mRNA_H-elongata_contig46596.11757.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig46596.11757.1
Unique NamemRNA_H-elongata_contig46596.11757.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig46596.11757.1 vs. uniprot
Match: A0A6H5L399_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L399_9PHAE)

HSP 1 Score: 396 bits (1017), Expect = 1.050e-131
Identity = 198/246 (80.49%), Postives = 219/246 (89.02%), Query Frame = 3
Query:  189 RVTLLQAGRELVARGGVKELYQGLGVTLVGSMPAVGIYFGLYHFVKKQMDAKENVSPYLSIMVSAGVGNFIASFFRVPYEVVKQRLQVGAYPTTAVALRTIYSQEGLWGFFGKGGIKTQWARDIPYAMVTLLVYETLQKAAARRR-------IFGEASALENMVFGAVAGGMGSLVTNPMDMVKTRMMTSPESYAGPMDAAWTALRKEGPQAFMKGATPRLMHKIPANALFFVVYEFFRTLLGVTR 905
            R+TLLQAGR+L+ARGGV ELYQGLGVTLVGSMPAVG+YFGLY FVK QMDAK+ +SPYLSI VSAGVGNFIASFFRVPYEVVKQRLQVG YPTT VA+++IY + GL GFFGKGG+KTQWARDIPYAMVTLLVYETLQKAAARR+          +A+ +ENMV GA+AGGMGSLVTNPMDM+KTRMMTSPE YAGPMDAAW AL KEGPQAF+KGATPRL+HKIPANA FFV YEFFR++LGVTR
Sbjct:  243 RMTLLQAGRDLLARGGVPELYQGLGVTLVGSMPAVGVYFGLYQFVKNQMDAKQGISPYLSITVSAGVGNFIASFFRVPYEVVKQRLQVGQYPTTMVAIQSIYHEGGLVGFFGKGGLKTQWARDIPYAMVTLLVYETLQKAAARRKGPPGTKKKGAKANPIENMVIGAIAGGMGSLVTNPMDMIKTRMMTSPELYAGPMDAAWKALSKEGPQAFLKGATPRLLHKIPANAFFFVAYEFFRSILGVTR 488          
BLAST of mRNA_H-elongata_contig46596.11757.1 vs. uniprot
Match: A0A836CPL2_9STRA (Mitochondrial carrier domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPL2_9STRA)

HSP 1 Score: 295 bits (754), Expect = 6.640e-95
Identity = 147/244 (60.25%), Postives = 183/244 (75.00%), Query Frame = 3
Query:  183 NERVTLLQAGRELVARGGVKELYQGLGVTLVGSMPAVGIYFGLYHFVKKQMDAKENVSPYLSIMVSAGVGNFIASFFRVPYEVVKQRLQVGAYPTTAVALRTIYSQEGLWGFFGKGGIKTQWARDIPYAMVTLLVYETLQKAAARR---RIFGEASALENMVFGAVAGGMGSLVTNPMDMVKTRMMTSPESYAGPMDAAWTALRKEGPQAFMKGATPRLMHKIPANALFFVVYEFFRTLLGVTR 905
            +E +    AGR L+ R GV  LY GLGV+LVG+MP++GIYFG+Y + + ++D    +SP  SI +SAG+GNF+ASFFRVPYE+VKQRLQ G YP TA ALR +Y+  G+  FFG+GGI TQ ARD+PYAMVTL+VYE+LQ AA RR   R   + S LE M+ GA+AGG+G+L TNPMD+VKTRMMT+P  YA   DAA   LR +G +AF +GATPRL+HK+PAN LFF  YE FRTLLGV R
Sbjct:   39 SESLNFFTAGRLLLKRNGVGALYSGLGVSLVGAMPSIGIYFGIYQYCRGKLDQSPRLSPLGSIALSAGIGNFVASFFRVPYEIVKQRLQAGVYPDTATALRIMYADGGVGAFFGRGGIATQLARDVPYAMVTLMVYESLQTAARRRAAARGAAKPSHLETMLIGAIAGGVGTLATNPMDVVKTRMMTAPHLYASAWDAAVVTLRADGARAFARGATPRLLHKVPANGLFFAAYELFRTLLGVRR 282          
BLAST of mRNA_H-elongata_contig46596.11757.1 vs. uniprot
Match: W7TPC5_9STRA (Mitochondrial carrier n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TPC5_9STRA)

