL+ + +DL   + PE + +C +FF+ +   DKAV L    H+Y RA++LCVEH V I+E+MAE++TP    EN+ +      R D+L+ +A  CK+QG FQLACKK+TQAGD+LKAMK LL+ GDT+ ++++AG +R  DIY+LA NYLQ+LDWHND ++M+SII FY+KAKA ++LA+FYDACA+VEIDEYRDY+KA GAL EA+K L KA       D  VQ L KR+ LV+ F   R+LA  DP  MV +C++++   ++E+AVR+GD+
Sbjct:  119 MAQAAKYYEQRGQPSKAVVLYIKAGHQKRALEICFQA-----------------RLFDALRKIADDLSADSDPEDLAKCAEFFMQHSQHDKAVHLLSMSHQYERAVDLCVEHDVHITEDMAERMTPEKNSENQAL------RADILQRMATLCKKQGSFQLACKKFTQAGDKLKAMKSLLQSGDTEKIIFFAGTARQPDIYVLAGNYLQSLDWHNDQEIMRSIIQFYSKAKAHEKLASFYDACAQVEIDEYRDYEKAGGALREAMKYLLKAVGVAAENDPRVQSLQKRIGLVDNFAGVRKLAATDPAEMVKVCEEMVQLPDIESAVRIGDI 426
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig4664.11763.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KPV7_9PHAE2.440e-15368.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LH96_ECTSI1.670e-14468.48Intraflagellar transport protein 140 puative n=1 T... [more]
A0A7S3Y5S0_HETAK1.660e-11056.53Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2CPX6_9STRA3.690e-10753.73Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A1Z9KPZ9_9SYNE8.320e-10350.61Uncharacterized protein n=1 Tax=Synechococcus sp. ... [more]
A0A7S2RUZ9_9STRA2.640e-10151.30Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A835YKN9_9STRA4.930e-10051.51Putative intraflagellar transport protein 140 n=1 ... [more]
A0A7S2BSR4_9STRA1.030e-9849.54Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3EZ43_9EUKA1.220e-9647.27Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A7S2PI29_9DINO1.480e-9646.53Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig4664contigH-elongata_contig4664:7121..9841 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score458.0
Seed ortholog evalue3.7e-126
Seed eggNOG ortholog2880.D8LH96
Preferred nameIFT140
KEGG koko:K19672
GOsGO:0001501,GO:0001654,GO:0001655,GO:0001750,GO:0002119,GO:0002164,GO:0003002,GO:0003008,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0005929,GO:0005930,GO:0006810,GO:0006928,GO:0006950,GO:0006970,GO:0006972,GO:0006979,GO:0006996,GO:0007017,GO:0007018,GO:0007275,GO:0007368,GO:0007389,GO:0007399,GO:0007423,GO:0007507,GO:0007568,GO:0007600,GO:0007605,GO:0008104,GO:0008150,GO:0008340,GO:0008589,GO:0009266,GO:0009408,GO:0009628,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009966,GO:0009987,GO:0010259,GO:0010638,GO:0010646,GO:0010970,GO:0015630,GO:0016043,GO:0021532,GO:0021915,GO:0022008,GO:0022607,GO:0022611,GO:0023051,GO:0030030,GO:0030031,GO:0030154,GO:0030182,GO:0030326,GO:0030705,GO:0030990,GO:0030991,GO:0031076,GO:0031344,GO:0031346,GO:0031503,GO:0032386,GO:0032388,GO:0032391,GO:0032501,GO:0032502,GO:0032838,GO:0032879,GO:0032886,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0034613,GO:0035107,GO:0035108,GO:0035113,GO:0035295,GO:0