mRNA_H-elongata_contig46530.11748.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig46530.11748.1
Unique NamemRNA_H-elongata_contig46530.11748.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig46530.11748.1 vs. uniprot
Match: D8LB11_ECTSI (Dihydroorotate dehydrogenase (quinone), mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB11_ECTSI)

HSP 1 Score: 212 bits (539), Expect = 7.840e-64
Identity = 112/173 (64.74%), Postives = 133/173 (76.88%), Query Frame = 1 
Query:    1 KVRESTGSASPLPLLVKIAPDLSEQEKEDIAAVVLEMKVDGLVVSNTTVSRPRGLKSAHKKEGGGLSGSPLKSLATDTVRDMYRLTHGKARGRGNQWAAALLVPLLGVGGVATGRDAYEKIRAGASLVQLYSLLVFRGPAVIPDIKSELAALLNADGFSSVEEAVGADHRLAR 519
            +V ESTG+  PLPLLVKIAPDL+E+EK DIA VVL  KVDGL+VSNTTVSRP  L+S  K E GGLSG PL  ++T+T+RDMYRLT GK             VPL+GVGGV TG++AY+KIRAGASLVQ+YSLLV++GP  +P IK+ELA LL  DGF+SV EAVG+DHR  R
Sbjct:  300 QVCESTGNPMPLPLLVKIAPDLTEREKRDIANVVLSTKVDGLIVSNTTVSRPSYLRSESKGEAGGLSGKPLTKMSTETIRDMYRLTKGK-------------VPLIGVGGVGTGQEAYDKIRAGASLVQVYSLLVYKGPGAVPGIKAELADLLKTDGFTSVAEAVGSDHRPPR 459
[Close]
BLAST of mRNA_H-elongata_contig46530.11748.1 vs. uniprot
Match: A0A0S7KLQ1_9TELE (Dihydroorotate dehydrogenase (quinone), mitochondrial (Fragment) n=2 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7KLQ1_9TELE)

HSP 1 Score: 186 bits (473), Expect = 1.350e-57
Identity = 99/158 (62.66%), Postives = 116/158 (73.42%), Query Frame = 1 
Query:   37 PLLVKIAPDLSEQEKEDIAAVVLEMKVDGLVVSNTTVSRPRGLKSAHKKEGGGLSGSPLKSLATDTVRDMYRLTHGKARGRGNQWAAALLVPLLGVGGVATGRDAYEKIRAGASLVQLYSLLVFRGPAVIPDIKSELAALLNADGFSSVEEAVGADHR 510
            P+LVKIAPDLS Q+K+DIA VV E+ VDGL+VSNTTVSRP  LK  HK E GGLSG PLK L+T TVR+MY LT GK             VP++G+GGVA+G+DA +KIRAGASLVQLY+ L ++GP V+  IK EL  LL   GFS V EAVGADHR
Sbjct:   12 PVLVKIAPDLSAQDKQDIADVVTELGVDGLMVSNTTVSRPETLKDPHKSEAGGLSGQPLKDLSTKTVREMYNLTKGK-------------VPIIGIGGVASGQDAMDKIRAGASLVQLYTALTYQGPPVVTKIKRELEQLLKDQGFSCVSEAVGADHR 156
[Close]
BLAST of mRNA_H-elongata_contig46530.11748.1 vs. uniprot
Match: A0A1A8ADS0_NOTFU (Dihydroorotate dehydrogenase (quinone), mitochondrial (Fragment) n=1 Tax=Nothobranchius furzeri TaxID=105023 RepID=A0A1A8ADS0_NOTFU)