HSP 1 Score: 241 bits (615), Expect = 3.830e-72
Identity = 136/253 (53.75%), Postives = 173/253 (68.38%), Query Frame = 3
Query:  198 LLQAGRELVARGGVKELYQGLGVTLVGSMPAVGIYFGLYHFVKKQMDAKENVSP-----YLSIMVSAGVGNFIASFFRVPYEVVKQRLQVGAYPTTAVALRTIYSQEG-LWGFFGKGGIKTQWARDIPYAMVTLLVYETLQKAAARRRIF-GEA--------SALENMVFGAVAGGMGSLVTNPMDMVKTRMMTSPESYAGPMDAAWTALRK----EGPQAFMKGATPRLMHKIPANALFFVVYEFFRTLLGV 899
            +L+A ++LV+R GV  LY GLGVTLVGS+PAV +YFG+Y  VKK +   + + P      L +  SAGVGN +AS FRVPYEVVKQRLQ G Y +T  ALRT+Y  EG L  FFG  G+ +Q  RD+PYA+VTLL YE++++  A RR+  GE+        +ALE+ V GA+AGG+GSLV+NPMD+VKTR+MT P  Y       W+A+ K    EGP AF KG  PRL+HK+PANA+FF  YE FR LL V
Sbjct:  177 MLEAAQDLVSRKGVSALYTGLGVTLVGSIPAVSVYFGVYQAVKKAL--LQALPPGLGWSLLGVAASAGVGNTVASIFRVPYEVVKQRLQAGMYVSTGQALRTMYRTEGGLLAFFGTSGVASQILRDVPYAIVTLLTYESMRRTRAERRLGPGESKGGLTKGSTALEDSVMGALAGGVGSLVSNPMDVVKTRVMTQPGLYP----TVWSAVSKVWVEEGPSAFFKGTVPRLLHKVPANAIFFATYEIFRGLLRV 423          
BLAST of mRNA_H-elongata_contig46596.11757.1 vs. uniprot
Match: A0A7S1BCN2_9STRA (Hypothetical protein n=3 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BCN2_9STRA)

HSP 1 Score: 226 bits (575), Expect = 1.270e-66
Identity = 121/243 (49.79%), Postives = 160/243 (65.84%), Query Frame = 3
Query:  234 GVKELYQGLGVTLVGSMPAVGIYFGLYHFVKKQMDAK-------------------ENVSPYLSIMVSAGVGNFIASFFRVPYEVVKQRLQVGAYPTTAVALRTIYSQEGLWGFFGKGGIKTQWARDIPYAMVTLLVYETLQKAAARRRIF--GEASALENMVFGAVAGGMGSLVTNPMDMVKTRMMTSPESYA-GPMDAAWTALRKEGPQAFMKGATPRLMHKIPANALFFVVYEFFRTLLG 896
            G+ +LY GLGVT+VGSMP+VG+YFG+Y + K+++                      E      S  +SA +GN +ASF RVP+EVVKQ+LQ G +P T +ALR++ ++ GL  FF  GG+  Q ARDIPYA+ TL+ YE +++   R      G +SA  NMV GA AGG+GS +TNPMD+VKTR+ TSPE Y  G +  A T L++EGP AF+KG  PRLMHKIPANA+FF+ YEFFR +L 
Sbjct:  130 GIGQLYAGLGVTVVGSMPSVGLYFGVYSYCKQRIGPALLRKYDLYSKDIGFEGKHWEGTVVVFSQALSAAIGNTVASFSRVPFEVVKQKLQTGVFPNTFIALRSMINEGGLRSFFPVGGVSAQMARDIPYAIFTLVTYEYIKQKWVRPNELKEGASSAWRNMVTGATAGGIGSFLTNPMDVVKTRLQTSPEIYGRGVLQCAMTTLQEEGPAAFLKGMRPRLMHKIPANAVFFLWYEFFRRVLN 372          
BLAST of mRNA_H-elongata_contig46596.11757.1 vs. uniprot
Match: A0A7S2V6F4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6F4_9STRA)

HSP 1 Score: 223 bits (568), Expect = 3.130e-66
Identity = 122/245 (49.80%), Postives = 158/245 (64.49%), Query Frame = 3
Query:  189 RVTLLQAGRELVARGGVKELYQGLGVTLVGSMPAVGIYFGLYHFVKKQMDAKENVSPYLSIMVSAGVGNFIASFFRVPYEVVKQRLQVGAYPTTAVALRTIYSQEGLWGFFGKGGIKTQWARDIPYAMVTLLVYETLQ---KAAARRRIFGEASALENMVFGAVAGGMGSLVTNPMDMVKTRMMTSPESYAGPMDAAWTA---LRKEGPQAFMKGATPRLMHKIPANALFFVVYEFFRTLLGVTR 905