035721,GO:0035735,GO:0035845,GO:0035869,GO:0036064,GO:0040024,GO:0042073,GO:0042461,GO:0042733,GO:0042995,GO:0043005,GO:0043009,GO:0043010,GO:0043053,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044087,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0046530,GO:0046907,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048562,GO:0048568,GO:0048583,GO:0048598,GO:0048666,GO:0048699,GO:0048701,GO:0048704,GO:0048705,GO:0048706,GO:0048731,GO:0048736,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050877,GO:0050896,GO:0050954,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051270,GO:0051272,GO:0051641,GO:0051649,GO:0055115,GO:0060041,GO:0060173,GO:0060271,GO:0060341,GO:0060429,GO:0060491,GO:0060632,GO:0061512,GO:0065007,GO:0070727,GO:0070925,GO:0071840,GO:0072001,GO:0072359,GO:0097014,GO:0097458,GO:0097542,GO:0097730,GO:0097731,GO:0097733,GO:0099111,GO:0099568,GO:0120025,GO:0120031,GO:0120032,GO:0120035,GO:0120036,GO:0120038,GO:1902017,GO:1902115,GO:1904888,GO:1905515,GO:1905796,GO:1905798,GO:1905799,GO:1905801,GO:1990403
EggNOG free text desc.intraciliary retrograde transport
EggNOG OGsKOG3617@1,KOG3617@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Exons8
Model size984
Cds size981
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930771.898394-UTR-H-elongata_contig4664:7120..71231622930771.898394-UTR-H-elongata_contig4664:7120..7123Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4664 7121..7123 +
1691679563.1070027-UTR-H-elongata_contig4664:7120..71231691679563.1070027-UTR-H-elongata_contig4664:7120..7123Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4664 7121..7123 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930771.9151838-CDS-H-elongata_contig4664:7123..73451622930771.9151838-CDS-H-elongata_contig4664:7123..7345Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4664 7124..7345 +
1691679563.1184149-CDS-H-elongata_contig4664:7123..73451691679563.1184149-CDS-H-elongata_contig4664:7123..7345Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4664 7124..7345 +
1622930771.9326468-CDS-H-elongata_contig4664:7925..80421622930771.9326468-CDS-H-elongata_contig4664:7925..8042Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4664 7926..8042 +
1691679563.1288555-CDS-H-elongata_contig4664:7925..80421691679563.1288555-CDS-H-elongata_contig4664:7925..8042Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4664 7926..8042 +
1622930771.950135-CDS-H-elongata_contig4664:8249..82911622930771.950135-CDS-H-elongata_contig4664:8249..8291Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4664 8250..8291 +
1691679563.1363325-CDS-H-elongata_contig4664:8249..82911691679563.1363325-CDS-H-elongata_contig4664:8249..8291Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4664 8250..8291 +