HSP 1 Score: 186 bits (471), Expect = 5.160e-57
Identity = 99/170 (58.24%), Postives = 121/170 (71.18%), Query Frame = 1 
Query:    1 KVRESTGSASPLPLLVKIAPDLSEQEKEDIAAVVLEMKVDGLVVSNTTVSRPRGLKSAHKKEGGGLSGSPLKSLATDTVRDMYRLTHGKARGRGNQWAAALLVPLLGVGGVATGRDAYEKIRAGASLVQLYSLLVFRGPAVIPDIKSELAALLNADGFSSVEEAVGADHR 510
            K R++       P+LVKIAPDL++Q+K DIA VV E+ VDGL+V+NTTVSRP  L+  HK E GGLSG PLK LAT TVR+MYRLT GK             VP++G+GGV++G+DA EKIRAGASLVQLY+ L ++GP V+  IK EL  LL   GFS V EAVGADH+
Sbjct:   22 KERDALQEKHKPPVLVKIAPDLTDQDKRDIADVVTELGVDGLMVTNTTVSRPETLQDPHKSEAGGLSGQPLKDLATKTVREMYRLTQGK-------------VPIIGIGGVSSGQDAMEKIRAGASLVQLYTALTYQGPPVVTKIKRELEQLLKDQGFSCVSEAVGADHK 178
[Close]
BLAST of mRNA_H-elongata_contig46530.11748.1 vs. uniprot
Match: UPI0014590845 (dihydroorotate dehydrogenase (quinone), mitochondrial-like n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI0014590845)

HSP 1 Score: 191 bits (485), Expect = 1.760e-56
Identity = 101/170 (59.41%), Postives = 127/170 (74.71%), Query Frame = 1 
Query:    7 RESTGSASPLPLLVKIAPDLSEQEKEDIAAVVLEMK--VDGLVVSNTTVSRPRGLKSAHKKEGGGLSGSPLKSLATDTVRDMYRLTHGKARGRGNQWAAALLVPLLGVGGVATGRDAYEKIRAGASLVQLYSLLVFRGPAVIPDIKSELAALLNADGFSSVEEAVGADHR 510
            R S  S    P+LVKIAPDL++++KED+AAVV + +  +DGL+VSNTTVSRP  L+S HK E GGLSG+PL++LATDT+ DMY+LT GK             +P++GVGG+ATG+DAY+KIRAGASLVQLYS L++ GP V+  IK EL  LL  DGFSSV EAVG DH+
Sbjct:  239 RNSLKSDRKPPILVKIAPDLTQKDKEDVAAVVTKREGFIDGLIVSNTTVSRPSSLQSEHKVETGGLSGAPLRALATDTISDMYKLTKGK-------------LPIIGVGGIATGQDAYDKIRAGASLVQLYSALIYGGPPVVGKIKRELGQLLEVDGFSSVTEAVGIDHK 395
[Close]
BLAST of mRNA_H-elongata_contig46530.11748.1 vs. uniprot
Match: A0A210PJJ5_MIZYE (Dihydroorotate dehydrogenase (quinone), mitochondrial n=1 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=A0A210PJJ5_MIZYE)

HSP 1 Score: 191 bits (485), Expect = 1.800e-56
Identity = 97/170 (57.06%), Postives = 128/170 (75.29%), Query Frame = 1 
Query:    7 RESTGSASPLPLLVKIAPDLSEQEKEDIAAVVLEMK--VDGLVVSNTTVSRPRGLKSAHKKEGGGLSGSPLKSLATDTVRDMYRLTHGKARGRGNQWAAALLVPLLGVGGVATGRDAYEKIRAGASLVQLYSLLVFRGPAVIPDIKSELAALLNADGFSSVEEAVGADHR 510
            R+S  +    P+LVKIAPDL++++KED+AAVV + +  +DGL++SNTT+SRP  L+S HK E GGLSG+PL++LATDT+ DMYRLT G              +P++GVGG++TG+DAYEKIRAGASLVQLYS L++ GP V+  IK EL  +L ADGFSS+ EAVG DH+
Sbjct:  239 RDSLKNDQKPPILVKIAPDLTQKDKEDVAAVVTKREGYIDGLIISNTTISRPSSLQSGHKTETGGLSGAPLRALATDTISDMYRLTRGT-------------LPIIGVGGISTGQDAYEKIRAGASLVQLYSALIYGGPPVVKKIKRELGQILEADGFSSIAEAVGKDHK 395
[Close]
BLAST of mRNA_H-elongata_contig46530.11748.1 vs. uniprot
Match: H9GDG6_ANOCA (Dihydroorotate dehydrogenase (quinone), mitochondrial n=1 Tax=Anolis carolinensis TaxID=28377 RepID=H9GDG6_ANOCA)