            +V +  AG +++ RGG K LY GLGVT+VGS P+  +YFG YH  ++  D    +   +SI+ SAG+GN +AS  R PYE+VKQRLQ G YP T  AL +I   EG+ GFF   G+K Q ARDIPYAM+TLLVYETLQ   K    R +        ++  G +AGG+G+ +TNPMD+VKTR+MT+     GP     TA   L +EG   F +GA PRL+H+IPANA+FF  YE FR LLG+ R
Sbjct:   93 QVGMFAAGSQVMQRGGFKALYSGLGVTVVGSAPSSAVYFGTYHCCRRWFDGL-GLQKSVSILASAGIGNTVASCLRAPYELVKQRLQYGMYPNTWTALTSIVRDEGVQGFFMSSGLKIQMARDIPYAMMTLLVYETLQDYVKKKHPRLLENGKKVWVDLAIGGIAGGVGTWMTNPMDVVKTRIMTAAVGPQGPPLVTTTANKILAEEGLLGFYRGAVPRLLHRIPANAVFFPFYECFRDLLGIKR 336          
BLAST of mRNA_H-elongata_contig46596.11757.1 vs. uniprot
Match: K0R3I4_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R3I4_THAOC)

HSP 1 Score: 209 bits (533), Expect = 1.420e-61
Identity = 119/259 (45.95%), Postives = 166/259 (64.09%), Query Frame = 3
Query:  198 LLQAGRELVARGGVKELYQGLGVTLVGSMPAVGIYFGLYHFVKK-------------QMDAKENVSP-----YLSIMVSAGVGNFIASFFRVPYEVVKQRLQVGAYPTTAVALRTIYSQEGLWGFFGKGGIKTQWARDIPYAMVTLLVYETLQKAAARRRIFGEASAL--ENMVFGAVAGGMGSLVTNPMDMVKTRMMTSP----ESYAGPMDAAWTALRKEG-PQAFMKGATPRLMHKIPANALFFVVYEFFRTLLGV 899
            L +AGR +V RGGV ELY GL V+ +GSMP+VG+YFG+Y + K+             + D K  +        +SI  SA +GN +ASF RVPYEVVKQ LQ G Y +T  A+++++++ GL  FF  GGI  Q ARDIPYA+ TLL YE L++  A +R   + +     +MV G  +GG+GS +TNPMD+VKTR+ T P     + +G + A   A+ +EG P AF++G+ PRL+HK+PAN+ FF+ YEFF+ LL V
Sbjct:   33 LFEAGRIVVGRGGVGELYAGLAVSALGSMPSVGLYFGVYSYCKRTVGSAFTRCLGSQRQDGKRPLCSDESLRTISIACSAAIGNTVASFSRVPYEVVKQNLQTGKYSSTVTAMQSMWNESGLRAFFPLGGISVQMARDIPYAIFTLLSYEFLREKWALKRSQQDPNGRWWRDMVAGGASGGLGSYLTNPMDVVKTRIQTPPVGDSTACSGSIMACANAVWEEGGPSAFLRGSVPRLLHKVPANSCFFLFYEFFKRLLRV 291          
BLAST of mRNA_H-elongata_contig46596.11757.1 vs. uniprot
Match: A0A7S1UWT0_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UWT0_9STRA)

HSP 1 Score: 210 bits (534), Expect = 6.240e-60
Identity = 122/260 (46.92%), Postives = 164/260 (63.08%), Query Frame = 3
Query:  165 LSLGA--KNERVTLLQAGRELVAR-GGVKELYQGLGVTLVGSMPAVGIYFGLYHFVKKQMDAK----------ENVSPYLSIMVSAGVGNFIASFFRVPYEVVKQRLQVGAYPTTAVALRTIYSQEGLWGFFGKGGIKTQWARDIPYAMVTLLVYETLQ-KAAARRRIFGEASALENMVFGAVAGGMGSLVTNPMDMVKTRMMTSPESYAGP-MDAAWTALRKEGPQAFMKGATPRLMHKIPANALFFVVYEFFRTLLGV 899
            +S GA  K   +TL QA   +V+R GG  ELY G+GV +VGSMP+VG+YFG+Y + K+ +  +            +   L+I  SA +GN IASF RVPYEV+KQ+LQ G Y  T  A+  +   +G+ GFF  GGI  Q  RDIPYAM TLL YE L+ +    +  F E+++L +   GAVAGG+GS VTNPMD++KTR+ T  + Y G  M        + GP AF++G+ PRL+HK+PAN +FF+ YE FRTLL V
