mRNA_H-elongata_contig46596.11757.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig46596.11757.1 vs. uniprot
Match: A0A6H5L399_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L399_9PHAE) HSP 1 Score: 396 bits (1017), Expect = 1.050e-131 Identity = 198/246 (80.49%), Postives = 219/246 (89.02%), Query Frame = 3
Query: 189 RVTLLQAGRELVARGGVKELYQGLGVTLVGSMPAVGIYFGLYHFVKKQMDAKENVSPYLSIMVSAGVGNFIASFFRVPYEVVKQRLQVGAYPTTAVALRTIYSQEGLWGFFGKGGIKTQWARDIPYAMVTLLVYETLQKAAARRR-------IFGEASALENMVFGAVAGGMGSLVTNPMDMVKTRMMTSPESYAGPMDAAWTALRKEGPQAFMKGATPRLMHKIPANALFFVVYEFFRTLLGVTR 905
R+TLLQAGR+L+ARGGV ELYQGLGVTLVGSMPAVG+YFGLY FVK QMDAK+ +SPYLSI VSAGVGNFIASFFRVPYEVVKQRLQVG YPTT VA+++IY + GL GFFGKGG+KTQWARDIPYAMVTLLVYETLQKAAARR+ +A+ +ENMV GA+AGGMGSLVTNPMDM+KTRMMTSPE YAGPMDAAW AL KEGPQAF+KGATPRL+HKIPANA FFV YEFFR++LGVTR
Sbjct: 243 RMTLLQAGRDLLARGGVPELYQGLGVTLVGSMPAVGVYFGLYQFVKNQMDAKQGISPYLSITVSAGVGNFIASFFRVPYEVVKQRLQVGQYPTTMVAIQSIYHEGGLVGFFGKGGLKTQWARDIPYAMVTLLVYETLQKAAARRKGPPGTKKKGAKANPIENMVIGAIAGGMGSLVTNPMDMIKTRMMTSPELYAGPMDAAWKALSKEGPQAFLKGATPRLLHKIPANAFFFVAYEFFRSILGVTR 488
BLAST of mRNA_H-elongata_contig46596.11757.1 vs. uniprot
Match: A0A836CPL2_9STRA (Mitochondrial carrier domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPL2_9STRA) HSP 1 Score: 295 bits (754), Expect = 6.640e-95 Identity = 147/244 (60.25%), Postives = 183/244 (75.00%), Query Frame = 3
Query: 183 NERVTLLQAGRELVARGGVKELYQGLGVTLVGSMPAVGIYFGLYHFVKKQMDAKENVSPYLSIMVSAGVGNFIASFFRVPYEVVKQRLQVGAYPTTAVALRTIYSQEGLWGFFGKGGIKTQWARDIPYAMVTLLVYETLQKAAARR---RIFGEASALENMVFGAVAGGMGSLVTNPMDMVKTRMMTSPESYAGPMDAAWTALRKEGPQAFMKGATPRLMHKIPANALFFVVYEFFRTLLGVTR 905
+E + AGR L+ R GV LY GLGV+LVG+MP++GIYFG+Y + + ++D +SP SI +SAG+GNF+ASFFRVPYE+VKQRLQ G YP TA ALR +Y+ G+ FFG+GGI TQ ARD+PYAMVTL+VYE+LQ AA RR R + S LE M+ GA+AGG+G+L TNPMD+VKTRMMT+P YA DAA LR +G +AF +GATPRL+HK+PAN LFF YE FRTLLGV R
Sbjct: 39 SESLNFFTAGRLLLKRNGVGALYSGLGVSLVGAMPSIGIYFGIYQYCRGKLDQSPRLSPLGSIALSAGIGNFVASFFRVPYEIVKQRLQAGVYPDTATALRIMYADGGVGAFFGRGGIATQLARDVPYAMVTLMVYESLQTAARRRAAARGAAKPSHLETMLIGAIAGGVGTLATNPMDVVKTRMMTAPHLYASAWDAAVVTLRADGARAFARGATPRLLHKVPANGLFFAAYELFRTLLGVRR 282
BLAST of mRNA_H-elongata_contig46596.11757.1 vs. uniprot