HSP 1 Score: 186 bits (471), Expect = 3.510e-56
Identity = 100/164 (60.98%), Postives = 123/164 (75.00%), Query Frame = 1 
Query:   25 ASPLP-LLVKIAPDLSEQEKEDIAAVVLEMKVDGLVVSNTTVSRPRGLKSAHKKEGGGLSGSPLKSLATDTVRDMYRLTHGKARGRGNQWAAALLVPLLGVGGVATGRDAYEKIRAGASLVQLYSLLVFRGPAVIPDIKSELAALLNADGFSSVEEAVGADHRL 513
            A P P +LVKIAPDL+ QEK+DIA+VV E+ VDGLVV+NTTVSRP  L  AH+ E GGLSG PL+ L+T+TVR+MY LT G+             VP++GVGG+ +G+DA EKIRAGASLVQLY+ L ++GP V+  +K ELAALL   GF SV+EAVGADHRL
Sbjct:   94 AEPKPAVLVKIAPDLTAQEKQDIASVVCELGVDGLVVTNTTVSRPDSLHGAHRDEVGGLSGPPLRPLSTETVREMYALTKGR-------------VPIIGVGGICSGQDALEKIRAGASLVQLYTALAYQGPPVVWAVKQELAALLREQGFQSVQEAVGADHRL 244
[Close]
BLAST of mRNA_H-elongata_contig46530.11748.1 vs. uniprot
Match: A0A1A8G5I3_9TELE (Dihydroorotate dehydrogenase (quinone), mitochondrial (Fragment) n=1 Tax=Nothobranchius korthausae TaxID=1143690 RepID=A0A1A8G5I3_9TELE)

HSP 1 Score: 184 bits (468), Expect = 6.960e-56
Identity = 99/170 (58.24%), Postives = 120/170 (70.59%), Query Frame = 1 
Query:    1 KVRESTGSASPLPLLVKIAPDLSEQEKEDIAAVVLEMKVDGLVVSNTTVSRPRGLKSAHKKEGGGLSGSPLKSLATDTVRDMYRLTHGKARGRGNQWAAALLVPLLGVGGVATGRDAYEKIRAGASLVQLYSLLVFRGPAVIPDIKSELAALLNADGFSSVEEAVGADHR 510
            K R++       P+LVKIAPDL++Q+K DIA VV E+ VDGL+V+NTTVSRP  L+  HK E GGLSG PLK LAT TVR+MYRLT GK             VP++G+GGV +G+DA EKIRAGASLVQLY+ L ++GP V+  IK EL  LL   GFS V EAVGADH+
Sbjct:   72 KERDALQEKHKPPVLVKIAPDLTDQDKRDIADVVTELGVDGLMVTNTTVSRPETLQDPHKSEAGGLSGQPLKDLATKTVREMYRLTQGK-------------VPIIGIGGVFSGQDAMEKIRAGASLVQLYTALTYQGPPVVTKIKRELEQLLKDQGFSCVSEAVGADHK 228
[Close]
BLAST of mRNA_H-elongata_contig46530.11748.1 vs. uniprot
Match: A0A151MVL3_ALLMI (Dihydroorotate dehydrogenase (quinone), mitochondrial n=1 Tax=Alligator mississippiensis TaxID=8496 RepID=A0A151MVL3_ALLMI)