Sbjct:  164 VSTGAPQKAAALTLKQAMDLVVSRPGGFFELYAGVGVAVVGSMPSVGLYFGVYSYCKRLIQPRLVPDDPNNKYRGLLMMLTITTSAAIGNTIASFSRVPYEVMKQKLQTGMYTNTWQAMMELAKHDGIRGFFPMGGIGIQMLRDIPYAMTTLLCYELLKVQFQPWKERFKESTSLVDAFTGAVAGGVGSYVTNPMDVIKTRLQTESQLYGGSIMKCFHDTWMEGGPSAFLRGSVPRLLHKVPANGIFFLFYELFRTLLRV 423          
BLAST of mRNA_H-elongata_contig46596.11757.1 vs. uniprot
Match: A0A7S3V944_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V944_9STRA)

HSP 1 Score: 207 bits (528), Expect = 1.020e-59
Identity = 119/267 (44.57%), Postives = 166/267 (62.17%), Query Frame = 3
Query:  177 AKNERVTLLQAGRELVAR-GGVKELYQGLGVTLVGSMPAVGIYFGLYHFVKKQM------------DAKENVSPY----LSIMVSAGVGNFIASFFRVPYEVVKQRLQVGAYPTTAVALRTIYSQEGLWGFFGKGGIKTQWARDIPYAMVTLLVYETLQKAAARR---------RIFGEASALENMVFGAVAGGMGSLVTNPMDMVKTRMMTSPESYAGPM-DAAWTALRKEGPQAFMKGATPRLMHKIPANALFFVVYEFFRTLLG 896
            A  + +TL QA     +R GGV ELY GLGV+ +G+MP+VG+YFG+Y + K+++            D  + +S      L++  SA +GN IASF RVPYEVVKQ+LQ G Y +T  AL+ + +  GL  FF  GG+  Q  RDIPYA+VTLL YE L+     +         +   + +  ++M+ G VAGGMGS +TNPMD++KTR+  + E Y+G +   A   L + GP AF++G+ PRL+HK+PANA FFV YEFFR +LG
Sbjct:  110 ASGKALTLKQAANVATSRPGGVLELYAGLGVSAIGAMPSVGLYFGVYSYAKEKIGPFVQNRLGKDEDCVDGLSKAGVRSLTVATSAAIGNTIASFSRVPYEVVKQKLQTGEYSSTFGALKHMCANGGLRSFFPMGGVAIQMYRDIPYAIVTLLTYECLRDHWVNKNEELSLKDGQEAKKVAPWKDMIAGGVAGGMGSFMTNPMDVIKTRLQVNSELYSGNVWVCASRTLEEGGPSAFLRGSVPRLIHKVPANACFFVFYEFFRRVLG 376          
BLAST of mRNA_H-elongata_contig46596.11757.1 vs. uniprot
Match: A0A1Z5K4E5_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K4E5_FISSO)

HSP 1 Score: 199 bits (507), Expect = 2.420e-57
Identity = 110/241 (45.64%), Postives = 157/241 (65.15%), Query Frame = 3
Query:  192 VTLLQAGRELVAR-GGVKELYQGLGVTLVGSMPAVGIYFGLYHFVKKQMDAKE--NVSPYLSIMVSAGVGNFIASFFRVPYEVVKQRLQVGAYPTTAVALRTIYS-QEGLWGFFGKGGIKTQWARDIPYAMVTLLVYETLQKAAARRRIFGEASALENMVFGAVAGGMGSLVTNPMDMVKTRMMTSPESYAGPMDAAWTALRKEGP-QAFMKGATPRLMHKIPANALFFVVYEFFRTLLGV 899
            +T+ +A RE+++R GG    Y GLGVT++G+MP+V +YFG+Y + KK +         P  S+ +SA +GN +ASF RVPYEV+KQ+LQ G Y +T  AL+ I S +E +   F KGGI  Q  RD+PYA++TL++YETLQ    + R    ++ + +   G  AGG GS  TNP D++KTR+ T+ E Y G +      + +EG   AF++G+ PRL+HK+PANA FF+ YE FR LLGV
Sbjct:   75 LTIWEACREIMSRPGGFWNFYAGLGVTVIGAMPSVALYFGVYSYCKKTLLNSHWGKKHPTASVALSAAIGNSVASFSRVPYEVLKQQLQTGVYTSTWQALKEISSSKEYMSLLFPKGGIAIQMLRDVPYAVITLMLYETLQNTFHKSR----SNKVIDFCVGGAAGGFGSWATNPTDVIKTRLQTNSELYGGSVRTCTAEIWREGGIMAFLRGSVPRLVHKVPANAFFFLFYEGFRQLLGV 311          