1622930771.967406-CDS-H-elongata_contig4664:8354..84771622930771.967406-CDS-H-elongata_contig4664:8354..8477Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4664 8355..8477 +
1691679563.1439075-CDS-H-elongata_contig4664:8354..84771691679563.1439075-CDS-H-elongata_contig4664:8354..8477Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4664 8355..8477 +
1622930771.9843318-CDS-H-elongata_contig4664:8636..87861622930771.9843318-CDS-H-elongata_contig4664:8636..8786Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4664 8637..8786 +
1691679563.1513996-CDS-H-elongata_contig4664:8636..87861691679563.1513996-CDS-H-elongata_contig4664:8636..8786Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4664 8637..8786 +
1622930772.0011585-CDS-H-elongata_contig4664:9077..91581622930772.0011585-CDS-H-elongata_contig4664:9077..9158Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4664 9078..9158 +
1691679563.1589425-CDS-H-elongata_contig4664:9077..91581691679563.1589425-CDS-H-elongata_contig4664:9077..9158Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4664 9078..9158 +
1622930772.0163956-CDS-H-elongata_contig4664:9337..94711622930772.0163956-CDS-H-elongata_contig4664:9337..9471Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4664 9338..9471 +
1691679563.1690688-CDS-H-elongata_contig4664:9337..94711691679563.1690688-CDS-H-elongata_contig4664:9337..9471Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4664 9338..9471 +
1622930772.033383-CDS-H-elongata_contig4664:9729..98411622930772.033383-CDS-H-elongata_contig4664:9729..9841Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4664 9730..9841 +
1691679563.1805277-CDS-H-elongata_contig4664:9729..98411691679563.1805277-CDS-H-elongata_contig4664:9729..9841Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4664 9730..9841 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig4664.11763.1prot_H-elongata_contig4664.11763.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig4664 7124..9841 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig4664.11763.1

>prot_H-elongata_contig4664.11763.1 ID=prot_H-elongata_contig4664.11763.1|Name=mRNA_H-elongata_contig4664.11763.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=327bp
MISVAEHFEEKGELEKAVQLFQKAGEINRALRLCFKAVEEKDGDGRDGGG
EPRSSMFEALKAMTEDLGTTASPEVVTRCVDFFVDNGHFDKAVGLCITKH
RYLRAIELCVEHKVPISEEMAEKLTPAGGGENKDVNFTEDTREDVLEALA
KACKRQGKFQLACKKYTQAGDRLKAMKCLLKGGDTKSVVYYAGVSRTRDI
YILAANYLQNLDWHNDPQVMKSIITFYTKAKAQKQLANFYDACAEVEIDE
YRDYDKALGALNEAVKQLNKAGLTGDKLVQLNKRVFLVERFVQARRLAKD
DPIGMVAICQQLLANKELETAVRVGDV