HSP 1 Score: 182 bits (461), Expect = 1.020e-55
Identity = 95/157 (60.51%), Postives = 119/157 (75.80%), Query Frame = 1 
Query:   40 LLVKIAPDLSEQEKEDIAAVVLEMKVDGLVVSNTTVSRPRGLKSAHKKEGGGLSGSPLKSLATDTVRDMYRLTHGKARGRGNQWAAALLVPLLGVGGVATGRDAYEKIRAGASLVQLYSLLVFRGPAVIPDIKSELAALLNADGFSSVEEAVGADHR 510
            +LVKIAPDLS Q+K DIA+VV E+ VDGL+V+NTTVSRP  L+ A + E GGLSG PL+ L+T+TVR+MY LT G+             VP++GVGGV++G+DA +KIRAGASLVQLY+ L +RGP V+  +K ELAALL   GF+SV EAVGADHR
Sbjct:   22 VLVKIAPDLSAQDKRDIASVVSELGVDGLIVTNTTVSRPSSLRGAARAEAGGLSGQPLRDLSTETVREMYCLTQGR-------------VPIVGVGGVSSGQDALDKIRAGASLVQLYTALTYRGPPVVGTVKRELAALLRKQGFASVTEAVGADHR 165
[Close]
BLAST of mRNA_H-elongata_contig46530.11748.1 vs. uniprot
Match: A0A6P3VLW9_CLUHA (Dihydroorotate dehydrogenase (quinone), mitochondrial n=1 Tax=Clupea harengus TaxID=7950 RepID=A0A6P3VLW9_CLUHA)

HSP 1 Score: 189 bits (481), Expect = 1.100e-55
Identity = 99/161 (61.49%), Postives = 123/161 (76.40%), Query Frame = 1 
Query:   34 LPLLVKIAPDLSEQEKEDIAAVVLEMKVDGLVVSNTTVSRPRGLKSAHKKEGGGLSGSPLKSLATDTVRDMYRLTHGKARGRGNQWAAALLVPLLGVGGVATGRDAYEKIRAGASLVQLYSLLVFRGPAVIPDIKSELAALLNADGFSSVEEAVGADHRLA 516
            +P+LVKIAPDL+ Q+K+DIA VVLE+ VDG+VVSNTTVSRP  LK +  KE GGLSG PLK++AT+ VRDMYR+T GK             +P++GVGG+A+G+DA +KIRAGASLVQLY+ LV++GP V+  IK EL  LL   GF+SV EAVGADHR A
Sbjct:  248 VPVLVKIAPDLTAQDKQDIADVVLELGVDGIVVSNTTVSRPAALKDSASKETGGLSGQPLKAMATEVVRDMYRMTGGK-------------IPIIGVGGIASGQDALDKIRAGASLVQLYTALVYQGPPVVTKIKRELDQLLKEQGFASVSEAVGADHRSA 395
[Close]
BLAST of mRNA_H-elongata_contig46530.11748.1 vs. uniprot
Match: UPI0018D7F25E (dihydroorotate dehydrogenase (quinone), mitochondrial-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D7F25E)