BLAST of mRNA_H-elongata_contig46596.11757.1 vs. uniprot
Match: A0A7S1Y570_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y570_9STRA)

HSP 1 Score: 197 bits (502), Expect = 3.870e-57
Identity = 107/227 (47.14%), Postives = 145/227 (63.88%), Query Frame = 3
Query:  255 GLGVTLVGSMPAVGIYFGLYHFVKKQMDAK----------ENVSPYLSIMVSAGVGNFIASFFRVPYEVVKQRLQVGAYPTTAVALRTIYSQEGLWGFFGKGGIKTQWARDIPYAMVTLLVYETLQ-KAAARRRIFGEASALENMVFGAVAGGMGSLVTNPMDMVKTRMMTSPESYAGP-MDAAWTALRKEGPQAFMKGATPRLMHKIPANALFFVVYEFFRTLLGV 899
            G+GV +VGSMP+VG+YFG+Y + K+ +  +            +   L+I  SA +GN IASF RVPYEV+KQ+LQ G Y  T  A+  +   +G+ GFF  GGI  Q  RDIPYAM TLL YE L+ +    +  F E+++L +   GAVAGG+GS VTNPMD++KTR+ T  + Y G  M        + GP AF++G+ PRL+HK+PAN +FF+ YE FRTLL V
Sbjct:   31 GVGVAVVGSMPSVGLYFGVYSYCKRLIQPRLVPDDPNNKYRGLLMMLTITTSAAIGNTIASFSRVPYEVMKQKLQTGMYTNTWQAMMELAKHDGIRGFFPMGGIGIQMLRDIPYAMTTLLCYELLKVQFQPWKERFKESTSLVDAFTGAVAGGVGSYVTNPMDVIKTRLQTESQLYGGSIMKCFHDTWMEGGPSAFLRGSVPRLLHKVPANGIFFLFYELFRTLLRV 257          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig46596.11757.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L399_9PHAE1.050e-13180.49Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CPL2_9STRA6.640e-9560.25Mitochondrial carrier domain-containing protein n=... [more]
W7TPC5_9STRA3.830e-7253.75Mitochondrial carrier n=3 Tax=Monodopsidaceae TaxI... [more]
A0A7S1BCN2_9STRA1.270e-6649.79Hypothetical protein n=3 Tax=Corethron hystrix Tax... [more]
A0A7S2V6F4_9STRA3.130e-6649.80Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
K0R3I4_THAOC1.420e-6145.95Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S1UWT0_9STRA6.240e-6046.92Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S3V944_9STRA1.020e-5944.57Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A1Z5K4E5_FISSO2.420e-5745.64Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A7S1Y570_9STRA3.870e-5747.14Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig46596contigH-elongata_contig46596:1920..4223 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score345.9
Seed ortholog evalue1.3e-92
Seed eggNOG ortholog2880.D7FJT3
KEGG koko:K15111
KEGG TC2.A.29.18
EggNOG free text desc.S-adenosyl-L-methionine transmembrane transport
EggNOG OGsKOG0768@1,KOG0768@2759
Ec32 ortholog descriptionMitochondrial substrate/solute carrier
Ec32 orthologEc-06_010250.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categoryother localisation
Exons4
Model size1218
Cds size627