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mRNA from alignment at H-elongata_contig4664:7121..9841+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig4664.11763.1 ID=mRNA_H-elongata_contig4664.11763.1|Name=mRNA_H-elongata_contig4664.11763.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2721bp|location=Sequence derived from alignment at H-elongata_contig4664:7121..9841+ (Himanthalia elongata Himel1 dioecious)
TTGATGATTTCTGTGGCCGAGCACTTCGAGGAGAAGGGTGAACTCGAAAA
GGCGGTGCAGCTGTTCCAAAAGGCTGGAGAGATTAACAGGGCCTTGCGGC
TGTGCTTCAAGGCCGTAGAAGAAAAGGATGGTGATGGGAGAGACGGGGGT
GGGGAACCACGATCATCAATGTTCGAAGCCCTGAAAGCAATGACGGAAGA
CCTGGGGACGACTGCTTCTCCAGAGGTCGAGTGGCTGGGAAAGCATAGAT
AGTGTTTGCCGCCCAAATGACCTGCTGTGAAACCACACGCATAGCGCTCG
CCACCATTTCTAAATTTCGAGCCTGACTGCCTTCCCACGGTGGGCAGTGT
TACTTGCTTGCGCAAGCGACAACGGTATTATGATGAAAAAACATATGATG
AACTCATTTCAACCTTCATAGCACCATGAGAGGTGTAGTCTAGGGAACCA
ACTATTGTTTGATTTTGTTCGTATGTGTTCTCGTTTGCTACCCTTGTATA
TGGAGCGGCACCGCCGCTCTAGATGGCGTTACTTGAGGAATCCACTTGCT
AACTTTCCGAGGAGTAGAGGAGTGGAAAATTTACCGCTTAGACCAACCAA
CGGTGTATGACCTTGGTGGCGGATTTCCTACTTTAGTAGCGTTATATATA
CTAGATATCTCTGAAAAGCGATCGCAACATGACCTATAGCCGCAGGATTC
ATTGAAATATCCCTCGTGCCCGCAGCAGCATCGTCGGTGCCAAAAAATAT
TTTAGGGCACCTCGGAGAAACGTGAACCACGTATTCCCTCGTATCACGGA
ATCAGGTGGTCACGCGCTGCGTGGATTTCTTCGTTGACAACGGCCACTTC
GACAAGGCAGTCGGTCTCTGCATCACCAAACACCGATACCTACGCGCCAT
TGAGTTGTGCGTGGAACACAAGGTGACTTGGAACATCCTCGCGACCTTTC
ATTAAAACACTGATCCCATAAACGTTCTAAATTCCTCTTCCAAGCGATGC
ACCATCAAACGAGTGAAGCGCGGCACAAAAACCGTCTGCGTGGTACTGAA
TAAACAACTGGGCGATGCGTGCGAAGAGTACCAATCTTGAAGTCACCACG
CATATCGTTCAATCTCGACGTTCGCGCAGGTGCCTATATCGGAAGAGATG
GCTGAAAAGCTGACACCGGCGGTAAAACAACAAGGCAACAACATTGAGGG
GGAGGAAGGTGGCAGTAATAGGTGGTCAGGCGAGGGTGGTGGCGAGAATA
AGGACGTAAACTTTACTGAAGACACCAGGGAAGACGTGTTGGAGGCACTC
GCAAAGGCGTGCAAGCGTCAGGGAAAATTTCAACTTGCTTGCAAGAAGTA
CACGCAGGTGATGGCGCTAACCGATTTCGCTGCGACCAGTCCTTCACGCG
CCGCACGGTGCCTTAAGAACACGCAAAAATCGTTATGGGTTGCAATTTGA
AAGCCTACTGCGACACCTTCCTTTGGAATACTACATGTCTCTTTTATAAT
AATTGTCCCCTATAAGGCCGGCGATCGACTCAAGGCAATGAAGTGCTTGC
TTAAGGGCGGAGACACGAAGAGTGTCGTATATTATGCTGGAGTGAGCCGC
ACCCGAGACATCTATATTCTGGCTGCAAACTATTTGCAGAACTTGGACTG
GCACAATGATCCACAGGTTAGGTGGATTCTAATGAAAGGACAGGAATCGT
TAGATTCTACGAACTAGTTTCCTGGCCTGGGTGATACTAGTCGACCAGGG
CCCCTAGGGTTAAAAGTGCCGTAAGCGATGATATCCTACTCCGCGTGTTC
TTATTCGTGAATTATCTTGGCTCGCCAACCCGGCGCGGAAGAAATGTACT
AGCATTCTTGATACCGAGCGCAACATTCCGATGAGCTTGGTGGGCCAACC
TCTCGTTTTTTAGCTTGACTTGCGAACGGATTCCGCGTGCCCTCTCGTCG
CCGCAAGGTTATGAAGTCAATAATCACATTTTACACCAAGGCAAAGGCAC
AAAAACAACTGGCCAACTTCTACGATGCATGTGCCGAGGTGCGTTCAGTA
GTGTTCAGAATTCTTTGAGCGCATGATGCGAGAAGTTTCGTAGGAGGCGT
CCCACAATTTGACTTTTTTCCGCTCGGCAAATGCTCTTCGCTTTCCTCGA
GTCACAGTCGCGATTTCATCAGGCTAAATACCACGCGATCGGGCACATTC
CATGCGCGTGATGACAGGTTGAGATAGACGAGTATCGCGATTACGATAAG
GCGCTGGGCGCTCTGAACGAGGCCGTGAAACAGCTGAACAAAGCTGGCCT
CACGGGAGACAAGTTGGTACAGCTCAACAAGAGGGTGTTCCTCGTGGAGA
GGTGGACATATAGCTTTAATACATTCGAACAAAAGGAGGGGTTTCTTGAA
CAACGATCCATCTGGTTGTACGGAGGCATATGGCTGCGTTTGTCAGCATC