HSP 1 Score: 189 bits (480), Expect = 1.140e-55
Identity = 97/160 (60.62%), Postives = 124/160 (77.50%), Query Frame = 1 
Query:   37 PLLVKIAPDLSEQEKEDIAAVVL--EMKVDGLVVSNTTVSRPRGLKSAHKKEGGGLSGSPLKSLATDTVRDMYRLTHGKARGRGNQWAAALLVPLLGVGGVATGRDAYEKIRAGASLVQLYSLLVFRGPAVIPDIKSELAALLNADGFSSVEEAVGADHR 510
            PLLVKIAPDL++Q+KEDIAAVV   E KVDGL+V+NTT++RP  L+S HK EGGGLSG PL+ +ATDTVRDMYRLT G+             +P++GVGGV++G+DAYEKI+AGA LVQLY+ L + GP ++  IK EL  LL ADG+++V EA+G+DHR
Sbjct:  254 PLLVKIAPDLTQQDKEDIAAVVTRKEGKVDGLIVTNTTITRPASLQSPHKAEGGGLSGPPLRHMATDTVRDMYRLTQGE-------------LPIIGVGGVSSGQDAYEKIKAGACLVQLYTALAYEGPPLVKRIKRELDELLRADGYNTVSEAIGSDHR 400
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig46530.11748.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LB11_ECTSI7.840e-6464.74Dihydroorotate dehydrogenase (quinone), mitochondr... [more]
A0A0S7KLQ1_9TELE1.350e-5762.66Dihydroorotate dehydrogenase (quinone), mitochondr... [more]
A0A1A8ADS0_NOTFU5.160e-5758.24Dihydroorotate dehydrogenase (quinone), mitochondr... [more]
UPI00145908451.760e-5659.41dihydroorotate dehydrogenase (quinone), mitochondr... [more]
A0A210PJJ5_MIZYE1.800e-5657.06Dihydroorotate dehydrogenase (quinone), mitochondr... [more]
H9GDG6_ANOCA3.510e-5660.98Dihydroorotate dehydrogenase (quinone), mitochondr... [more]
A0A1A8G5I3_9TELE6.960e-5658.24Dihydroorotate dehydrogenase (quinone), mitochondr... [more]
A0A151MVL3_ALLMI1.020e-5560.51Dihydroorotate dehydrogenase (quinone), mitochondr... [more]
A0A6P3VLW9_CLUHA1.100e-5561.49Dihydroorotate dehydrogenase (quinone), mitochondr... [more]
UPI0018D7F25E1.140e-5560.63dihydroorotate dehydrogenase (quinone), mitochondr... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig46530contigH-elongata_contig46530:2599..4224 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score213.0
Seed ortholog evalue1.1e-52
Seed eggNOG ortholog2880.D8LB11
Preferred nameDHODH
KEGG rclassRC00051
KEGG koko:K00254
KEGG ReactionR01868
KEGG Pathwayko00240,ko01100,map00240,map01100
KEGG ModuleM00051
GOsGO:0000003,GO:0000166,GO:0001101,GO:0003674,GO:0003824,GO:0004152,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005758,GO:0005829,GO:0006139,GO:0006206,GO:0006207,GO:0006213,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006950,GO:0007275,GO:0007565,GO:0007584,GO:0007589,GO:0007595,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009116,GO:0009117,GO:0009163,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009410,GO:0009605,GO:0009987,GO:0009991,GO:0010033,GO:0010181,GO:0010243,GO:0010821,GO:0010941,GO:0010942,GO:0014070,GO:0014074,GO:0016020,GO:0016491,GO:0016627,GO:0016635,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019856,GO:0019866,GO:0022414,GO:0022603,GO:0030879,GO:0031000,GO:0031090,GO:0031667,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0031981,GO:0032501,GO:0032502,GO:0032553,GO:0033043,GO:0034404,GO:0034641,GO:0034654,GO:0036094,GO:0036270,GO:0036477,GO:0042221,GO:0042493,GO:0042594,GO:0042981,GO:0043025,GO:0043065,GO:0043067,GO:0043068,GO:0043167,GO:0043168,GO:0043200,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043279,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044297,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044706,GO:0046112,GO:0046134,GO:0046390,GO:0046483,GO:0046903,GO:0048037,GO:0048038,GO:0048039,GO:0048513,GO:0048518,GO:0048522,GO:0048731,GO:0048732,GO:0048856,GO:0050662,GO:0050789,GO:0050793,GO:0050794,GO:0050878,GO:0050896,GO:0051128,GO:0051179,GO:0051234,GO:0051704,GO:0055086,GO:0055114,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0072527,GO:0072528,GO:0090140,GO:0090407,GO:0097159,GO:0097367,GO:0097458,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659,GO:1901698,GO:1901700,GO:1903576
EggNOG free text desc.dihydroorotate dehydrogenase activity
EggNOG OGsCOG0167@1,KOG1436@2759
Ec32 ortholog descriptionDihydroorotate dehydrogenase, class 2
Ec32 orthologEc-27_005670.1
EC1.3.5.2
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons4
Model size519
Cds size519
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig46530.11748.1prot_H-elongata_contig46530.11748.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig46530 2599..4224 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930770.3480642-CDS-H-elongata_contig46530:2598..27301622930770.3480642-CDS-H-elongata_contig46530:2598..2730Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46530 2599..2730 -
1691679562.3586898-CDS-H-elongata_contig46530:2598..27301691679562.3586898-CDS-H-elongata_contig46530:2598..2730Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46530 2599..2730 -
1622930770.359579-CDS-H-elongata_contig46530:3200..32811622930770.359579-CDS-H-elongata_contig46530:3200..3281Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46530 3201..3281 -
1691679562.3728142-CDS-H-elongata_contig46530:3200..32811691679562.3728142-CDS-H-elongata_contig46530:3200..3281Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46530 3201..3281 -
1622930770.3725398-CDS-H-elongata_contig46530:3597..37891622930770.3725398-CDS-H-elongata_contig46530:3597..3789Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46530 3598..3789 -
1691679562.3821604-CDS-H-elongata_contig46530:3597..37891691679562.3821604-CDS-H-elongata_contig46530:3597..3789Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46530 3598..3789 -
1622930770.3925366-CDS-H-elongata_contig46530:4110..42241622930770.3925366-CDS-H-elongata_contig46530:4110..4224Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46530 4111..4224 -
1691679562.3907816-CDS-H-elongata_contig46530:4110..42241691679562.3907816-CDS-H-elongata_contig46530:4110..4224Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46530 4111..4224 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig46530.11748.1