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig46596.11757.1prot_H-elongata_contig46596.11757.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig46596 2201..3913 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930771.3066657-UTR-H-elongata_contig46596:1919..22001622930771.3066657-UTR-H-elongata_contig46596:1919..2200Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig46596 1920..2200 +
1691679562.819915-UTR-H-elongata_contig46596:1919..22001691679562.819915-UTR-H-elongata_contig46596:1919..2200Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig46596 1920..2200 +
1622930771.3997552-UTR-H-elongata_contig46596:3913..42231622930771.3997552-UTR-H-elongata_contig46596:3913..4223Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig46596 3914..4223 +
1691679562.877993-UTR-H-elongata_contig46596:3913..42231691679562.877993-UTR-H-elongata_contig46596:3913..4223Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig46596 3914..4223 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930771.3384159-CDS-H-elongata_contig46596:2200..23251622930771.3384159-CDS-H-elongata_contig46596:2200..2325Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46596 2201..2325 +
1691679562.8322697-CDS-H-elongata_contig46596:2200..23251691679562.8322697-CDS-H-elongata_contig46596:2200..2325Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46596 2201..2325 +
1622930771.357322-CDS-H-elongata_contig46596:2638..27321622930771.357322-CDS-H-elongata_contig46596:2638..2732Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46596 2639..2732 +
1691679562.8440418-CDS-H-elongata_contig46596:2638..27321691679562.8440418-CDS-H-elongata_contig46596:2638..2732Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46596 2639..2732 +
1622930771.3749084-CDS-H-elongata_contig46596:3162..34621622930771.3749084-CDS-H-elongata_contig46596:3162..3462Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46596 3163..3462 +
1691679562.8582628-CDS-H-elongata_contig46596:3162..34621691679562.8582628-CDS-H-elongata_contig46596:3162..3462Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46596 3163..3462 +
1622930771.387267-CDS-H-elongata_contig46596:3805..39131622930771.387267-CDS-H-elongata_contig46596:3805..3913Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46596 3806..3913 +
1691679562.8684442-CDS-H-elongata_contig46596:3805..39131691679562.8684442-CDS-H-elongata_contig46596:3805..3913Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46596 3806..3913 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig46596.11757.1