Match: W7TPC5_9STRA (Mitochondrial carrier n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TPC5_9STRA) HSP 1 Score: 241 bits (615), Expect = 3.830e-72 Identity = 136/253 (53.75%), Postives = 173/253 (68.38%), Query Frame = 3
Query: 198 LLQAGRELVARGGVKELYQGLGVTLVGSMPAVGIYFGLYHFVKKQMDAKENVSP-----YLSIMVSAGVGNFIASFFRVPYEVVKQRLQVGAYPTTAVALRTIYSQEG-LWGFFGKGGIKTQWARDIPYAMVTLLVYETLQKAAARRRIF-GEA--------SALENMVFGAVAGGMGSLVTNPMDMVKTRMMTSPESYAGPMDAAWTALRK----EGPQAFMKGATPRLMHKIPANALFFVVYEFFRTLLGV 899
+L+A ++LV+R GV LY GLGVTLVGS+PAV +YFG+Y VKK + + + P L + SAGVGN +AS FRVPYEVVKQRLQ G Y +T ALRT+Y EG L FFG G+ +Q RD+PYA+VTLL YE++++ A RR+ GE+ +ALE+ V GA+AGG+GSLV+NPMD+VKTR+MT P Y W+A+ K EGP AF KG PRL+HK+PANA+FF YE FR LL V
Sbjct: 177 MLEAAQDLVSRKGVSALYTGLGVTLVGSIPAVSVYFGVYQAVKKAL--LQALPPGLGWSLLGVAASAGVGNTVASIFRVPYEVVKQRLQAGMYVSTGQALRTMYRTEGGLLAFFGTSGVASQILRDVPYAIVTLLTYESMRRTRAERRLGPGESKGGLTKGSTALEDSVMGALAGGVGSLVSNPMDVVKTRVMTQPGLYP----TVWSAVSKVWVEEGPSAFFKGTVPRLLHKVPANAIFFATYEIFRGLLRV 423
BLAST of mRNA_H-elongata_contig46596.11757.1 vs. uniprot
Match: A0A7S1BCN2_9STRA (Hypothetical protein n=3 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BCN2_9STRA) HSP 1 Score: 226 bits (575), Expect = 1.270e-66 Identity = 121/243 (49.79%), Postives = 160/243 (65.84%), Query Frame = 3
Query: 234 GVKELYQGLGVTLVGSMPAVGIYFGLYHFVKKQMDAK-------------------ENVSPYLSIMVSAGVGNFIASFFRVPYEVVKQRLQVGAYPTTAVALRTIYSQEGLWGFFGKGGIKTQWARDIPYAMVTLLVYETLQKAAARRRIF--GEASALENMVFGAVAGGMGSLVTNPMDMVKTRMMTSPESYA-GPMDAAWTALRKEGPQAFMKGATPRLMHKIPANALFFVVYEFFRTLLG 896
G+ +LY GLGVT+VGSMP+VG+YFG+Y + K+++ E S +SA +GN +ASF RVP+EVVKQ+LQ G +P T +ALR++ ++ GL FF GG+ Q ARDIPYA+ TL+ YE +++ R G +SA NMV GA AGG+GS +TNPMD+VKTR+ TSPE Y G + A T L++EGP AF+KG PRLMHKIPANA+FF+ YEFFR +L
Sbjct: 130 GIGQLYAGLGVTVVGSMPSVGLYFGVYSYCKQRIGPALLRKYDLYSKDIGFEGKHWEGTVVVFSQALSAAIGNTVASFSRVPFEVVKQKLQTGVFPNTFIALRSMINEGGLRSFFPVGGVSAQMARDIPYAIFTLVTYEYIKQKWVRPNELKEGASSAWRNMVTGATAGGIGSFLTNPMDVVKTRLQTSPEIYGRGVLQCAMTTLQEEGPAAFLKGMRPRLMHKIPANAVFFLWYEFFRRVLN 372
BLAST of mRNA_H-elongata_contig46596.11757.1 vs. uniprot
Match: A0A7S2V6F4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6F4_9STRA) HSP 1 Score: 223 bits (568), Expect = 3.130e-66 Identity = 122/245 (49.80%), Postives = 158/245 (64.49%), Query Frame = 3