>prot_H-elongata_contig46530.11748.1 ID=prot_H-elongata_contig46530.11748.1|Name=mRNA_H-elongata_contig46530.11748.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=173bp
KVRESTGSASPLPLLVKIAPDLSEQEKEDIAAVVLEMKVDGLVVSNTTVS
RPRGLKSAHKKEGGGLSGSPLKSLATDTVRDMYRLTHGKARGRGNQWAAA
LLVPLLGVGGVATGRDAYEKIRAGASLVQLYSLLVFRGPAVIPDIKSELA
ALLNADGFSSVEEAVGADHRLAR
back to top

mRNA from alignment at H-elongata_contig46530:2599..4224-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig46530.11748.1 ID=mRNA_H-elongata_contig46530.11748.1|Name=mRNA_H-elongata_contig46530.11748.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1626bp|location=Sequence derived from alignment at H-elongata_contig46530:2599..4224- (Himanthalia elongata Himel1 dioecious)
AAGGTTCGGGAGTCTACGGGCAGCGCCTCGCCTTTGCCGCTATTGGTGAA
GATTGCGCCGGACTTGAGCGAACAGGAGAAGGAAGATATCGCCGCCGTTG
TCCTCGAGATGAAGGTGAGAGGGAATGGCGCGTGTGACTTGACGCCCGAA
AGAAAACACGTACTGCGCGGGGAATTGTGAGACTATCCTCTTTGCAAGGT
TTTATAGAGAAAGCGAGATGGATGTAACTGCCATTGTGACTTTGACGTGG
CGATTCTCGTGATTTTTCTACTCCGCAAGCTTGAACAAAAAAAATCATAA
AATAAGGGAGTGCCCAACCCAAGCAGCCAAACGCCGCTCTCTTTTTAATA
TATATCCCATGTTTTCCCACGCGCCCGTTTTCTGGAATTAATTACGTACG
TTATTCGTGCGTTTGCCCCGACGCTCTTCTGATAGGTAGACGGTCTTGTG
GTGTCCAACACCACGGTGTCGCGGCCTCGTGGCCTGAAGAGTGCTCACAA
GAAGGAGGGCGGTGGTCTTAGCGGGAGCCCGCTGAAGTCACTGGCGACGG
ACACGGTCCGAGATATGTATCGCCTCACCCACGGAAAGGCAAGAGGGCGA
GGGAATCAATGGGCCGCCGCACTCCTTGTCATGTAGCCACACAGTTCATC
CGCACGTCTCTAGGGAAAGCAAAGCAAATCACGCTGTCCTCATGCAAAAA
TCTACCATTTGGCGACAATGTCTCGCAGGAAACTTCCCCTGGTGCGCAAC
GTACGGCTCTGATACCTGAACGAAGCACAAGACTCGAAACCTTGAGACTT
GTAGTGCTAGTGGTGTGTGTGTGGGGTATGTTAACCTCGTCTTATATTGC
CTCTCCGCGAGCCCGCGTTGCACTGTGTAATATAAACTTAACGGTGAACC
TGTTGACGCTACCTTTGGTCCTCGCACGCTCTTTCTTTTGCAGGTTCCAT
TGCTCGGAGTCGGCGGAGTCGCGACCGGCAGAGACGCGTACGAGAAGATT
CGAGCGGGGGCATCACTTGTCCAGGTTTTCGGAAAAAATTGTGTGCGCGC
GCGTCCACGCTCGGGAGACTTTTGATTTTCGCCATCTCTTCAGCTTCTTC
CACCCGGTCTATTTTCTAGCCCGCACAGGAGTATTCGTCGTGTTGTTTGT
ATAATGATTCGAGACCGTCGTCTTTGCCTCATGCGGCCTAAACGATTTTG
CGCAAAGCCATCCGTCGCCACGGATGCTTTTGATTGTCCCGTACCTTGAC
ATATAATCTGTTTGCGAGCGTGCTCCCAGCCATAAACGAGAGTGCTGTTG
TTATTTTTATACCCCAAAACGCTTCGCACTGGTATCTCCGTGGGGAAATT
GAAGCCCAGCCAGAAGTACCTGGGCCGATCTTGTGAAACCCTCTGCAGAT
ACTCGCGCCCCATCAAATAGCACATCCGGCCCTTTCTCTGCTTTCCCTTC
GCGCCGTCATTTTTTATCGTTTTTGTTCGTCGGAGGGGTTTTAGCTGTAC
TCTCTCCTCGTGTTCAGGGGACCTGCCGTCATACCGGACATCAAGTCTGA
GCTTGCGGCCCTCCTTAACGCAGACGGATTCTCTTCGGTTGAGGAGGCAG
TCGGTGCCGATCATCGGTTGGCCAGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig46530:2599..4224-