>prot_H-elongata_contig46596.11757.1 ID=prot_H-elongata_contig46596.11757.1|Name=mRNA_H-elongata_contig46596.11757.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=209bp
MPAVGIYFGLYHFVKKQMDAKENVSPYLSIMVSAGVGNFIASFFRVPYEV
VKQRLQVGAYPTTAVALRTIYSQEGLWGFFGKGGIKTQWARDIPYAMVTL
LVYETLQKAAARRRIFGEASALENMVFGAVAGGMGSLVTNPMDMVKTRMM
TSPESYAGPMDAAWTALRKEGPQAFMKGATPRLMHKIPANALFFVVYEFF
RTLLGVTR*
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mRNA from alignment at H-elongata_contig46596:1920..4223+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig46596.11757.1 ID=mRNA_H-elongata_contig46596.11757.1|Name=mRNA_H-elongata_contig46596.11757.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2304bp|location=Sequence derived from alignment at H-elongata_contig46596:1920..4223+ (Himanthalia elongata Himel1 dioecious)
CATACACGCCTCTCTGTGCTTGTCTACAGCAGACGGCAAAGACAGCTAGC AGTTCCGTTGTAGTCGATACCCCCCATGTCGTGTGAGAGAACCCTTCCTT ATGTTTTATTTCTTCCTTCCTTTCTTTAGTAATACTGAGGGGTTGTGTTC CCACTCGGGGGTGGCTTTCGCTTGGCGCCAAAAACGAAAGGGTTACGCTG CTGCAGGCGGGGAGAGAACTGGTCGCCCGCGGAGGAGTGAAAGAGTTGTA TCAGGGACTCGGTGTGACGCTGGTGGGCTCCATGCCCGCCGTCGGCATTT ATTTTGGTCTTTATCATTTTGTCAAGAAGCAAATGGATGCGAAGGAGAAC GTGTCGCCGTACCTCAGCATCATGGTCAGCGCAGGAGTGGGTAACTTCAT TGCCAGGTGGGGGGGGCTACTTCATTGCCAGGAGTGGGTAACTTCATTGC CAGGTGGGGGGGGGCTATTTACAGAGTAGCCCTTCTCTAATTGATTTTTC TTCAGAATGCGTGGCAAATGCGAGACTGTAGACCGAAGCCTATGATCGAG TAACCAAGCACTGGAGTAGCAACAAGAGGGTAAGACGACTGGTGACTCTG CAGGCTTGGTCTCGCCGACAACCCCGCTCGCCGTATATGCTCACTCTAGG GGTCCCTTCTCATTGCCCTTGTGCGTTGCCCCACCCTGCTCGGCGTTCGC TCCTAATGGGGGGGTAAAGCTTCTTCCGTGTCCCCTACGAGGTGGTAAAG CAGAGGCTGCAGGTCGGCGCTTATCCCACAACCGCTGTCGCTTTGCGAAC CATTTACAGCCAGGTGAACCAGTGGTGCATAGTATGTAACAGTGTAGTCG ACGAGGTGGGAATATCTACACAGCTATTATAGAGCCTATCGCCGGTGCAA CGGTTGTACGTGTGCATCCTTTCTAGACTGTGGAGTCAGCGATCTACTGC ACTAAACTGTAGTCACCGTTGGCTTTTGATACGATCGATCGATGTACTCA CTAAGAGTGTTAAAGATTTTTTAGTGATTGAAACATGTGGGATTGGTAGC GCGGACGGAGAAGCCCCTGAACGTGCTGCCTTTGCTGCCCCTCGGTATGA CGTTATCTGAGCTACCGAACTACCGACATCAAGAACCGTACTATGTTTCT GCACGCTCTCCGAAATTTGAAGTTGATATACGTGTGATGTGCCTGTATTT CACGCGTCCTCTCCCTCTTGTCCTGTATTTCGCTTCCAAACAGGAAGGCC TGTGGGGATTCTTCGGGAAAGGAGGCATCAAGACCCAATGGGCGCGAGAC ATCCCCTACGCGATGGTGACACTCCTGGTGTATGAAACCCTGCAGAAGGC GGCGGCGCGGCGGAGAATATTCGGTGAAGCAAGCGCGTTGGAGAACATGG TGTTCGGCGCGGTCGCGGGAGGCATGGGTTCGTTGGTGACGAACCCCATG GACATGGTGAAGACAAGAATGATGACGTCGCCCGAGAGCTACGCGGGACC CATGGACGCAGCCTGGACAGCGTTGCGGAAGGAGGGTCCCCAGGTTAGAA GCTGAAAGCTCAACGTATCCTCGAGCCCTCACATGTGTGCATTCGTTCGT