Query: 189 RVTLLQAGRELVARGGVKELYQGLGVTLVGSMPAVGIYFGLYHFVKKQMDAKENVSPYLSIMVSAGVGNFIASFFRVPYEVVKQRLQVGAYPTTAVALRTIYSQEGLWGFFGKGGIKTQWARDIPYAMVTLLVYETLQ---KAAARRRIFGEASALENMVFGAVAGGMGSLVTNPMDMVKTRMMTSPESYAGPMDAAWTA---LRKEGPQAFMKGATPRLMHKIPANALFFVVYEFFRTLLGVTR 905
+V + AG +++ RGG K LY GLGVT+VGS P+ +YFG YH ++ D + +SI+ SAG+GN +AS R PYE+VKQRLQ G YP T AL +I EG+ GFF G+K Q ARDIPYAM+TLLVYETLQ K R + ++ G +AGG+G+ +TNPMD+VKTR+MT+ GP TA L +EG F +GA PRL+H+IPANA+FF YE FR LLG+ R
Sbjct: 93 QVGMFAAGSQVMQRGGFKALYSGLGVTVVGSAPSSAVYFGTYHCCRRWFDGL-GLQKSVSILASAGIGNTVASCLRAPYELVKQRLQYGMYPNTWTALTSIVRDEGVQGFFMSSGLKIQMARDIPYAMMTLLVYETLQDYVKKKHPRLLENGKKVWVDLAIGGIAGGVGTWMTNPMDVVKTRIMTAAVGPQGPPLVTTTANKILAEEGLLGFYRGAVPRLLHRIPANAVFFPFYECFRDLLGIKR 336
BLAST of mRNA_H-elongata_contig46596.11757.1 vs. uniprot
Match: K0R3I4_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R3I4_THAOC) HSP 1 Score: 209 bits (533), Expect = 1.420e-61 Identity = 119/259 (45.95%), Postives = 166/259 (64.09%), Query Frame = 3
Query: 198 LLQAGRELVARGGVKELYQGLGVTLVGSMPAVGIYFGLYHFVKK-------------QMDAKENVSP-----YLSIMVSAGVGNFIASFFRVPYEVVKQRLQVGAYPTTAVALRTIYSQEGLWGFFGKGGIKTQWARDIPYAMVTLLVYETLQKAAARRRIFGEASAL--ENMVFGAVAGGMGSLVTNPMDMVKTRMMTSP----ESYAGPMDAAWTALRKEG-PQAFMKGATPRLMHKIPANALFFVVYEFFRTLLGV 899
L +AGR +V RGGV ELY GL V+ +GSMP+VG+YFG+Y + K+ + D K + +SI SA +GN +ASF RVPYEVVKQ LQ G Y +T A+++++++ GL FF GGI Q ARDIPYA+ TLL YE L++ A +R + + +MV G +GG+GS +TNPMD+VKTR+ T P + +G + A A+ +EG P AF++G+ PRL+HK+PAN+ FF+ YEFF+ LL V
Sbjct: 33 LFEAGRIVVGRGGVGELYAGLAVSALGSMPSVGLYFGVYSYCKRTVGSAFTRCLGSQRQDGKRPLCSDESLRTISIACSAAIGNTVASFSRVPYEVVKQNLQTGKYSSTVTAMQSMWNESGLRAFFPLGGISVQMARDIPYAIFTLLSYEFLREKWALKRSQQDPNGRWWRDMVAGGASGGLGSYLTNPMDVVKTRIQTPPVGDSTACSGSIMACANAVWEEGGPSAFLRGSVPRLLHKVPANSCFFLFYEFFKRLLRV 291
BLAST of mRNA_H-elongata_contig46596.11757.1 vs. uniprot
Match: A0A7S1UWT0_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UWT0_9STRA) HSP 1 Score: 210 bits (534), Expect = 6.240e-60 Identity = 122/260 (46.92%), Postives = 164/260 (63.08%), Query Frame = 3
Query: 165 LSLGA--KNERVTLLQAGRELVAR-GGVKELYQGLGVTLVGSMPAVGIYFGLYHFVKKQMDAK----------ENVSPYLSIMVSAGVGNFIASFFRVPYEVVKQRLQVGAYPTTAVALRTIYSQEGLWGFFGKGGIKTQWARDIPYAMVTLLVYETLQ-KAAARRRIFGEASALENMVFGAVAGGMGSLVTNPMDMVKTRMMTSPESYAGP-MDAAWTALRKEGPQAFMKGATPRLMHKIPANALFFVVYEFFRTLLGV 899