>mRNA_H-elongata_contig46530.11748.1 ID=mRNA_H-elongata_contig46530.11748.1|Name=mRNA_H-elongata_contig46530.11748.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1038bp|location=Sequence derived from alignment at H-elongata_contig46530:2599..4224- (Himanthalia elongata Himel1 dioecious)
AAGGTTCGGGAGTCTACGGGCAGCGCCTCGCCTTTGCCGCTATTGGTGAA
GATTGCGCCGGACTTGAGCGAACAGGAGAAGGAAGATATCGCCGCCGTTG
TCCTCGAGATGAAGAAGGTTCGGGAGTCTACGGGCAGCGCCTCGCCTTTG
CCGCTATTGGTGAAGATTGCGCCGGACTTGAGCGAACAGGAGAAGGAAGA
TATCGCCGCCGTTGTCCTCGAGATGAAGGTAGACGGTCTTGTGGTGTCCA
ACACCACGGTGTCGCGGCCTCGTGGCCTGAAGAGTGCTCACAAGAAGGAG
GGCGGTGGTCTTAGCGGGAGCCCGCTGAAGTCACTGGCGACGGACACGGT
CCGAGATATGTATCGCCTCACCCACGGAAAGGCAAGAGGGCGAGGGAATC
AATGGGCCGCCGCACTCCTTGTAGACGGTCTTGTGGTGTCCAACACCACG
GTGTCGCGGCCTCGTGGCCTGAAGAGTGCTCACAAGAAGGAGGGCGGTGG
TCTTAGCGGGAGCCCGCTGAAGTCACTGGCGACGGACACGGTCCGAGATA
TGTATCGCCTCACCCACGGAAAGGCAAGAGGGCGAGGGAATCAATGGGCC
GCCGCACTCCTTGTTCCATTGCTCGGAGTCGGCGGAGTCGCGACCGGCAG
AGACGCGTACGAGAAGATTCGAGCGGGGGCATCACTTGTCCAGGTTCCAT
TGCTCGGAGTCGGCGGAGTCGCGACCGGCAGAGACGCGTACGAGAAGATT
CGAGCGGGGGCATCACTTGTCCAGCTGTACTCTCTCCTCGTGTTCAGGGG
ACCTGCCGTCATACCGGACATCAAGTCTGAGCTTGCGGCCCTCCTTAACG
CAGACGGATTCTCTTCGGTTGAGGAGGCAGTCGGTGCCGATCATCGGTTG
GCCAGACTGTACTCTCTCCTCGTGTTCAGGGGACCTGCCGTCATACCGGA
CATCAAGTCTGAGCTTGCGGCCCTCCTTAACGCAGACGGATTCTCTTCGG
TTGAGGAGGCAGTCGGTGCCGATCATCGGTTGGCCAGA
back to top