CCTGATATCAAGCTTGGAGAGGACATTAGTGATCACGAGCGCGTCGCCTT GTTGTATCGATGCCACGACCGTGCGCAGATCTAAGGGTGTGGTTACGGTT GAATTATAAAGGAGAGCTGATGTCCTCGTTCATGAACAGCCCGCTGGCCA GATCACCTCTGCTGAACCTCGATCGAGCGGTGTCGGTTTGGCATGCTGGT TGTGCGCCTCCCTCCCCTCACCCCCTCTTCAAACACTCACCCCCTCAAGC ACGATACACCCATACACCCATACACGCGTTTCTTAGGCATTTATGAAGGG CGCTACACCGAGGCTGATGCACAAGATACCGGCAAACGCTCTCTTTTTCG TGGTGTACGAGTTCTTCAGAACTCTCTTGGGCGTGACACGATGATGGACG CGGAACGTGCGCGAATGGTGTACCGTTTGCTTGCACTTCGTGTAGGACAC CTCTGGGCCGAAATCGTAAACCAAAGCCTTGAAATTTAACTTTGCCCGTT ACATGTCGGGCCGCCTGGGGGTTTTTTATGCTCGTGTAGAAATATTAATT TCAGAAGGCGGGGAGCTTTAGAGGACGTTCCTCGCCAATGCTTGCAGTCT GTGCGTGTTTTCGTCCCTTGGTAGGTATCCAAGAAGCGGCGCCGCACCGT TCTAGTATGAAGTGGCTTAGCGGGACGCGCAGAGCGGGTGGAGATCCTAC AGTA
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Coding sequence (CDS) from alignment at H-elongata_contig46596:1920..4223+

>mRNA_H-elongata_contig46596.11757.1 ID=mRNA_H-elongata_contig46596.11757.1|Name=mRNA_H-elongata_contig46596.11757.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1254bp|location=Sequence derived from alignment at H-elongata_contig46596:1920..4223+ (Himanthalia elongata Himel1 dioecious)
ATGCCCGCCGTCGGCATTTATTTTGGTCTTTATCATTTTGTCAAGAAGCA
AATGGATGCGAAGGAGAACGTGTCGCCGTACCTCAGCATCATGGTCAGCG
CAGGAGTGGGTAACTTCATTGCCAGATGCCCGCCGTCGGCATTTATTTTG
GTCTTTATCATTTTGTCAAGAAGCAAATGGATGCGAAGGAGAACGTGTCG
CCGTACCTCAGCATCATGGTCAGCGCAGGAGTGGGTAACTTCATTGCCAG
CTTCTTCCGTGTCCCCTACGAGGTGGTAAAGCAGAGGCTGCAGGTCGGCG
CTTATCCCACAACCGCTGTCGCTTTGCGAACCATTTACAGCCAGCTTCTT
CCGTGTCCCCTACGAGGTGGTAAAGCAGAGGCTGCAGGTCGGCGCTTATC
CCACAACCGCTGTCGCTTTGCGAACCATTTACAGCCAGGAAGGCCTGTGG
GGATTCTTCGGGAAAGGAGGCATCAAGACCCAATGGGCGCGAGACATCCC
CTACGCGATGGTGACACTCCTGGTGTATGAAACCCTGCAGAAGGCGGCGG
CGCGGCGGAGAATATTCGGTGAAGCAAGCGCGTTGGAGAACATGGTGTTC
GGCGCGGTCGCGGGAGGCATGGGTTCGTTGGTGACGAACCCCATGGACAT
GGTGAAGACAAGAATGATGACGTCGCCCGAGAGCTACGCGGGACCCATGG
ACGCAGCCTGGACAGCGTTGCGGAAGGAGGGTCCCCAGGAAGGCCTGTGG
GGATTCTTCGGGAAAGGAGGCATCAAGACCCAATGGGCGCGAGACATCCC
CTACGCGATGGTGACACTCCTGGTGTATGAAACCCTGCAGAAGGCGGCGG
CGCGGCGGAGAATATTCGGTGAAGCAAGCGCGTTGGAGAACATGGTGTTC
GGCGCGGTCGCGGGAGGCATGGGTTCGTTGGTGACGAACCCCATGGACAT
GGTGAAGACAAGAATGATGACGTCGCCCGAGAGCTACGCGGGACCCATGG
ACGCAGCCTGGACAGCGTTGCGGAAGGAGGGTCCCCAGGCATTTATGAAG
GGCGCTACACCGAGGCTGATGCACAAGATACCGGCAAACGCTCTCTTTTT
CGTGGTGTACGAGTTCTTCAGAACTCTCTTGGGCGTGACACGATGAGCAT
TTATGAAGGGCGCTACACCGAGGCTGATGCACAAGATACCGGCAAACGCT
CTCTTTTTCGTGGTGTACGAGTTCTTCAGAACTCTCTTGGGCGTGACACG
ATGA
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