+S GA K +TL QA +V+R GG ELY G+GV +VGSMP+VG+YFG+Y + K+ + + + L+I SA +GN IASF RVPYEV+KQ+LQ G Y T A+ + +G+ GFF GGI Q RDIPYAM TLL YE L+ + + F E+++L + GAVAGG+GS VTNPMD++KTR+ T + Y G M + GP AF++G+ PRL+HK+PAN +FF+ YE FRTLL V
Sbjct: 164 VSTGAPQKAAALTLKQAMDLVVSRPGGFFELYAGVGVAVVGSMPSVGLYFGVYSYCKRLIQPRLVPDDPNNKYRGLLMMLTITTSAAIGNTIASFSRVPYEVMKQKLQTGMYTNTWQAMMELAKHDGIRGFFPMGGIGIQMLRDIPYAMTTLLCYELLKVQFQPWKERFKESTSLVDAFTGAVAGGVGSYVTNPMDVIKTRLQTESQLYGGSIMKCFHDTWMEGGPSAFLRGSVPRLLHKVPANGIFFLFYELFRTLLRV 423
BLAST of mRNA_H-elongata_contig46596.11757.1 vs. uniprot
Match: A0A7S3V944_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V944_9STRA) HSP 1 Score: 207 bits (528), Expect = 1.020e-59 Identity = 119/267 (44.57%), Postives = 166/267 (62.17%), Query Frame = 3
Query: 177 AKNERVTLLQAGRELVAR-GGVKELYQGLGVTLVGSMPAVGIYFGLYHFVKKQM------------DAKENVSPY----LSIMVSAGVGNFIASFFRVPYEVVKQRLQVGAYPTTAVALRTIYSQEGLWGFFGKGGIKTQWARDIPYAMVTLLVYETLQKAAARR---------RIFGEASALENMVFGAVAGGMGSLVTNPMDMVKTRMMTSPESYAGPM-DAAWTALRKEGPQAFMKGATPRLMHKIPANALFFVVYEFFRTLLG 896
A + +TL QA +R GGV ELY GLGV+ +G+MP+VG+YFG+Y + K+++ D + +S L++ SA +GN IASF RVPYEVVKQ+LQ G Y +T AL+ + + GL FF GG+ Q RDIPYA+VTLL YE L+ + + + + ++M+ G VAGGMGS +TNPMD++KTR+ + E Y+G + A L + GP AF++G+ PRL+HK+PANA FFV YEFFR +LG
Sbjct: 110 ASGKALTLKQAANVATSRPGGVLELYAGLGVSAIGAMPSVGLYFGVYSYAKEKIGPFVQNRLGKDEDCVDGLSKAGVRSLTVATSAAIGNTIASFSRVPYEVVKQKLQTGEYSSTFGALKHMCANGGLRSFFPMGGVAIQMYRDIPYAIVTLLTYECLRDHWVNKNEELSLKDGQEAKKVAPWKDMIAGGVAGGMGSFMTNPMDVIKTRLQVNSELYSGNVWVCASRTLEEGGPSAFLRGSVPRLIHKVPANACFFVFYEFFRRVLG 376
BLAST of mRNA_H-elongata_contig46596.11757.1 vs. uniprot
Match: A0A1Z5K4E5_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K4E5_FISSO) HSP 1 Score: 199 bits (507), Expect = 2.420e-57 Identity = 110/241 (45.64%), Postives = 157/241 (65.15%), Query Frame = 3
Query: 192 VTLLQAGRELVAR-GGVKELYQGLGVTLVGSMPAVGIYFGLYHFVKKQMDAKE--NVSPYLSIMVSAGVGNFIASFFRVPYEVVKQRLQVGAYPTTAVALRTIYS-QEGLWGFFGKGGIKTQWARDIPYAMVTLLVYETLQKAAARRRIFGEASALENMVFGAVAGGMGSLVTNPMDMVKTRMMTSPESYAGPMDAAWTALRKEGP-QAFMKGATPRLMHKIPANALFFVVYEFFRTLLGV 899
+T+ +A RE+++R GG Y GLGVT++G+MP+V +YFG+Y + KK + P S+ +SA +GN +ASF RVPYEV+KQ+LQ G Y +T AL+ I S +E + F KGGI Q RD+PYA++TL++YETLQ + R ++ + + G AGG GS TNP D++KTR+ T+ E Y G + + +EG AF++G+ PRL+HK+PANA FF+ YE FR LLGV