TTTAGATTTTCGTGTGAGCAATCAGAGAGAAAGCTCTAGATATCAACACT
ATTGCTTGAAACTTGCTTCGTTTTCGACCGTGCCCGACTCCCCCCTCATC
AAACGCACCATCCAGTACCGCATAGGCCACACGCTTGAATTGTCATGTTG
CTGTGGCAGGTTTGTCCAGGCTCGTCGACTTGCTAAGGACGATCCTATTG
GGATGGTGGCCATATGTCAGCAACTGTTGGCAAACAAGGAACTGGAGACA
GCCGTAAGGGTGGGAGACGTT
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Coding sequence (CDS) from alignment at H-elongata_contig4664:7121..9841+

>mRNA_H-elongata_contig4664.11763.1 ID=mRNA_H-elongata_contig4664.11763.1|Name=mRNA_H-elongata_contig4664.11763.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1962bp|location=Sequence derived from alignment at H-elongata_contig4664:7121..9841+ (Himanthalia elongata Himel1 dioecious)
ATGATTTCTGTGGCCGAGCACTTCGAGGAGAAGGGTGAACTCGAAAAGGC
GGTGCAGCTGTTCCAAAAGGCTGGAGAGATTAACAGGGCCTTGCGGCTGT
GCTTCAAGGCCGTAGAAGAAAAGGATGGTGATGGGAGAGACGGGGGTGGG
GAACCACGATCATCAATGTTCGAAGCCCTGAAAGCAATGACGGAAGACCT
GGGGACGACTGCTTCTCCAGAGATGATTTCTGTGGCCGAGCACTTCGAGG
AGAAGGGTGAACTCGAAAAGGCGGTGCAGCTGTTCCAAAAGGCTGGAGAG
ATTAACAGGGCCTTGCGGCTGTGCTTCAAGGCCGTAGAAGAAAAGGATGG
TGATGGGAGAGACGGGGGTGGGGAACCACGATCATCAATGTTCGAAGCCC
TGAAAGCAATGACGGAAGACCTGGGGACGACTGCTTCTCCAGAGGTGGTC
ACGCGCTGCGTGGATTTCTTCGTTGACAACGGCCACTTCGACAAGGCAGT
CGGTCTCTGCATCACCAAACACCGATACCTACGCGCCATTGAGTTGTGCG
TGGAACACAAGGTGGTCACGCGCTGCGTGGATTTCTTCGTTGACAACGGC
CACTTCGACAAGGCAGTCGGTCTCTGCATCACCAAACACCGATACCTACG
CGCCATTGAGTTGTGCGTGGAACACAAGGTGCCTATATCGGAAGAGATGG
CTGAAAAGCTGACACCGGCGGTGCCTATATCGGAAGAGATGGCTGAAAAG
CTGACACCGGCGGGTGGTGGCGAGAATAAGGACGTAAACTTTACTGAAGA
CACCAGGGAAGACGTGTTGGAGGCACTCGCAAAGGCGTGCAAGCGTCAGG
GAAAATTTCAACTTGCTTGCAAGAAGTACACGCAGGGTGGTGGCGAGAAT
AAGGACGTAAACTTTACTGAAGACACCAGGGAAGACGTGTTGGAGGCACT
CGCAAAGGCGTGCAAGCGTCAGGGAAAATTTCAACTTGCTTGCAAGAAGT
ACACGCAGGCCGGCGATCGACTCAAGGCAATGAAGTGCTTGCTTAAGGGC
GGAGACACGAAGAGTGTCGTATATTATGCTGGAGTGAGCCGCACCCGAGA
CATCTATATTCTGGCTGCAAACTATTTGCAGAACTTGGACTGGCACAATG
ATCCACAGGCCGGCGATCGACTCAAGGCAATGAAGTGCTTGCTTAAGGGC
GGAGACACGAAGAGTGTCGTATATTATGCTGGAGTGAGCCGCACCCGAGA
CATCTATATTCTGGCTGCAAACTATTTGCAGAACTTGGACTGGCACAATG
ATCCACAGGTTATGAAGTCAATAATCACATTTTACACCAAGGCAAAGGCA
CAAAAACAACTGGCCAACTTCTACGATGCATGTGCCGAGGTTATGAAGTC
AATAATCACATTTTACACCAAGGCAAAGGCACAAAAACAACTGGCCAACT
TCTACGATGCATGTGCCGAGGTTGAGATAGACGAGTATCGCGATTACGAT
AAGGCGCTGGGCGCTCTGAACGAGGCCGTGAAACAGCTGAACAAAGCTGG
CCTCACGGGAGACAAGTTGGTACAGCTCAACAAGAGGGTGTTCCTCGTGG
AGAGGTTGAGATAGACGAGTATCGCGATTACGATAAGGCGCTGGGCGCTC
TGAACGAGGCCGTGAAACAGCTGAACAAAGCTGGCCTCACGGGAGACAAG
TTGGTACAGCTCAACAAGAGGGTGTTCCTCGTGGAGAGGTTTGTCCAGGC
TCGTCGACTTGCTAAGGACGATCCTATTGGGATGGTGGCCATATGTCAGC
AACTGTTGGCAAACAAGGAACTGGAGACAGCCGTAAGGGTGGGAGACGTT
GTTTGTCCAGGCTCGTCGACTTGCTAAGGACGATCCTATTGGGATGGTGG
CCATATGTCAGCAACTGTTGGCAAACAAGGAACTGGAGACAGCCGTAAGG
GTGGGAGACGTT
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