Sbjct: 75 LTIWEACREIMSRPGGFWNFYAGLGVTVIGAMPSVALYFGVYSYCKKTLLNSHWGKKHPTASVALSAAIGNSVASFSRVPYEVLKQQLQTGVYTSTWQALKEISSSKEYMSLLFPKGGIAIQMLRDVPYAVITLMLYETLQNTFHKSR----SNKVIDFCVGGAAGGFGSWATNPTDVIKTRLQTNSELYGGSVRTCTAEIWREGGIMAFLRGSVPRLVHKVPANAFFFLFYEGFRQLLGV 311
BLAST of mRNA_H-elongata_contig46596.11757.1 vs. uniprot
Match: A0A7S1Y570_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y570_9STRA) HSP 1 Score: 197 bits (502), Expect = 3.870e-57 Identity = 107/227 (47.14%), Postives = 145/227 (63.88%), Query Frame = 3
Query: 255 GLGVTLVGSMPAVGIYFGLYHFVKKQMDAK----------ENVSPYLSIMVSAGVGNFIASFFRVPYEVVKQRLQVGAYPTTAVALRTIYSQEGLWGFFGKGGIKTQWARDIPYAMVTLLVYETLQ-KAAARRRIFGEASALENMVFGAVAGGMGSLVTNPMDMVKTRMMTSPESYAGP-MDAAWTALRKEGPQAFMKGATPRLMHKIPANALFFVVYEFFRTLLGV 899
G+GV +VGSMP+VG+YFG+Y + K+ + + + L+I SA +GN IASF RVPYEV+KQ+LQ G Y T A+ + +G+ GFF GGI Q RDIPYAM TLL YE L+ + + F E+++L + GAVAGG+GS VTNPMD++KTR+ T + Y G M + GP AF++G+ PRL+HK+PAN +FF+ YE FRTLL V
Sbjct: 31 GVGVAVVGSMPSVGLYFGVYSYCKRLIQPRLVPDDPNNKYRGLLMMLTITTSAAIGNTIASFSRVPYEVMKQKLQTGMYTNTWQAMMELAKHDGIRGFFPMGGIGIQMLRDIPYAMTTLLCYELLKVQFQPWKERFKESTSLVDAFTGAVAGGVGSYVTNPMDVIKTRLQTESQLYGGSIMKCFHDTWMEGGPSAFLRGSVPRLLHKVPANGIFFLFYELFRTLLRV 257 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig46596.11757.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig46596.11757.1 >prot_H-elongata_contig46596.11757.1 ID=prot_H-elongata_contig46596.11757.1|Name=mRNA_H-elongata_contig46596.11757.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=209bp MPAVGIYFGLYHFVKKQMDAKENVSPYLSIMVSAGVGNFIASFFRVPYEVback to top mRNA from alignment at H-elongata_contig46596:1920..4223+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig46596.11757.1 ID=mRNA_H-elongata_contig46596.11757.1|Name=mRNA_H-elongata_contig46596.11757.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2304bp|location=Sequence derived from alignment at H-elongata_contig46596:1920..4223+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig46596:1920..4223+ >mRNA_H-elongata_contig46596.11757.1 ID=mRNA_H-elongata_contig46596.11757.1|Name=mRNA_H-elongata_contig46596.11757.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1254bp|location=Sequence derived from alignment at H-elongata_contig46596:1920..4223+ (Himanthalia elongata Himel1 dioecious)back to top |